jgi.p|Nanoce1779_2|588582, mRNA_4274 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588582
Unique Name	mRNA_4274
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1792
Alignment location	scaffold_10:170737..172528 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588668
Track	FilteredModels2
ProteinId	588582

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:170737..172528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588582	gene_4274	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588582	mRNA_4274-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4274	CDS_4274	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:170737..172528+
coding sequence from alignment at scaffold_10:170737..172528+

mRNA sequence

>mRNA_4274 ID=mRNA_4274|Name=jgi.p|Nanoce1779_2|588582|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp
ACAGGCGAGGAGAAGACAATGGGGGCTTTCCCGCGCTGCCGGGATCACGC
AGAGATGGCGCCTTTTATTCTTTCCAGCTCCGATTTGCAGTCGACCTTCC
CATCCCCCCCATCCTCCTCCCCATCCTCCTTTTTCTCCTCTCCCTCCGCA
TCCTCCATCCCTTCGATACAAGTCAAGACGCTCTACACCGTCCGGGGCCG
GGTTTGCGCTCGGCGACCGTTTGCCAAGTGCATGCTGTTCTTTGACCTGG
TGGATGCCAAGACACGCAATCAAACCCGCGGTGACCTCGTCATTCGTCTT
GAATGCCTATTACATGCCAAGGGACTGGCAGGGCTGGAGAGAGCTCATGT
GAAAAAAATAATGCATGACGTGCATATGGGTGATGTGCTGGAGGTGGATG
GGTTTCTCGATACGCGACAGGAATTTCTAGTGTTAGAGGCAAAGGAATTC
CGGGTAGTTGAGGCGTGGAAGTCCTTGCAAGAAAACCCCAGGGTCGGCTT
TGTCTTGGAGTGGCCTTCTGCATCCCAAGAAGAGATGAAAATCGAAGCGG
AAGCATCAGCATCAGGAGCAGCGACAACGGAACGAGCTTCGGGAGCAGTA
GCAGCAGCAGCTTCAGTACTATTACTAGCTAAAGAGAGCAGCAGCAATGC
AAATCAAGAGGGCCATAGCAGTCACACCCTCGGCAACAATGCCAACAAAA
TGAGCGATAACAACAATAAAGATAAAAGCTCGCTTCCTCCCCTCCTGCTT
GAAAACATCTGTAAATACTGGGTCGCCAACCAGGGCCGCTGCTATCAATC
AAAAGGCGGCTGTCCCAAATTCCATCCCCCCCTTTCTCAGCTTCCTAATT
ACTACACCGCCTGGCTTGCCAAGCGTCAAAAAGAGCGAGCGCACGCCTCT
CAAATCGAAGGAGACACCCACCCTCCTGAAGATAAGACCAACAAAGCTCT
TCGTGCCGTGTTATTTGCAGATTGGCTGGTGCAGACCTACGGGGCGACGA
CGCTGGCGGAGGGGAGCGGGGTGGTTGATGTGGCGGGAGGGAAGGGAGAT
GTGTCTTGTCGGCTGTGGGGAGAGTATGGAATCAGGTGCACCATTGTCGA
TCCTCGTGCGACGAATTTTAGGAAGAAGGTGCAGCAGCAGGTGGTGAGAC
AGAGGGGTGGGATGGAAGGCATTGGGCGCTTGCCCTGCATCATGCCCGCG
GGGTGTTTGGAGAATGAGGAGGAGGAAGGGGGGGAGGACGGGGAGGATGG
GGCGCAAGACCAGAAAAGAAGGTTAAGGAGAGTCTTGAAAGAGTGTTCAC
TGGTCGTGGGCATGCACCCTGACCAAGCGACAGATGGCATATTTGAGGCG
GCGTTGACTTATGGCAAGCCCGTAGCATGTGTGCCGTGTTGTGTGTTTGC
ACGAGAGTTCCCGCATCGACGGCGACCGAATATGGCGAAGGAGAAAGTGG
AAGTGGAAGAAAAGGAAGAGAGGGAGAAGGAGAAAGGGAAGGAGACCAAC
GTTGTGCAGGAGGGGGCGGAGGAGGAAGGAGGGGAGGAAGGGCAGGAGGT
AGAGAGTTACGAGCACTTGATTGAGTATTTGATGGCGAAGCCAACGCCAT
GGCCAGGGGTGGCGTGTCAGAGGAAGTTTTTGCCGTTTTTGGGGCGGAAT
CAGGTCTTATTTACGTTGCCTCCTTCCCTGTCTTCTTGGACAGACGGGGA
GGAGGGAGGGAGGGAGGACGAGGGGGAGGAGGCGAAGGGGGAGGTGGCGG
GTGGATGTTAGTTGGAAAAATTGAGTTTTACAGGGATACTAA

protein sequence of jgi.p|Nanoce1779_2|588582

>mRNA_4274-protein ID=mRNA_4274-protein|Name=jgi.p|Nanoce1779_2|588582|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MGAFPRCRDHAEMAPFILSSSDLQSTFPSPPSSSPSSFFSSPSASSIPSI
QVKTLYTVRGRVCARRPFAKCMLFFDLVDAKTRNQTRGDLVIRLECLLHA
KGLAGLERAHVKKIMHDVHMGDVLEVDGFLDTRQEFLVLEAKEFRVVEAW
KSLQENPRVGFVLEWPSASQEEMKIEAEASASGAATTERASGAVAAAASV
LLLAKESSSNANQEGHSSHTLGNNANKMSDNNNKDKSSLPPLLLENICKY
WVANQGRCYQSKGGCPKFHPPLSQLPNYYTAWLAKRQKERAHASQIEGDT
HPPEDKTNKALRAVLFADWLVQTYGATTLAEGSGVVDVAGGKGDVSCRLW
GEYGIRCTIVDPRATNFRKKVQQQVVRQRGGMEGIGRLPCIMPAGCLENE
EEEGGEDGEDGAQDQKRRLRRVLKECSLVVGMHPDQATDGIFEAALTYGK
PVACVPCCVFAREFPHRRRPNMAKEKVEVEEKEEREKEKGKETNVVQEGA
EEEGGEEGQEVESYEHLIEYLMAKPTPWPGVACQRKFLPFLGRNQVLFTL
PPSLSSWTDGEEGGREDEGEEAKGEVAGGC*

mRNA from alignment at scaffold_10:170737..172528+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4274 ID=mRNA_4274|Name=jgi.p|Nanoce1779_2|588582|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at scaffold_10:170737..172528+ (Nannochloropsis oceanica)
ACAGGCGAGGAGAAGACAATGGGGGCTTTCCCGCGCTGCCGGGATCACGC
AGAGATGGCGCCTTTTATTCTTTCCAGCTCCGATTTGCAGTCGACCTTCC
CATCCCCCCCATCCTCCTCCCCATCCTCCTTTTTCTCCTCTCCCTCCGCA
TCCTCCATCCCTTCGATACAAGTCAAGACGCTCTACACCGTCCGGGGCCG
GGTTTGCGCTCGGCGACCGTTTGCCAAGTGCATGCTGTTCTTTGACCTGG
TGGATGCCAAGACACGCAATCAAACCCGCGGTGACCTCGTCATTCGTCTT
GAATGCCTATTACATGCCAAGGGACTGGCAGGGCTGGAGAGAGCTCATGT
GAAAAAAATAATGCATGACGTGCATATGGGTGATGTGCTGGAGGTGGATG
GGTTTCTCGATACGCGACAGGAATTTCTAGTGTTAGAGGCAAAGGAATTC
CGGGTAGTTGAGGCGTGGAAGTCCTTGCAAGAAAACCCCAGGGTCGGCTT
TGTCTTGGAGTGGCCTTCTGCATCCCAAGAAGAGATGAAAATCGAAGCGG
AAGCATCAGCATCAGGAGCAGCGACAACGGAACGAGCTTCGGGAGCAGTA
GCAGCAGCAGCTTCAGTACTATTACTAGCTAAAGAGAGCAGCAGCAATGC
AAATCAAGAGGGCCATAGCAGTCACACCCTCGGCAACAATGCCAACAAAA
TGAGCGATAACAACAATAAAGATAAAAGCTCGCTTCCTCCCCTCCTGCTT
GAAAACATCTGTAAATACTGGGTCGCCAACCAGGGCCGCTGCTATCAATC
AAAAGGCGGCTGTCCCAAATTCCATCCCCCCCTTTCTCAGCTTCCTAATT
ACTACACCGCCTGGCTTGCCAAGCGTCAAAAAGAGCGAGCGCACGCCTCT
CAAATCGAAGGAGACACCCACCCTCCTGAAGATAAGACCAACAAAGCTCT
TCGTGCCGTGTTATTTGCAGATTGGCTGGTGCAGACCTACGGGGCGACGA
CGCTGGCGGAGGGGAGCGGGGTGGTTGATGTGGCGGGAGGGAAGGGAGAT
GTGTCTTGTCGGCTGTGGGGAGAGTATGGAATCAGGTGCACCATTGTCGA
TCCTCGTGCGACGAATTTTAGGAAGAAGGTGCAGCAGCAGGTGGTGAGAC
AGAGGGGTGGGATGGAAGGCATTGGGCGCTTGCCCTGCATCATGCCCGCG
GGGTGTTTGGAGAATGAGGAGGAGGAAGGGGGGGAGGACGGGGAGGATGG
GGCGCAAGACCAGAAAAGAAGGTTAAGGAGAGTCTTGAAAGAGTGTTCAC
TGGTCGTGGGCATGCACCCTGACCAAGCGACAGATGGCATATTTGAGGCG
GCGTTGACTTATGGCAAGCCCGTAGCATGTGTGCCGTGTTGTGTGTTTGC
ACGAGAGTTCCCGCATCGACGGCGACCGAATATGGCGAAGGAGAAAGTGG
AAGTGGAAGAAAAGGAAGAGAGGGAGAAGGAGAAAGGGAAGGAGACCAAC
GTTGTGCAGGAGGGGGCGGAGGAGGAAGGAGGGGAGGAAGGGCAGGAGGT
AGAGAGTTACGAGCACTTGATTGAGTATTTGATGGCGAAGCCAACGCCAT
GGCCAGGGGTGGCGTGTCAGAGGAAGTTTTTGCCGTTTTTGGGGCGGAAT
CAGGTCTTATTTACGTTGCCTCCTTCCCTGTCTTCTTGGACAGACGGGGA
GGAGGGAGGGAGGGAGGACGAGGGGGAGGAGGCGAAGGGGGAGGTGGCGG
GTGGATGTTAGTTGGAAAAATTGAGTTTTACAGGGATACTAA

Coding sequence (CDS) from alignment at scaffold_10:170737..172528+

>mRNA_4274 ID=mRNA_4274|Name=jgi.p|Nanoce1779_2|588582|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at scaffold_10:170737..172528+ (Nannochloropsis oceanica)
ATGGGGGCTTTCCCGCGCTGCCGGGATCACGCAGAGATGGCGCCTTTTAT
TCTTTCCAGCTCCGATTTGCAGTCGACCTTCCCATCCCCCCCATCCTCCT
CCCCATCCTCCTTTTTCTCCTCTCCCTCCGCATCCTCCATCCCTTCGATA
CAAGTCAAGACGCTCTACACCGTCCGGGGCCGGGTTTGCGCTCGGCGACC
GTTTGCCAAGTGCATGCTGTTCTTTGACCTGGTGGATGCCAAGACACGCA
ATCAAACCCGCGGTGACCTCGTCATTCGTCTTGAATGCCTATTACATGCC
AAGGGACTGGCAGGGCTGGAGAGAGCTCATGTGAAAAAAATAATGCATGA
CGTGCATATGGGTGATGTGCTGGAGGTGGATGGGTTTCTCGATACGCGAC
AGGAATTTCTAGTGTTAGAGGCAAAGGAATTCCGGGTAGTTGAGGCGTGG
AAGTCCTTGCAAGAAAACCCCAGGGTCGGCTTTGTCTTGGAGTGGCCTTC
TGCATCCCAAGAAGAGATGAAAATCGAAGCGGAAGCATCAGCATCAGGAG
CAGCGACAACGGAACGAGCTTCGGGAGCAGTAGCAGCAGCAGCTTCAGTA
CTATTACTAGCTAAAGAGAGCAGCAGCAATGCAAATCAAGAGGGCCATAG
CAGTCACACCCTCGGCAACAATGCCAACAAAATGAGCGATAACAACAATA
AAGATAAAAGCTCGCTTCCTCCCCTCCTGCTTGAAAACATCTGTAAATAC
TGGGTCGCCAACCAGGGCCGCTGCTATCAATCAAAAGGCGGCTGTCCCAA
ATTCCATCCCCCCCTTTCTCAGCTTCCTAATTACTACACCGCCTGGCTTG
CCAAGCGTCAAAAAGAGCGAGCGCACGCCTCTCAAATCGAAGGAGACACC
CACCCTCCTGAAGATAAGACCAACAAAGCTCTTCGTGCCGTGTTATTTGC
AGATTGGCTGGTGCAGACCTACGGGGCGACGACGCTGGCGGAGGGGAGCG
GGGTGGTTGATGTGGCGGGAGGGAAGGGAGATGTGTCTTGTCGGCTGTGG
GGAGAGTATGGAATCAGGTGCACCATTGTCGATCCTCGTGCGACGAATTT
TAGGAAGAAGGTGCAGCAGCAGGTGGTGAGACAGAGGGGTGGGATGGAAG
GCATTGGGCGCTTGCCCTGCATCATGCCCGCGGGGTGTTTGGAGAATGAG
GAGGAGGAAGGGGGGGAGGACGGGGAGGATGGGGCGCAAGACCAGAAAAG
AAGGTTAAGGAGAGTCTTGAAAGAGTGTTCACTGGTCGTGGGCATGCACC
CTGACCAAGCGACAGATGGCATATTTGAGGCGGCGTTGACTTATGGCAAG
CCCGTAGCATGTGTGCCGTGTTGTGTGTTTGCACGAGAGTTCCCGCATCG
ACGGCGACCGAATATGGCGAAGGAGAAAGTGGAAGTGGAAGAAAAGGAAG
AGAGGGAGAAGGAGAAAGGGAAGGAGACCAACGTTGTGCAGGAGGGGGCG
GAGGAGGAAGGAGGGGAGGAAGGGCAGGAGGTAGAGAGTTACGAGCACTT
GATTGAGTATTTGATGGCGAAGCCAACGCCATGGCCAGGGGTGGCGTGTC
AGAGGAAGTTTTTGCCGTTTTTGGGGCGGAATCAGGTCTTATTTACGTTG
CCTCCTTCCCTGTCTTCTTGGACAGACGGGGAGGAGGGAGGGAGGGAGGA
CGAGGGGGAGGAGGCGAAGGGGGAGGTGGCGGGTGGATGTTAG

Synonyms

Publications