jgi.p|Nanoce1779_2|588568, mRNA_4270 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588568
Unique Name	mRNA_4270
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2314
Alignment location	scaffold_10:155373..157686 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588654
Track	FilteredModels2
ProteinId	588568

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:155373..157686 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588568	gene_4270	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588568	mRNA_4270-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4270	CDS_4270	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:155373..157686+
coding sequence from alignment at scaffold_10:155373..157686+

mRNA sequence

>mRNA_4270 ID=mRNA_4270|Name=jgi.p|Nanoce1779_2|588568|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp
ACAGGCACCGTCATAGTAATGGGGGCTTCTGTCTTACGCAGACTGGTGCT
GCTTTTACTGCCGCTGCATGGAGCAACTTTCTTCCTTTCCAGCAGCAGCC
AGTATCATCGTCGCTCACCACCAAGCCCGCAGCACCATCGACACTCTTAT
CCACTGCACGCCACTACCGACGAAATACTCACCGCCACCGCCCCTAAGCC
CACGCCTGACCTCTGCATCTTTGATGCTCCCAAGGCCGTTCGCCTGGCCG
CCTTTTCCTTTGCTACTTACGGAGATCCCACTGGCTCCCGATGGCTGCGT
CTGCCCGACGGCACTGACCTTGGCTTCCAATCTGATGACTTGGTGCGCAA
CAACTTTAAAAGTTTGCTGTTGGTTCACATCCTGCAAGCCCGCAACCTGC
CAGAAGAACGGGGCGGGCTTATTGAGAGGGCTCTCTCAGGCTTTAGCTGC
GACCCCTACGTCATCACGGCCGTCAACAATTCGTGGGGTGCAGATATCGC
CATCACTAAGGCCAAGAGTGCTAATTCCAATCCCGATTTTTTCCAGCGCT
TTTTCTTGTACGTGGAAGATCCCAACACAACGGATCTAGAGCTAACTGTC
AAGGATAAGAACCTGCTGAAAGGCGATGATGTTATTGGGCACTGTCTGGT
GCCCTTGACGCAGCTGCTCGACGGGTCAAAAGGAGAGGGCGCACCTGGTC
AAGAAGGCGTGATGGAGTGGGCGGGGACCTTGCAAATCGAAAGCGTGCAC
AAGGATTTTAAGGATGCTGGCACCATTGACGTAGAGCTGCAGCTGGTGCC
CTTGAATGGAGAGGCCGTGAACAAGGTCGAATACGACTCCAATGACCAGG
ACGTCGCCGAGAGCGACGCCGATGGCAGTGGCAGCAAGCATGGTAAATTC
AGTGCACGGGGTCCGAAAAGTGTGCTTGAAGGCATTGATTGGAATGAGCT
GGGCGCCCGTGTCGGTGGAGTGGCCAGGGGGCTGGGCCGCTACCAGTTTG
CCTGCTTTCTGACCAACGAGGAGACCGATACGCAGGGGGGAATCTGGTTT
GATGCCAAAGCCAAGGAGATCATTGTCTCCTTCCGAGGCACGCAGATGGA
ATGGAAGGATTTGCTGACTGACATGGCGATCTATCAAGAAGGGTTGGATG
GGCCTGAGGACCCGCGGTTGGTGCACGCGGGCTTTCGACGTGCTTTTCGT
TCTATTCAAGGCGGGGTCCTACAGGCCTTGAATTTTATAGCTTCCAATTT
GGTGGAGGATGGATGGTCTATAGACGTGTGTGGGCACTCCTTAGGGGGGG
CACTGGCGTGCTTGATGGCCCACGAGATCGATCGGCGCATGCCTGCCTTG
GTAGAGGAAGGGAGGCTGAATGTTTTTTCCTTTGGGGCGCCAAGGGTGGG
TAACACGGCGTTTTGTGAGGACTATGACAAGCGGCTTAAAAACCAGAGCT
TTCGAATAGTGAATGGGTTGGACGTTGTTGCGCGAATGCCACGAGGGTCG
GGTGAATCTTCCCTATTGATGGAATACAGTCATTGCGGGCGCACGGTACT
ACTGACCGAGACAGAAGACGGTCGATTTAGTGTATGGGTGGAGGGCGAAA
GTGAAGGCACTTGCCCACTCAAAGAAGGAGAGGCATTTACGAGCACGACG
CCTACGAGTCAATCCATGGCGGAGATTATCAAGAAGGCCGCAATAGAAGC
GATGGAGAGAGGGAAGGGAGGTCTTGAGTTTGAAACTCCATTTAGCAAGG
CAACCTTTGCGAACGGTACAGCTGCCTCAGTGCAAGAAATGCTGCGGGCC
GCCGGAAACTTTACAAACCTTCAAGCTATGCTCTCCTCTACGTCCTCCAT
CGACTACTTCTCCTCTTTCACCTCCATTCCTTCCTCGCCTTCTCTGGGGC
CATTTGGACAGCTGAGCTTGCAAACGGATTTGCAGCAAATCGCCAATGCA
GTGTTTGGAAGCGCGATGAACTCGACAGCTACGATTGGCAAGAGCTTGGG
GTTGAATGAGACGTTTGTAGATAGTGAGTTGAGTTTAATTCGAGGGTTGG
TGTACGGAGATGCATTAGCCCACCATATGGAGCCGCTTTATTATGTTGCG
CTTGAGAAAGCGTTTGGGATTGCGATGGAGGAAGGGGTGGATGACAAGAA
AGGGGAAGAGAAGGGGGATGGTGCAACGAAGAAGTACGGATAATGAGTCA
CACGAAAAGGCAAGGAAACGGTCAGTACACTAGCTTACTTGGCAAGTAAA
ATGTATGAAATTATGTGAGCATGCATTGAAGTTTAAAAACTGGTTTGCAT
AGAAATACATATTT

protein sequence of jgi.p|Nanoce1779_2|588568

>mRNA_4270-protein ID=mRNA_4270-protein|Name=jgi.p|Nanoce1779_2|588568|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MGASVLRRLVLLLLPLHGATFFLSSSSQYHRRSPPSPQHHRHSYPLHATT
DEILTATAPKPTPDLCIFDAPKAVRLAAFSFATYGDPTGSRWLRLPDGTD
LGFQSDDLVRNNFKSLLLVHILQARNLPEERGGLIERALSGFSCDPYVIT
AVNNSWGADIAITKAKSANSNPDFFQRFFLYVEDPNTTDLELTVKDKNLL
KGDDVIGHCLVPLTQLLDGSKGEGAPGQEGVMEWAGTLQIESVHKDFKDA
GTIDVELQLVPLNGEAVNKVEYDSNDQDVAESDADGSGSKHGKFSARGPK
SVLEGIDWNELGARVGGVARGLGRYQFACFLTNEETDTQGGIWFDAKAKE
IIVSFRGTQMEWKDLLTDMAIYQEGLDGPEDPRLVHAGFRRAFRSIQGGV
LQALNFIASNLVEDGWSIDVCGHSLGGALACLMAHEIDRRMPALVEEGRL
NVFSFGAPRVGNTAFCEDYDKRLKNQSFRIVNGLDVVARMPRGSGESSLL
MEYSHCGRTVLLTETEDGRFSVWVEGESEGTCPLKEGEAFTSTTPTSQSM
AEIIKKAAIEAMERGKGGLEFETPFSKATFANGTAASVQEMLRAAGNFTN
LQAMLSSTSSIDYFSSFTSIPSSPSLGPFGQLSLQTDLQQIANAVFGSAM
NSTATIGKSLGLNETFVDSELSLIRGLVYGDALAHHMEPLYYVALEKAFG
IAMEEGVDDKKGEEKGDGATKKYG*

mRNA from alignment at scaffold_10:155373..157686+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4270 ID=mRNA_4270|Name=jgi.p|Nanoce1779_2|588568|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at scaffold_10:155373..157686+ (Nannochloropsis oceanica)
ACAGGCACCGTCATAGTAATGGGGGCTTCTGTCTTACGCAGACTGGTGCT
GCTTTTACTGCCGCTGCATGGAGCAACTTTCTTCCTTTCCAGCAGCAGCC
AGTATCATCGTCGCTCACCACCAAGCCCGCAGCACCATCGACACTCTTAT
CCACTGCACGCCACTACCGACGAAATACTCACCGCCACCGCCCCTAAGCC
CACGCCTGACCTCTGCATCTTTGATGCTCCCAAGGCCGTTCGCCTGGCCG
CCTTTTCCTTTGCTACTTACGGAGATCCCACTGGCTCCCGATGGCTGCGT
CTGCCCGACGGCACTGACCTTGGCTTCCAATCTGATGACTTGGTGCGCAA
CAACTTTAAAAGTTTGCTGTTGGTTCACATCCTGCAAGCCCGCAACCTGC
CAGAAGAACGGGGCGGGCTTATTGAGAGGGCTCTCTCAGGCTTTAGCTGC
GACCCCTACGTCATCACGGCCGTCAACAATTCGTGGGGTGCAGATATCGC
CATCACTAAGGCCAAGAGTGCTAATTCCAATCCCGATTTTTTCCAGCGCT
TTTTCTTGTACGTGGAAGATCCCAACACAACGGATCTAGAGCTAACTGTC
AAGGATAAGAACCTGCTGAAAGGCGATGATGTTATTGGGCACTGTCTGGT
GCCCTTGACGCAGCTGCTCGACGGGTCAAAAGGAGAGGGCGCACCTGGTC
AAGAAGGCGTGATGGAGTGGGCGGGGACCTTGCAAATCGAAAGCGTGCAC
AAGGATTTTAAGGATGCTGGCACCATTGACGTAGAGCTGCAGCTGGTGCC
CTTGAATGGAGAGGCCGTGAACAAGGTCGAATACGACTCCAATGACCAGG
ACGTCGCCGAGAGCGACGCCGATGGCAGTGGCAGCAAGCATGGTAAATTC
AGTGCACGGGGTCCGAAAAGTGTGCTTGAAGGCATTGATTGGAATGAGCT
GGGCGCCCGTGTCGGTGGAGTGGCCAGGGGGCTGGGCCGCTACCAGTTTG
CCTGCTTTCTGACCAACGAGGAGACCGATACGCAGGGGGGAATCTGGTTT
GATGCCAAAGCCAAGGAGATCATTGTCTCCTTCCGAGGCACGCAGATGGA
ATGGAAGGATTTGCTGACTGACATGGCGATCTATCAAGAAGGGTTGGATG
GGCCTGAGGACCCGCGGTTGGTGCACGCGGGCTTTCGACGTGCTTTTCGT
TCTATTCAAGGCGGGGTCCTACAGGCCTTGAATTTTATAGCTTCCAATTT
GGTGGAGGATGGATGGTCTATAGACGTGTGTGGGCACTCCTTAGGGGGGG
CACTGGCGTGCTTGATGGCCCACGAGATCGATCGGCGCATGCCTGCCTTG
GTAGAGGAAGGGAGGCTGAATGTTTTTTCCTTTGGGGCGCCAAGGGTGGG
TAACACGGCGTTTTGTGAGGACTATGACAAGCGGCTTAAAAACCAGAGCT
TTCGAATAGTGAATGGGTTGGACGTTGTTGCGCGAATGCCACGAGGGTCG
GGTGAATCTTCCCTATTGATGGAATACAGTCATTGCGGGCGCACGGTACT
ACTGACCGAGACAGAAGACGGTCGATTTAGTGTATGGGTGGAGGGCGAAA
GTGAAGGCACTTGCCCACTCAAAGAAGGAGAGGCATTTACGAGCACGACG
CCTACGAGTCAATCCATGGCGGAGATTATCAAGAAGGCCGCAATAGAAGC
GATGGAGAGAGGGAAGGGAGGTCTTGAGTTTGAAACTCCATTTAGCAAGG
CAACCTTTGCGAACGGTACAGCTGCCTCAGTGCAAGAAATGCTGCGGGCC
GCCGGAAACTTTACAAACCTTCAAGCTATGCTCTCCTCTACGTCCTCCAT
CGACTACTTCTCCTCTTTCACCTCCATTCCTTCCTCGCCTTCTCTGGGGC
CATTTGGACAGCTGAGCTTGCAAACGGATTTGCAGCAAATCGCCAATGCA
GTGTTTGGAAGCGCGATGAACTCGACAGCTACGATTGGCAAGAGCTTGGG
GTTGAATGAGACGTTTGTAGATAGTGAGTTGAGTTTAATTCGAGGGTTGG
TGTACGGAGATGCATTAGCCCACCATATGGAGCCGCTTTATTATGTTGCG
CTTGAGAAAGCGTTTGGGATTGCGATGGAGGAAGGGGTGGATGACAAGAA
AGGGGAAGAGAAGGGGGATGGTGCAACGAAGAAGTACGGATAATGAGTCA
CACGAAAAGGCAAGGAAACGGTCAGTACACTAGCTTACTTGGCAAGTAAA
ATGTATGAAATTATGTGAGCATGCATTGAAGTTTAAAAACTGGTTTGCAT
AGAAATACATATTT

Coding sequence (CDS) from alignment at scaffold_10:155373..157686+

>mRNA_4270 ID=mRNA_4270|Name=jgi.p|Nanoce1779_2|588568|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at scaffold_10:155373..157686+ (Nannochloropsis oceanica)
ATGGGGGCTTCTGTCTTACGCAGACTGGTGCTGCTTTTACTGCCGCTGCA
TGGAGCAACTTTCTTCCTTTCCAGCAGCAGCCAGTATCATCGTCGCTCAC
CACCAAGCCCGCAGCACCATCGACACTCTTATCCACTGCACGCCACTACC
GACGAAATACTCACCGCCACCGCCCCTAAGCCCACGCCTGACCTCTGCAT
CTTTGATGCTCCCAAGGCCGTTCGCCTGGCCGCCTTTTCCTTTGCTACTT
ACGGAGATCCCACTGGCTCCCGATGGCTGCGTCTGCCCGACGGCACTGAC
CTTGGCTTCCAATCTGATGACTTGGTGCGCAACAACTTTAAAAGTTTGCT
GTTGGTTCACATCCTGCAAGCCCGCAACCTGCCAGAAGAACGGGGCGGGC
TTATTGAGAGGGCTCTCTCAGGCTTTAGCTGCGACCCCTACGTCATCACG
GCCGTCAACAATTCGTGGGGTGCAGATATCGCCATCACTAAGGCCAAGAG
TGCTAATTCCAATCCCGATTTTTTCCAGCGCTTTTTCTTGTACGTGGAAG
ATCCCAACACAACGGATCTAGAGCTAACTGTCAAGGATAAGAACCTGCTG
AAAGGCGATGATGTTATTGGGCACTGTCTGGTGCCCTTGACGCAGCTGCT
CGACGGGTCAAAAGGAGAGGGCGCACCTGGTCAAGAAGGCGTGATGGAGT
GGGCGGGGACCTTGCAAATCGAAAGCGTGCACAAGGATTTTAAGGATGCT
GGCACCATTGACGTAGAGCTGCAGCTGGTGCCCTTGAATGGAGAGGCCGT
GAACAAGGTCGAATACGACTCCAATGACCAGGACGTCGCCGAGAGCGACG
CCGATGGCAGTGGCAGCAAGCATGGTAAATTCAGTGCACGGGGTCCGAAA
AGTGTGCTTGAAGGCATTGATTGGAATGAGCTGGGCGCCCGTGTCGGTGG
AGTGGCCAGGGGGCTGGGCCGCTACCAGTTTGCCTGCTTTCTGACCAACG
AGGAGACCGATACGCAGGGGGGAATCTGGTTTGATGCCAAAGCCAAGGAG
ATCATTGTCTCCTTCCGAGGCACGCAGATGGAATGGAAGGATTTGCTGAC
TGACATGGCGATCTATCAAGAAGGGTTGGATGGGCCTGAGGACCCGCGGT
TGGTGCACGCGGGCTTTCGACGTGCTTTTCGTTCTATTCAAGGCGGGGTC
CTACAGGCCTTGAATTTTATAGCTTCCAATTTGGTGGAGGATGGATGGTC
TATAGACGTGTGTGGGCACTCCTTAGGGGGGGCACTGGCGTGCTTGATGG
CCCACGAGATCGATCGGCGCATGCCTGCCTTGGTAGAGGAAGGGAGGCTG
AATGTTTTTTCCTTTGGGGCGCCAAGGGTGGGTAACACGGCGTTTTGTGA
GGACTATGACAAGCGGCTTAAAAACCAGAGCTTTCGAATAGTGAATGGGT
TGGACGTTGTTGCGCGAATGCCACGAGGGTCGGGTGAATCTTCCCTATTG
ATGGAATACAGTCATTGCGGGCGCACGGTACTACTGACCGAGACAGAAGA
CGGTCGATTTAGTGTATGGGTGGAGGGCGAAAGTGAAGGCACTTGCCCAC
TCAAAGAAGGAGAGGCATTTACGAGCACGACGCCTACGAGTCAATCCATG
GCGGAGATTATCAAGAAGGCCGCAATAGAAGCGATGGAGAGAGGGAAGGG
AGGTCTTGAGTTTGAAACTCCATTTAGCAAGGCAACCTTTGCGAACGGTA
CAGCTGCCTCAGTGCAAGAAATGCTGCGGGCCGCCGGAAACTTTACAAAC
CTTCAAGCTATGCTCTCCTCTACGTCCTCCATCGACTACTTCTCCTCTTT
CACCTCCATTCCTTCCTCGCCTTCTCTGGGGCCATTTGGACAGCTGAGCT
TGCAAACGGATTTGCAGCAAATCGCCAATGCAGTGTTTGGAAGCGCGATG
AACTCGACAGCTACGATTGGCAAGAGCTTGGGGTTGAATGAGACGTTTGT
AGATAGTGAGTTGAGTTTAATTCGAGGGTTGGTGTACGGAGATGCATTAG
CCCACCATATGGAGCCGCTTTATTATGTTGCGCTTGAGAAAGCGTTTGGG
ATTGCGATGGAGGAAGGGGTGGATGACAAGAAAGGGGAAGAGAAGGGGGA
TGGTGCAACGAAGAAGTACGGATAA

Synonyms

Publications