jgi.p|Nanoce1779_2|19309, mRNA_4275 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|19309
Unique Name	mRNA_4275
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1732
Alignment location	scaffold_10:172654..174950 -

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Properties


Property Name	Value
TranscriptId	19395
Track	FilteredModels2
ProteinId	19309

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:172654..174950 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|19309	gene_4275	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|19309	mRNA_4275-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4275	CDS_4275	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:172654..174950-
coding sequence from alignment at scaffold_10:172654..174950-

mRNA sequence

>mRNA_4275 ID=mRNA_4275|Name=jgi.p|Nanoce1779_2|19309|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp
AAGCAACACCACCAGAATGGTCGCCCCACAAATAACCCCAACTATGGTCA
AAGCATTGATGAGTGACTTGCCGAGCTTGACGGAATTGCTGTCCCCCCCA
TTCCCGTCTGCGTCCCCGTCGTTTATCGCATATACACTCACTCCTTGGTC
TTCCGTCGCAAATTCCACATTCACCACCACCAGGCTCGCTAGAAACATGG
TCAAGGCCACGGGCTTCAGGACTGCCCAGAAGGAGTTGGCAGAGTACAGG
ACGTCCTCAATGTCGAGGCCGTCGGGTTGTGTGTGAGCCGGGTCACGGGA
AGGAGTTGAGGTGCACAATGGCAGCTTTTTTTACGCGTGCACGACGACGA
TCCTCGACAATAGCGGCTTCCATCGTGGCCGGTAGTTCGTCGATTCTTCT
GACTTCGATGCTCACCCACGACGACCAGGATGCTGCAGGATTTGTAGCCC
ACGCCCAAGCCCACCAAGCAAACGATCTCCACAAATGGTCCCACGTCGGG
CTGCCTGCCTTCGACACAACTTACATTTTTCGAGAAAACTTTGTCATCTG
TTACGACTCCCGCACGCGGAATCCGAAATGGGTAATGGAACGCCTGACCA
AACAAACATGCACGGGGGAGGCGGACCGTCGCGTGGTGGGGTTCTACGAG
GAGGACAGCATCGATCCTCGCTTTCGCAGCAAAAATAGCGACTACCTGAA
TTCAGGGTATGATCGTGGACATATGGCATCAGCAGCCAACAACAGAAGCT
CGACACAGACCATGCAAGAAACGTTTTCCCTCGCGAATGTGTCGCCGCAG
GTCGGCGGGGGATTCAATCGAGATTATTGGGCTAGAGTCGAGAAATTTAC
GAGGGATCTGACCAAGCATTGCGACGCTGTCTACCTCGTCTCTGGTCCTC
TATTTCTCCCCCAGCGACGCGATACCATCATCACCAGCACCTCCAATACA
GCTTCCAAAGCCAAATTCATCATGACCTATGAATTGCTGGGAGAGGCCCC
CAGCCTCGTGGCGGTCCCCACGCACTTCTTCAAATGTGTGTTTGCCGAGA
TGCGGAATGGCCGAAAAGTCGTCGCTGCTTTTGTCTTGCCCAATGCACCC
ATACACGCTGACGTGCCTTTGACAAGGTTTTTGGTTCCGCTGGCAAATCT
GGAGCAGGCGGCAGGCTTCCGAATGTTTGCCCAGGCTCTGACAGAGGAGG
AGCGGGAGGAGGTGGATGCACGAGTCCTCGGTCTGAGAGGAGTTGGTGCA
GGAAATGGAGGCGAGGAGGTAAGGATTGAGGGCATGTTGACGAATGGCAT
ATCGGACGATGCGTTGGTAGTACGTCGTGGTGGCCGTGAAGGAGGAGGAG
GAAGAGGAGGAGGAGGAGGAGGAGGAGGGATAAAGCTGAATCTCGATGCG
CCTGAGCATCTGTGTGATGTTGTGTTATGCCAATTACCTCCGGAAAAATT
TTGGCAGGTGAATGGAAATAAAAAAAACAGGGAAAAGAGGAAGAATAGAG
ATGATTCTGGTGGTGTTAATGCTGAAAAGGGTGAAGAGTGGGCGTCGCCG
GGTTTCCCCTCCATGGTCCCCTCATCGTGGTGGTCGGGAGGAAGGACAGC
GTAAAAAATGGACACTTAAGCTCACGGCCTGAATGAAAAGCTTTGAAAAA
GATCTCTCATTAATGATCAATGCGAGACTCTAAGATGAAGAATTGTATGA
TCAAAAATTATCCAAAATTATTACATCACCTA

protein sequence of jgi.p|Nanoce1779_2|19309

>mRNA_4275-protein ID=mRNA_4275-protein|Name=jgi.p|Nanoce1779_2|19309|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MAAFFTRARRRSSTIAASIVAGSSSILLTSMLTHDDQDAAGFVAHAQAHQ
ANDLHKWSHVGLPAFDTTYIFRENFVICYDSRTRNPKWVMERLTKQTCTG
EADRRVVGFYEEDSIDPRFRSKNSDYLNSGYDRGHMASAANNRSSTQTMQ
ETFSLANVSPQVGGGFNRDYWARVEKFTRDLTKHCDAVYLVSGPLFLPQR
RDTIITSTSNTASKAKFIMTYELLGEAPSLVAVPTHFFKCVFAEMRNGRK
VVAAFVLPNAPIHADVPLTRFLVPLANLEQAAGFRMFAQALTEEEREEVD
ARVLGLRGVGAGNGGEEVRIEGMLTNGISDDALVVRRGGREGGGGRGGGG
GGGGIKLNLDAPEHLCDVVLCQLPPEKFWQVNGNKKNREKRKNRDDSGGV
NAEKGEEWASPGFPSMVPSSWWSGGRTA*

mRNA from alignment at scaffold_10:172654..174950-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4275 ID=mRNA_4275|Name=jgi.p|Nanoce1779_2|19309|organism=Nannochloropsis oceanica|type=mRNA|length=2297bp|location=Sequence derived from alignment at scaffold_10:172654..174950- (Nannochloropsis oceanica)
AAGCAACACCACCAGAATGGTCGCCCCACAAATAACCCCAACTATGGTCA
AAGCATTGATGAGTGACTTGCCGAGCTTGACGGAATTGCTGTCCCCCCCA
TTCCCGTCTGCGTCCCCGTCGTTTATCGCATATACACTCACTCCTTGGTC
TTCCGTCGCAAATTCCACATTCACCACCACCAGGCTCGCTAGAAACATGG
TCAAGGCCACGGGCTTCAGGACTGCCCAGAAGGAGTTGGCAGAGTACAGG
ACGTCCTCAATGTCGAGGCCGTCGGGTTGTGTGTGAGCCGGGTCACGGGA
AGGAGTTGAGGTACGCTCGTCGCTGCTGCTACTGTCGAAGGAAGTCGGTG
GTGGCGGGAAAGGGGCAGGCAGCGGGGGAGGTGCTGGTCGTGCCATGGCT
ATCGCTGTGTTTTAGTTTGGGCAGGTTGAAGCTTATGTGGGGTGGCAGGG
GTGAAAGTGTAAAAACATGGGCACGATGCAAGCATCGCTGAACAGGGTAT
ACAGCTTCCGAGATTGCGTCAACGCCAACAACGCCAACAATAGGGCGTTA
CATAGACACTCAACTGGCACAGAAACACAAACAGACAGGTTGTTGTTGGC
CTGTGTAGTTTGCGTACAGAGGGCAGGCACATTTGGGTTCAAAAGCAGGA
GAGAGACTTTGGCATCATCCACGCGTACGTGTCGACATCCCCTCCCTCTC
CGCACAAAACAACTAATACATGCAAAATCACAGGTGCACAATGGCAGCTT
TTTTTACGCGTGCACGACGACGATCCTCGACAATAGCGGCTTCCATCGTG
GCCGGTAGTTCGTCGATTCTTCTGACTTCGATGCTCACCCACGACGACCA
GGATGCTGCAGGATTTGTAGCCCACGCCCAAGCCCACCAAGCAAACGATC
TCCACAAATGGTCCCACGTCGGGCTGCCTGCCTTCGACACAACTTACATT
TTTCGAGAAAACTTTGTCATCTGTTACGACTCCCGCACGCGGAATCCGAA
ATGGGTAATGGAACGCCTGACCAAACAAACATGCACGGGGGAGGCGGACC
GTCGCGTGGTGGGGTTCTACGAGGAGGACAGCATCGATCCTCGCTTTCGC
AGCAAAAATAGCGACTACCTGAATTCAGGGTATGATCGTGGACATATGGC
ATCAGCAGCCAACAACAGAAGCTCGACACAGACCATGCAAGAAACGTTTT
CCCTCGCGAATGTGTCGCCGCAGGTCGGCGGGGGATTCAATCGAGATTAT
TGGGCTAGGTTTGTGCGGGTTGAGAAGAAAATGAGAAGAATAGAAATAGG
GAACAGTGGATAGCTATATTTTTCCCCCATTTTGAATAGTGACATTCAGC
AAAGCAAATCATTCACTCCCCCTCGTTGCGTCCTTCCTCCCACCCCCCAG
AGTCGAGAAATTTACGAGGGATCTGACCAAGCATTGCGACGCTGTCTACC
TCGTCTCTGGTCCTCTATTTCTCCCCCAGCGACGCGATACCATCATCACC
AGCACCTCCAATACAGCTTCCAAAGCCAAATTCATCATGACCTATGAATT
GCTGGGAGAGGCCCCCAGCCTCGTGGCGGTCCCCACGCACTTCTTCAAAT
GTGTGTTTGCCGAGATGCGGAATGGCCGAAAAGTCGTCGCTGCTTTTGTC
TTGCCCAATGCACCCATACACGCTGACGTGCCTTTGACAAGGTTTTTGGT
TCCGCTGGCAAATCTGGAGCAGGCGGCAGGCTTCCGAATGTTTGCCCAGG
CTCTGACAGAGGAGGAGCGGGAGGAGGTGGATGCACGAGTCCTCGGTCTG
AGAGGAGTTGGTGCAGGAAATGGAGGCGAGGAGGTAAGGATTGAGGGCAT
GTTGACGAATGGCATATCGGACGATGCGTTGGTAGTACGTCGTGGTGGCC
GTGAAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGATAAAG
CTGAATCTCGATGCGCCTGAGCATCTGTGTGATGTTGTGTTATGCCAATT
ACCTCCGGAAAAATTTTGGCAGGTGAATGGAAATAAAAAAAACAGGGAAA
AGAGGAAGAATAGAGATGATTCTGGTGGTGTTAATGCTGAAAAGGGTGAA
GAGTGGGCGTCGCCGGGTTTCCCCTCCATGGTCCCCTCATCGTGGTGGTC
GGGAGGAAGGACAGCGTAAAAAATGGACACTTAAGCTCACGGCCTGAATG
AAAAGCTTTGAAAAAGATCTCTCATTAATGATCAATGCGAGACTCTAAGA
TGAAGAATTGTATGATCAAAAATTATCCAAAATTATTACATCACCTA

Coding sequence (CDS) from alignment at scaffold_10:172654..174950-

>mRNA_4275 ID=mRNA_4275|Name=jgi.p|Nanoce1779_2|19309|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_10:172654..174950- (Nannochloropsis oceanica)
AGTCGAGAAATTTACGAGGGATCTGACCAAGCATTGCGACGCTGTCTACC
TCGTCTCTGGTCCTCTATTTCTCCCCCAGCGACGCGATACCATCATCACC
AGCACCTCCAATACAGCTTCCAAAGCCAAATTCATCATGACCTATGAATT
GCTGGGAGAGGCCCCCAGCCTCGTGGCGGTCCCCACGCACTTCTTCAAAT
GTGTGTTTGCCGAGATGCGGAATGGCCGAAAAGTCGTCGCTGCTTTTGTC
TTGCCCAATGCACCCATACACGCTGACGTGCCTTTGACAAGGTTTTTGGT
TCCGCTGGCAAATCTGGAGCAGGCGGCAGGCTTCCGAATGTTTGCCCAGG
CTCTGACAGAGGAGGAGCGGGAGGAGGTGGATGCACGAGTCCTCGGTCTG
AGAGGAGTTGGTGCAGGAAATGGAGGCGAGGAGGTAAGGATTGAGGGCAT
GTTGACGAATGGCATATCGGACGATGCGTTGGTAGTACGTCGTGGTGGCC
GTGAAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGATAAAG
CTGAATCTCGATGCGCCTGAGCATCTGTGTGATGTTGTGTTATGCCAATT
ACCTCCGGAAAAATTTTGGCAGGTGAATGGAAATAAAAAAAACAGGGAAA
AGAGGAAGAATAGAGATGATTCTGGTGGTGTTAATGCTGAAAAGGGTGAA
GAGTGGGCGTCGCCGGGTTTCCCCTCCATGGTCCCCTCATCGTGGTGGTC
GGGAGGAAGGACAGCGTAAATGGCAGCTTTTTTTACGCGTGCACGACGAC
GATCCTCGACAATAGCGGCTTCCATCGTGGCCGGTAGTTCGTCGATTCTT
CTGACTTCGATGCTCACCCACGACGACCAGGATGCTGCAGGATTTGTAGC
CCACGCCCAAGCCCACCAAGCAAACGATCTCCACAAATGGTCCCACGTCG
GGCTGCCTGCCTTCGACACAACTTACATTTTTCGAGAAAACTTTGTCATC
TGTTACGACTCCCGCACGCGGAATCCGAAATGGGTAATGGAACGCCTGAC
CAAACAAACATGCACGGGGGAGGCGGACCGTCGCGTGGTGGGGTTCTACG
AGGAGGACAGCATCGATCCTCGCTTTCGCAGCAAAAATAGCGACTACCTG
AATTCAGGGTATGATCGTGGACATATGGCATCAGCAGCCAACAACAGAAG
CTCGACACAGACCATGCAAGAAACGTTTTCCCTCGCGAATGTGTCGCCGC
AGGTCGGCGGGGGATTCAATCGAGATTATTGGGCTAGAGTCGAGAAATTT
ACGAGGGATCTGACCAAGCATTGCGACGCTGTCTACCTCGTCTCTGGTCC
TCTATTTCTCCCCCAGCGACGCGATACCATCATCACCAGCACCTCCAATA
CAGCTTCCAAAGCCAAATTCATCATGACCTATGAATTGCTGGGAGAGGCC
CCCAGCCTCGTGGCGGTCCCCACGCACTTCTTCAAATGTGTGTTTGCCGA
GATGCGGAATGGCCGAAAAGTCGTCGCTGCTTTTGTCTTGCCCAATGCAC
CCATACACGCTGACGTGCCTTTGACAAGGTTTTTGGTTCCGCTGGCAAAT
CTGGAGCAGGCGGCAGGCTTCCGAATGTTTGCCCAGGCTCTGACAGAGGA
GGAGCGGGAGGAGGTGGATGCACGAGTCCTCGGTCTGAGAGGAGTTGGTG
CAGGAAATGGAGGCGAGGAGGTAAGGATTGAGGGCATGTTGACGAATGGC
ATATCGGACGATGCGTTGGTAGTACGTCGTGGTGGCCGTGAAGGAGGAGG
AGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGATAAAGCTGAATCTCGATG
CGCCTGAGCATCTGTGTGATGTTGTGTTATGCCAATTACCTCCGGAAAAA
TTTTGGCAGGTGAATGGAAATAAAAAAAACAGGGAAAAGAGGAAGAATAG
AGATGATTCTGGTGGTGTTAATGCTGAAAAGGGTGAAGAGTGGGCGTCGC
CGGGTTTCCCCTCCATGGTCCCCTCATCGTGGTGGTCGGGAGGAAGGACA
GCGTAAATGGCAGCTTTTTTTACGCGTGCACGACGACGATCCTCGACAAT
AGCGGCTTCCATCGTGGCCGGTAGTTCGTCGATTCTTCTGACTTCGATGC
TCACCCACGACGACCAGGATGCTGCAGGATTTGTAGCCCACGCCCAAGCC
CACCAAGCAAACGATCTCCACAAATGGTCCCACGTCGGGCTGCCTGCCTT
CGACACAACTTACATTTTTCGAGAAAACTTTGTCATCTGTTACGACTCCC
GCACGCGGAATCCGAAATGGGTAATGGAACGCCTGACCAAACAAACATGC
ACGGGGGAGGCGGACCGTCGCGTGGTGGGGTTCTACGAGGAGGACAGCAT
CGATCCTCGCTTTCGCAGCAAAAATAGCGACTACCTGAATTCAGGGTATG
ATCGTGGACATATGGCATCAGCAGCCAACAACAGAAGCTCGACACAGACC
ATGCAAGAAACGTTTTCCCTCGCGAATGTGTCGCCGCAGGTCGGCGGGGG
ATTCAATCGAGATTATTGGGCTAG

Synonyms

Publications