jgi.p|Nanoce1779_2|588544, mRNA_4263 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588544
Unique NamemRNA_4263
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1088
Alignment locationscaffold_10:137911..138998 -

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Properties
Property NameValue
TranscriptId588630
TrackFilteredModels2
ProteinId588544
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:137911..138998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588544gene_4263Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588544mRNA_4263-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4263CDS_4263Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4263 ID=mRNA_4263|Name=jgi.p|Nanoce1779_2|588544|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp
AAGTAGAAAAAGAGGTGGAAATGTAGCTTTATCGAGGGTCCTTTGAAGAC
ACATCTCCCGCCTTGTTCCTCCCCCAGCCCCAGCCATCTTTCTTGAGTAT
CTAACTCACTCACACATCCAACACAAGAACACCACGCAACCCATAGCCCT
CTACTATGTCCGCTTCCTCGCATTTCTGGGGTGGCAGCCGCCTGCTCCAA
GGCCTGGTCCGGAGAAGAAGTAGCGGTCCCGGCACCACAGGCCAAAACCT
CCTCCCCTTTGCTCCATGCTTCACGAATAGCACAACGTCGACCGCCGCTT
CTTTTTCCTCCGCCACTGCAGCAGCCACCGCTAGCACACCTCCCAGCAGT
ATTAAGAGTGAGCTTGGGCGCGTGGTGAAGCTGTCGTCCAATTCTCGGCT
TGCAAATAGGGACGACATAAAGGCCGCCGTGACGACGGCGTTGGAAGGAG
GGCAAGTCAAGACCTTGGACCCAATCCTCTTCAAGGGTGTCTACCCTAGT
AATGCCTGGTTAGTAGAGCTGTCCTCTCGTGAGGCAGCACATCGGCTGGT
GCGATTTGGTCAGATTCATGCGGCAGGCGGGGTGATGAAGGTGGAGGAGC
TGAGGGAGGAAGAGGCAGCGCGACTTCAAGTGGCATCGGAGTTAGGATTG
GACGATTGCTGCATTCAGTTACAGCACGTCCCGTTAGGCATGGGCATTGA
TGAGGTGGCTTATTTCTTCCGAAATTTTCAATTGTCTCCGAAGGGGATTC
GGCAGGTAGAGACGACCATGCGACAGCCAAGCGTGGCGTGGTACAAGAAG
ACGGGCGGGGGACGAATGGGCTCGTCTGTGTTCTTGGTACGGTTCGCCAC
AGCGGACGAGGCACAACGTGCTATTCGAGAACGGCAGTTTGAGAAGTGGG
GGGATAGGAGGATACAGATTATTCCGTACAAGTAAAATAAAGATGAAAGA
GTCGGAGGAAGTGTGGACTACAGTGAGGGAGGTGGAGGAGGGGAATGAAT
GTGGAATCAACTTGGGCACGTCTGTGAAAAAAAAGCTAGCACCATCAGGA
AGATAAAAAACAAGGAACATTACGAAACAGCAAGAGGA
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protein sequence of jgi.p|Nanoce1779_2|588544

>mRNA_4263-protein ID=mRNA_4263-protein|Name=jgi.p|Nanoce1779_2|588544|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSASSHFWGGSRLLQGLVRRRSSGPGTTGQNLLPFAPCFTNSTTSTAASF
SSATAAATASTPPSSIKSELGRVVKLSSNSRLANRDDIKAAVTTALEGGQ
VKTLDPILFKGVYPSNAWLVELSSREAAHRLVRFGQIHAAGGVMKVEELR
EEEAARLQVASELGLDDCCIQLQHVPLGMGIDEVAYFFRNFQLSPKGIRQ
VETTMRQPSVAWYKKTGGGRMGSSVFLVRFATADEAQRAIRERQFEKWGD
RRIQIIPYK*
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mRNA from alignment at scaffold_10:137911..138998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4263 ID=mRNA_4263|Name=jgi.p|Nanoce1779_2|588544|organism=Nannochloropsis oceanica|type=mRNA|length=1088bp|location=Sequence derived from alignment at scaffold_10:137911..138998- (Nannochloropsis oceanica)
AAGTAGAAAAAGAGGTGGAAATGTAGCTTTATCGAGGGTCCTTTGAAGAC
ACATCTCCCGCCTTGTTCCTCCCCCAGCCCCAGCCATCTTTCTTGAGTAT
CTAACTCACTCACACATCCAACACAAGAACACCACGCAACCCATAGCCCT
CTACTATGTCCGCTTCCTCGCATTTCTGGGGTGGCAGCCGCCTGCTCCAA
GGCCTGGTCCGGAGAAGAAGTAGCGGTCCCGGCACCACAGGCCAAAACCT
CCTCCCCTTTGCTCCATGCTTCACGAATAGCACAACGTCGACCGCCGCTT
CTTTTTCCTCCGCCACTGCAGCAGCCACCGCTAGCACACCTCCCAGCAGT
ATTAAGAGTGAGCTTGGGCGCGTGGTGAAGCTGTCGTCCAATTCTCGGCT
TGCAAATAGGGACGACATAAAGGCCGCCGTGACGACGGCGTTGGAAGGAG
GGCAAGTCAAGACCTTGGACCCAATCCTCTTCAAGGGTGTCTACCCTAGT
AATGCCTGGTTAGTAGAGCTGTCCTCTCGTGAGGCAGCACATCGGCTGGT
GCGATTTGGTCAGATTCATGCGGCAGGCGGGGTGATGAAGGTGGAGGAGC
TGAGGGAGGAAGAGGCAGCGCGACTTCAAGTGGCATCGGAGTTAGGATTG
GACGATTGCTGCATTCAGTTACAGCACGTCCCGTTAGGCATGGGCATTGA
TGAGGTGGCTTATTTCTTCCGAAATTTTCAATTGTCTCCGAAGGGGATTC
GGCAGGTAGAGACGACCATGCGACAGCCAAGCGTGGCGTGGTACAAGAAG
ACGGGCGGGGGACGAATGGGCTCGTCTGTGTTCTTGGTACGGTTCGCCAC
AGCGGACGAGGCACAACGTGCTATTCGAGAACGGCAGTTTGAGAAGTGGG
GGGATAGGAGGATACAGATTATTCCGTACAAGTAAAATAAAGATGAAAGA
GTCGGAGGAAGTGTGGACTACAGTGAGGGAGGTGGAGGAGGGGAATGAAT
GTGGAATCAACTTGGGCACGTCTGTGAAAAAAAAGCTAGCACCATCAGGA
AGATAAAAAACAAGGAACATTACGAAACAGCAAGAGGA
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Coding sequence (CDS) from alignment at scaffold_10:137911..138998-

>mRNA_4263 ID=mRNA_4263|Name=jgi.p|Nanoce1779_2|588544|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_10:137911..138998- (Nannochloropsis oceanica)
ATGTCCGCTTCCTCGCATTTCTGGGGTGGCAGCCGCCTGCTCCAAGGCCT
GGTCCGGAGAAGAAGTAGCGGTCCCGGCACCACAGGCCAAAACCTCCTCC
CCTTTGCTCCATGCTTCACGAATAGCACAACGTCGACCGCCGCTTCTTTT
TCCTCCGCCACTGCAGCAGCCACCGCTAGCACACCTCCCAGCAGTATTAA
GAGTGAGCTTGGGCGCGTGGTGAAGCTGTCGTCCAATTCTCGGCTTGCAA
ATAGGGACGACATAAAGGCCGCCGTGACGACGGCGTTGGAAGGAGGGCAA
GTCAAGACCTTGGACCCAATCCTCTTCAAGGGTGTCTACCCTAGTAATGC
CTGGTTAGTAGAGCTGTCCTCTCGTGAGGCAGCACATCGGCTGGTGCGAT
TTGGTCAGATTCATGCGGCAGGCGGGGTGATGAAGGTGGAGGAGCTGAGG
GAGGAAGAGGCAGCGCGACTTCAAGTGGCATCGGAGTTAGGATTGGACGA
TTGCTGCATTCAGTTACAGCACGTCCCGTTAGGCATGGGCATTGATGAGG
TGGCTTATTTCTTCCGAAATTTTCAATTGTCTCCGAAGGGGATTCGGCAG
GTAGAGACGACCATGCGACAGCCAAGCGTGGCGTGGTACAAGAAGACGGG
CGGGGGACGAATGGGCTCGTCTGTGTTCTTGGTACGGTTCGCCACAGCGG
ACGAGGCACAACGTGCTATTCGAGAACGGCAGTTTGAGAAGTGGGGGGAT
AGGAGGATACAGATTATTCCGTACAAGTAA
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Synonyms
Publications