jgi.p|Nanoce1779_2|588549, mRNA_4264 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588549
Unique Name	mRNA_4264
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1785
Alignment location	scaffold_10:141932..143716 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588635
Track	FilteredModels2
ProteinId	588549

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:141932..143716 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588549	gene_4264	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588549	mRNA_4264-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4264	CDS_4264	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:141932..143716+
coding sequence from alignment at scaffold_10:141932..143716+

mRNA sequence

>mRNA_4264 ID=mRNA_4264|Name=jgi.p|Nanoce1779_2|588549|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
GGCGGGAAGAAGGAGGGGGCAGAGGATATGGCTGCACGTTTGCGGCATGT
GGTGATGGTGCTGACAAGAGAGTTGGACGGACGGGGAAAGGATTTAGAGA
GAATCTGGGGGGAGGCAATGGCGAATGAGGGGACACATCAGGCAGCGATG
GAGGAGGTGGAGCAAGAGGTGCGATTGTTGAGGAAGGTGCTGCAAGTGTA
TGAAGAAGCTTTGTACGGCGCCCTTACTTTTCCTTCTCCGTTTGTGGAGG
AAGAAGAGGGGGGGAAGATAGAAGGGACAGAAAAAGCGAAGAAAAAGAAG
ACAATGCAGGGTAGTAGGAGTGGGGTGTCTGTGAGTGGAGTGGGAGGGGC
GCATGCTGCGGTGGTGAAAGGGAACGACTTGGCCCGCCGACTGAAGGAGC
ACGTGGAAGGGTTGCGAGCACAAGTGGAAGAGAAGATGGAGGAATGTTGT
GAAATTGAAGAGGCAAGGGGGGTGGAGAGGCGGGAGATATGGGAGGAGAT
GGTGCGGTGGAAGGAGAAGGCAGGGTTGTACTTGCGGTTGTTGACGTCCT
TGGAGGAGGCGGCACGGAGTGTGGTGCTGGTAGGGGTGGGAGAAAGGGGG
AAGACGGCCGCAGAGGATGATAAACATAAATTAAATAATCAGAAGAAAAG
AGCGGAAGGAGCGGACGAGGCGATGAGTGCAATCTCTCCGTTGGGATTGG
AGGTGGCGCTGGAGCTGGAGCAGGGGAGGGGGATGGAGAGTATCAGGGCG
TTGTGTGTGCGACTGCTAGAATACGGTGCGCTGGCGAGGGGGGCAAGGGG
TGAGGCCCGTCAGGAGGTGGGACGGTTGGAGGAGCTGTTGGCAGTGAAGG
AGAAGGAGGGGAGGAGGTTGCGGGAGACCTTGAAAAGGCAGAGTGTGGAG
CTGGTGGGGTTGAGGGAGAAGGTGCGGGCGTCTTATGATGAGGTGACGGT
GTGGAAGGAGAGGCTTATTGGGCAAGAGGCGGATGTGTCGACGTTGGTTT
CGAGCTTGAGTCGCGTGTCGGAAAAGTTGACGCATTTAAGGTCGCAGGGG
GGGGGGATAATTCCGGAGGGAAATGAGTGGGGAGGTGAGGTGGATGAAAG
TGGTGATGGTAGTGATGTGTTGGAGAGGAGCGACTGGAAAAGACTGCGTG
CTTCGCAACTGCAAGGGGAGGAGGCTGACGAGCAGTCGCAGCAGCAGCAG
CAGCAGTATGACCGAGAACACCAGCAACGGATGCGGCAGCTGCATGAGGA
GCAGAAGCAAGAAGTGTGTCGTTTGCAAACCATGGCGGAGGAGCAGGCGA
AGACCATCGAGGCCCTTGCTGCGCGGAATGCTTTGCTTGAGGAGGAAGGA
CAAGAGGGCTGGCCGGAGGAATTTGAGCATATTAAGTCGGCGAAGAAAGC
GGTGGAACAGGAGCTTCATATTCTAAGGCGCGGTTTGGCGGCAAGGGAGA
AGGAGTGGGCGGCTACTTTGAATGCGGTCAACAAAGAGAGGGAGAGGTTG
CAGCGGAAGTGTGGAAAGCAGGAGCAAGCGGTACAGGCTTTGGCAGAGCA
ATTGGATCAGAGCCGTGGTGGATCGAATGTCGGTGTTCTTCACGTGCGAG
GGGAGGAGAGGGAAGAGAAGATGGAGGCAGAGGATGGAATGTGAATGATT
GATAGGAAACAATCTTTACACATTCATGAGTGAGTGTGTGCCTGTGTGTA
CTCATCAGCTTTTGGATGTGGCAACAAAAAGTATGCATGTGTATGTTTTG
TAATTCGAAAGAAACGATTATAATGTGCTTTAAGA

protein sequence of jgi.p|Nanoce1779_2|588549

>mRNA_4264-protein ID=mRNA_4264-protein|Name=jgi.p|Nanoce1779_2|588549|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MAARLRHVVMVLTRELDGRGKDLERIWGEAMANEGTHQAAMEEVEQEVRL
LRKVLQVYEEALYGALTFPSPFVEEEEGGKIEGTEKAKKKKTMQGSRSGV
SVSGVGGAHAAVVKGNDLARRLKEHVEGLRAQVEEKMEECCEIEEARGVE
RREIWEEMVRWKEKAGLYLRLLTSLEEAARSVVLVGVGERGKTAAEDDKH
KLNNQKKRAEGADEAMSAISPLGLEVALELEQGRGMESIRALCVRLLEYG
ALARGARGEARQEVGRLEELLAVKEKEGRRLRETLKRQSVELVGLREKVR
ASYDEVTVWKERLIGQEADVSTLVSSLSRVSEKLTHLRSQGGGIIPEGNE
WGGEVDESGDGSDVLERSDWKRLRASQLQGEEADEQSQQQQQQYDREHQQ
RMRQLHEEQKQEVCRLQTMAEEQAKTIEALAARNALLEEEGQEGWPEEFE
HIKSAKKAVEQELHILRRGLAAREKEWAATLNAVNKERERLQRKCGKQEQ
AVQALAEQLDQSRGGSNVGVLHVRGEEREEKMEAEDGM*

mRNA from alignment at scaffold_10:141932..143716+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4264 ID=mRNA_4264|Name=jgi.p|Nanoce1779_2|588549|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp|location=Sequence derived from alignment at scaffold_10:141932..143716+ (Nannochloropsis oceanica)
GGCGGGAAGAAGGAGGGGGCAGAGGATATGGCTGCACGTTTGCGGCATGT
GGTGATGGTGCTGACAAGAGAGTTGGACGGACGGGGAAAGGATTTAGAGA
GAATCTGGGGGGAGGCAATGGCGAATGAGGGGACACATCAGGCAGCGATG
GAGGAGGTGGAGCAAGAGGTGCGATTGTTGAGGAAGGTGCTGCAAGTGTA
TGAAGAAGCTTTGTACGGCGCCCTTACTTTTCCTTCTCCGTTTGTGGAGG
AAGAAGAGGGGGGGAAGATAGAAGGGACAGAAAAAGCGAAGAAAAAGAAG
ACAATGCAGGGTAGTAGGAGTGGGGTGTCTGTGAGTGGAGTGGGAGGGGC
GCATGCTGCGGTGGTGAAAGGGAACGACTTGGCCCGCCGACTGAAGGAGC
ACGTGGAAGGGTTGCGAGCACAAGTGGAAGAGAAGATGGAGGAATGTTGT
GAAATTGAAGAGGCAAGGGGGGTGGAGAGGCGGGAGATATGGGAGGAGAT
GGTGCGGTGGAAGGAGAAGGCAGGGTTGTACTTGCGGTTGTTGACGTCCT
TGGAGGAGGCGGCACGGAGTGTGGTGCTGGTAGGGGTGGGAGAAAGGGGG
AAGACGGCCGCAGAGGATGATAAACATAAATTAAATAATCAGAAGAAAAG
AGCGGAAGGAGCGGACGAGGCGATGAGTGCAATCTCTCCGTTGGGATTGG
AGGTGGCGCTGGAGCTGGAGCAGGGGAGGGGGATGGAGAGTATCAGGGCG
TTGTGTGTGCGACTGCTAGAATACGGTGCGCTGGCGAGGGGGGCAAGGGG
TGAGGCCCGTCAGGAGGTGGGACGGTTGGAGGAGCTGTTGGCAGTGAAGG
AGAAGGAGGGGAGGAGGTTGCGGGAGACCTTGAAAAGGCAGAGTGTGGAG
CTGGTGGGGTTGAGGGAGAAGGTGCGGGCGTCTTATGATGAGGTGACGGT
GTGGAAGGAGAGGCTTATTGGGCAAGAGGCGGATGTGTCGACGTTGGTTT
CGAGCTTGAGTCGCGTGTCGGAAAAGTTGACGCATTTAAGGTCGCAGGGG
GGGGGGATAATTCCGGAGGGAAATGAGTGGGGAGGTGAGGTGGATGAAAG
TGGTGATGGTAGTGATGTGTTGGAGAGGAGCGACTGGAAAAGACTGCGTG
CTTCGCAACTGCAAGGGGAGGAGGCTGACGAGCAGTCGCAGCAGCAGCAG
CAGCAGTATGACCGAGAACACCAGCAACGGATGCGGCAGCTGCATGAGGA
GCAGAAGCAAGAAGTGTGTCGTTTGCAAACCATGGCGGAGGAGCAGGCGA
AGACCATCGAGGCCCTTGCTGCGCGGAATGCTTTGCTTGAGGAGGAAGGA
CAAGAGGGCTGGCCGGAGGAATTTGAGCATATTAAGTCGGCGAAGAAAGC
GGTGGAACAGGAGCTTCATATTCTAAGGCGCGGTTTGGCGGCAAGGGAGA
AGGAGTGGGCGGCTACTTTGAATGCGGTCAACAAAGAGAGGGAGAGGTTG
CAGCGGAAGTGTGGAAAGCAGGAGCAAGCGGTACAGGCTTTGGCAGAGCA
ATTGGATCAGAGCCGTGGTGGATCGAATGTCGGTGTTCTTCACGTGCGAG
GGGAGGAGAGGGAAGAGAAGATGGAGGCAGAGGATGGAATGTGAATGATT
GATAGGAAACAATCTTTACACATTCATGAGTGAGTGTGTGCCTGTGTGTA
CTCATCAGCTTTTGGATGTGGCAACAAAAAGTATGCATGTGTATGTTTTG
TAATTCGAAAGAAACGATTATAATGTGCTTTAAGA

Coding sequence (CDS) from alignment at scaffold_10:141932..143716+

>mRNA_4264 ID=mRNA_4264|Name=jgi.p|Nanoce1779_2|588549|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at scaffold_10:141932..143716+ (Nannochloropsis oceanica)
ATGGCTGCACGTTTGCGGCATGTGGTGATGGTGCTGACAAGAGAGTTGGA
CGGACGGGGAAAGGATTTAGAGAGAATCTGGGGGGAGGCAATGGCGAATG
AGGGGACACATCAGGCAGCGATGGAGGAGGTGGAGCAAGAGGTGCGATTG
TTGAGGAAGGTGCTGCAAGTGTATGAAGAAGCTTTGTACGGCGCCCTTAC
TTTTCCTTCTCCGTTTGTGGAGGAAGAAGAGGGGGGGAAGATAGAAGGGA
CAGAAAAAGCGAAGAAAAAGAAGACAATGCAGGGTAGTAGGAGTGGGGTG
TCTGTGAGTGGAGTGGGAGGGGCGCATGCTGCGGTGGTGAAAGGGAACGA
CTTGGCCCGCCGACTGAAGGAGCACGTGGAAGGGTTGCGAGCACAAGTGG
AAGAGAAGATGGAGGAATGTTGTGAAATTGAAGAGGCAAGGGGGGTGGAG
AGGCGGGAGATATGGGAGGAGATGGTGCGGTGGAAGGAGAAGGCAGGGTT
GTACTTGCGGTTGTTGACGTCCTTGGAGGAGGCGGCACGGAGTGTGGTGC
TGGTAGGGGTGGGAGAAAGGGGGAAGACGGCCGCAGAGGATGATAAACAT
AAATTAAATAATCAGAAGAAAAGAGCGGAAGGAGCGGACGAGGCGATGAG
TGCAATCTCTCCGTTGGGATTGGAGGTGGCGCTGGAGCTGGAGCAGGGGA
GGGGGATGGAGAGTATCAGGGCGTTGTGTGTGCGACTGCTAGAATACGGT
GCGCTGGCGAGGGGGGCAAGGGGTGAGGCCCGTCAGGAGGTGGGACGGTT
GGAGGAGCTGTTGGCAGTGAAGGAGAAGGAGGGGAGGAGGTTGCGGGAGA
CCTTGAAAAGGCAGAGTGTGGAGCTGGTGGGGTTGAGGGAGAAGGTGCGG
GCGTCTTATGATGAGGTGACGGTGTGGAAGGAGAGGCTTATTGGGCAAGA
GGCGGATGTGTCGACGTTGGTTTCGAGCTTGAGTCGCGTGTCGGAAAAGT
TGACGCATTTAAGGTCGCAGGGGGGGGGGATAATTCCGGAGGGAAATGAG
TGGGGAGGTGAGGTGGATGAAAGTGGTGATGGTAGTGATGTGTTGGAGAG
GAGCGACTGGAAAAGACTGCGTGCTTCGCAACTGCAAGGGGAGGAGGCTG
ACGAGCAGTCGCAGCAGCAGCAGCAGCAGTATGACCGAGAACACCAGCAA
CGGATGCGGCAGCTGCATGAGGAGCAGAAGCAAGAAGTGTGTCGTTTGCA
AACCATGGCGGAGGAGCAGGCGAAGACCATCGAGGCCCTTGCTGCGCGGA
ATGCTTTGCTTGAGGAGGAAGGACAAGAGGGCTGGCCGGAGGAATTTGAG
CATATTAAGTCGGCGAAGAAAGCGGTGGAACAGGAGCTTCATATTCTAAG
GCGCGGTTTGGCGGCAAGGGAGAAGGAGTGGGCGGCTACTTTGAATGCGG
TCAACAAAGAGAGGGAGAGGTTGCAGCGGAAGTGTGGAAAGCAGGAGCAA
GCGGTACAGGCTTTGGCAGAGCAATTGGATCAGAGCCGTGGTGGATCGAA
TGTCGGTGTTCTTCACGTGCGAGGGGAGGAGAGGGAAGAGAAGATGGAGG
CAGAGGATGGAATGTGA

Synonyms

Publications