jgi.p|Nanoce1779_2|588554, mRNA_4266 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588554
Unique NamemRNA_4266
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1473
Alignment locationscaffold_10:146479..147951 +

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Properties
Property NameValue
TranscriptId588640
TrackFilteredModels2
ProteinId588554
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:146479..147951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588554gene_4266Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588554mRNA_4266-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4266CDS_4266Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4266 ID=mRNA_4266|Name=jgi.p|Nanoce1779_2|588554|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
CAGGCTTTTTCACCACTGTTACCGCCGCCGCCCTTACCGATCCTTCGGCC
CGCCTGAAAATGACGCCCAACACTTCCGTCTTCCATGACCTCCGCGCCGC
CGCAGCCGACCTCCTGGCGGAGCAGCAGCAGCAGCAGCCGCCCGAGACTA
GAGGCGCCGTCCACATCGACCACCAGGCCCTGGATCGACTGGCGGCCCGC
TTGTCTCTTTGTGAAGTCCGTTCTAAAGTGAACAGGGTGGGGCTGCCGCT
CAAGTTCGCTCGGCCGATGGATGAACTCAATTTCCACGCCATGCTGGCGT
TGCTAAGCTTTGGAGGGGCGTACGACGGCGGCAACGCGGAGCACCCACGG
ATGCTGGCAGAATCGGCCCGAGACACGGTCCTCTTTGGTCTCATTGGTCT
GCATCTGAGCAAGGCCGACATGCATGCGGGATTTCTTCTGACGGTGACGC
GCTCGGACGTGTCCAGTTACTTTGGGATCGACGGCATGGTGAGTGTTCCT
CACGAGAGCATGCCTGCCATCCACGTAGAGCGTCCTGGGCCGCTCTGTCA
GTTTGTCAATGACTTGGTCTGGATGATGAATCAGGTGGGGGAGCGCTTAA
AGGAGCTGGGGGAGCCTGACCTGGCTCATTTCATCTTGAGTTCTATGCGG
GGGGAGGGTGTTCCTACAGCCGCTCGCCTGGTGACGGCATTGGACGTAGC
CTTTCCCACCACCTTCGGCGCGCCTTTGCCTCTGCCTCGGCTGCTTAAAA
CGAAAAACGATGACAAGGGTTTTGTGTGTCACAAAAAGTCCTTGATGCTC
GTCAGCGAGCTGTACCATCGTCTCCGCCACACTTTTTCGGATTTGGCCTT
CCAAGACTTTACCCAAGCTCCGGGGTACGTCACACCTGCCATTATCACCC
ACCTTATCCGCCTCGGTGTGCTTCATCCTACCCGCAGCCAGGACGAAGAC
GACAAGGCGGACGCAGCAGCTGGGGCGTCTATGATGGGGAAGCCTGACAG
GGTAGCGCCTTTGACGGCGGCGGCTATTTTGGCTGTGGATGGGTTGGCGC
TACGGTTAGCAGAGGGAGCGACGGAACGAGAAGGTGGTGGAAGTGGGCAT
CCGGACGCATCAGAGGTGCTGGCACCGCTGGATTTAAGTTATTATTTGGA
TGATATCTGGTCGAAGGAGGATGGGCAAGAGCAAGTGCAGCGGCAGCAGC
AGCAGCAAGTGAAGAGGGAAGACGCGGAGCAATTGACACCGAAAGGGGAG
GAGCAAGAGCCGCAGACGACGCAACAACAGAAAGGAGTGGTGGGGGGATT
GAATGCACTTACGTTTGTACCTCCGCAAGGGCAGACAGTTATGTAGTCCC
GGCGAAAACAAAAACACATGCATAGACAACATTAAAAGAGGAAGGACTTA
CAATAACAAGACCATCACACAATCGTTCTAGATGTGTCACGCGACAATCA
TGAATTATTTATATATTATGCAC
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protein sequence of jgi.p|Nanoce1779_2|588554

>mRNA_4266-protein ID=mRNA_4266-protein|Name=jgi.p|Nanoce1779_2|588554|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MTPNTSVFHDLRAAAADLLAEQQQQQPPETRGAVHIDHQALDRLAARLSL
CEVRSKVNRVGLPLKFARPMDELNFHAMLALLSFGGAYDGGNAEHPRMLA
ESARDTVLFGLIGLHLSKADMHAGFLLTVTRSDVSSYFGIDGMVSVPHES
MPAIHVERPGPLCQFVNDLVWMMNQVGERLKELGEPDLAHFILSSMRGEG
VPTAARLVTALDVAFPTTFGAPLPLPRLLKTKNDDKGFVCHKKSLMLVSE
LYHRLRHTFSDLAFQDFTQAPGYVTPAIITHLIRLGVLHPTRSQDEDDKA
DAAAGASMMGKPDRVAPLTAAAILAVDGLALRLAEGATEREGGGSGHPDA
SEVLAPLDLSYYLDDIWSKEDGQEQVQRQQQQQVKREDAEQLTPKGEEQE
PQTTQQQKGVVGGLNALTFVPPQGQTVM*
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mRNA from alignment at scaffold_10:146479..147951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4266 ID=mRNA_4266|Name=jgi.p|Nanoce1779_2|588554|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at scaffold_10:146479..147951+ (Nannochloropsis oceanica)
CAGGCTTTTTCACCACTGTTACCGCCGCCGCCCTTACCGATCCTTCGGCC
CGCCTGAAAATGACGCCCAACACTTCCGTCTTCCATGACCTCCGCGCCGC
CGCAGCCGACCTCCTGGCGGAGCAGCAGCAGCAGCAGCCGCCCGAGACTA
GAGGCGCCGTCCACATCGACCACCAGGCCCTGGATCGACTGGCGGCCCGC
TTGTCTCTTTGTGAAGTCCGTTCTAAAGTGAACAGGGTGGGGCTGCCGCT
CAAGTTCGCTCGGCCGATGGATGAACTCAATTTCCACGCCATGCTGGCGT
TGCTAAGCTTTGGAGGGGCGTACGACGGCGGCAACGCGGAGCACCCACGG
ATGCTGGCAGAATCGGCCCGAGACACGGTCCTCTTTGGTCTCATTGGTCT
GCATCTGAGCAAGGCCGACATGCATGCGGGATTTCTTCTGACGGTGACGC
GCTCGGACGTGTCCAGTTACTTTGGGATCGACGGCATGGTGAGTGTTCCT
CACGAGAGCATGCCTGCCATCCACGTAGAGCGTCCTGGGCCGCTCTGTCA
GTTTGTCAATGACTTGGTCTGGATGATGAATCAGGTGGGGGAGCGCTTAA
AGGAGCTGGGGGAGCCTGACCTGGCTCATTTCATCTTGAGTTCTATGCGG
GGGGAGGGTGTTCCTACAGCCGCTCGCCTGGTGACGGCATTGGACGTAGC
CTTTCCCACCACCTTCGGCGCGCCTTTGCCTCTGCCTCGGCTGCTTAAAA
CGAAAAACGATGACAAGGGTTTTGTGTGTCACAAAAAGTCCTTGATGCTC
GTCAGCGAGCTGTACCATCGTCTCCGCCACACTTTTTCGGATTTGGCCTT
CCAAGACTTTACCCAAGCTCCGGGGTACGTCACACCTGCCATTATCACCC
ACCTTATCCGCCTCGGTGTGCTTCATCCTACCCGCAGCCAGGACGAAGAC
GACAAGGCGGACGCAGCAGCTGGGGCGTCTATGATGGGGAAGCCTGACAG
GGTAGCGCCTTTGACGGCGGCGGCTATTTTGGCTGTGGATGGGTTGGCGC
TACGGTTAGCAGAGGGAGCGACGGAACGAGAAGGTGGTGGAAGTGGGCAT
CCGGACGCATCAGAGGTGCTGGCACCGCTGGATTTAAGTTATTATTTGGA
TGATATCTGGTCGAAGGAGGATGGGCAAGAGCAAGTGCAGCGGCAGCAGC
AGCAGCAAGTGAAGAGGGAAGACGCGGAGCAATTGACACCGAAAGGGGAG
GAGCAAGAGCCGCAGACGACGCAACAACAGAAAGGAGTGGTGGGGGGATT
GAATGCACTTACGTTTGTACCTCCGCAAGGGCAGACAGTTATGTAGTCCC
GGCGAAAACAAAAACACATGCATAGACAACATTAAAAGAGGAAGGACTTA
CAATAACAAGACCATCACACAATCGTTCTAGATGTGTCACGCGACAATCA
TGAATTATTTATATATTATGCAC
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Coding sequence (CDS) from alignment at scaffold_10:146479..147951+

>mRNA_4266 ID=mRNA_4266|Name=jgi.p|Nanoce1779_2|588554|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_10:146479..147951+ (Nannochloropsis oceanica)
ATGACGCCCAACACTTCCGTCTTCCATGACCTCCGCGCCGCCGCAGCCGA
CCTCCTGGCGGAGCAGCAGCAGCAGCAGCCGCCCGAGACTAGAGGCGCCG
TCCACATCGACCACCAGGCCCTGGATCGACTGGCGGCCCGCTTGTCTCTT
TGTGAAGTCCGTTCTAAAGTGAACAGGGTGGGGCTGCCGCTCAAGTTCGC
TCGGCCGATGGATGAACTCAATTTCCACGCCATGCTGGCGTTGCTAAGCT
TTGGAGGGGCGTACGACGGCGGCAACGCGGAGCACCCACGGATGCTGGCA
GAATCGGCCCGAGACACGGTCCTCTTTGGTCTCATTGGTCTGCATCTGAG
CAAGGCCGACATGCATGCGGGATTTCTTCTGACGGTGACGCGCTCGGACG
TGTCCAGTTACTTTGGGATCGACGGCATGGTGAGTGTTCCTCACGAGAGC
ATGCCTGCCATCCACGTAGAGCGTCCTGGGCCGCTCTGTCAGTTTGTCAA
TGACTTGGTCTGGATGATGAATCAGGTGGGGGAGCGCTTAAAGGAGCTGG
GGGAGCCTGACCTGGCTCATTTCATCTTGAGTTCTATGCGGGGGGAGGGT
GTTCCTACAGCCGCTCGCCTGGTGACGGCATTGGACGTAGCCTTTCCCAC
CACCTTCGGCGCGCCTTTGCCTCTGCCTCGGCTGCTTAAAACGAAAAACG
ATGACAAGGGTTTTGTGTGTCACAAAAAGTCCTTGATGCTCGTCAGCGAG
CTGTACCATCGTCTCCGCCACACTTTTTCGGATTTGGCCTTCCAAGACTT
TACCCAAGCTCCGGGGTACGTCACACCTGCCATTATCACCCACCTTATCC
GCCTCGGTGTGCTTCATCCTACCCGCAGCCAGGACGAAGACGACAAGGCG
GACGCAGCAGCTGGGGCGTCTATGATGGGGAAGCCTGACAGGGTAGCGCC
TTTGACGGCGGCGGCTATTTTGGCTGTGGATGGGTTGGCGCTACGGTTAG
CAGAGGGAGCGACGGAACGAGAAGGTGGTGGAAGTGGGCATCCGGACGCA
TCAGAGGTGCTGGCACCGCTGGATTTAAGTTATTATTTGGATGATATCTG
GTCGAAGGAGGATGGGCAAGAGCAAGTGCAGCGGCAGCAGCAGCAGCAAG
TGAAGAGGGAAGACGCGGAGCAATTGACACCGAAAGGGGAGGAGCAAGAG
CCGCAGACGACGCAACAACAGAAAGGAGTGGTGGGGGGATTGAATGCACT
TACGTTTGTACCTCCGCAAGGGCAGACAGTTATGTAG
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Synonyms
Publications