jgi.p|Nanoce1779_2|588542, mRNA_4262 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588542
Unique Name	mRNA_4262
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1852
Alignment location	scaffold_10:136060..137911 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588628
Track	FilteredModels2
ProteinId	588542

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:136060..137911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588542	gene_4262	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588542	mRNA_4262-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4262	CDS_4262	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:136060..137911+
coding sequence from alignment at scaffold_10:136060..137911+

mRNA sequence

>mRNA_4262 ID=mRNA_4262|Name=jgi.p|Nanoce1779_2|588542|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp
TCCCACAAAATCCATACGGAAGCAAACCTACCTTCCTTCCCCTCACAGCC
CATCAATCATGGCTAGCAGCACCACTGCTACGGCAGACCCGACCTCTCCC
CCGGCACCCCAAACCACGCCTGACCCCACTGCCACGAAGAAAGCTAAGAA
GGATCATATCCTGCCGGCCTCTATGGTGGTGCAATTTCAGGACGCCACGG
GGGAACGCACAGGTCCCCAAATAGACATGCCGACGGACTCCACGCCTGCC
CAGTTGGAGTTGCTGATCAACGAGCTCCGGAAAGCCACCGGTCCACCCGA
TGAGCACCAAGGCAAGGTTCCATACTCATGCTATGTCAATGAAGTGGAGG
TTTTAGAGAGCCTGCGGGAGACTTTGGAAAGCCAAGGAATTGCGAGCGGC
GAAGCTATTGTCACTATCAGCTACCAGCCTCTGGCCGTGTTCAGAGTTCG
CCCCGTCGTTCGCTGCACCGACACCATGCCAGGACATACCGAGGCGGTTA
TCCATGTCTCCTTTTCCCCTGACGGTCGGCGTTTAGCCAGTGGGGGAGGG
GATACAACTGTGCGGTTTTGGGACACGGGGACCTGTCTTCCCAAGCATAC
CTGCCAAGGTCACAGGCATCATGTGTTGTGCACGGCCTGGTCTCCGGATG
GCACGCGGTTTGCATCCGCGGACAAGGTGGGGGAAATTCGGCTGTGGGAG
CCTGTGACGGGTTCGGCGGTGGGGCAGCCGTTGAAGGGACATAAGCAATA
CGTCACGTCCTTGGCTTGGGAACCGCTACATTTGAACGATGGAAAGGGGG
AGAGGATGGCTTCGAGTAGTAAGGATGGTACGGTCCGAGTATGGAATGTC
CGGACTGGTGCTTGTGTGACCACCTTGGCGCAGCATGATAACTCTGTGGA
GTGCTGTAAGTGGGGAGGGGAAGGCCTGCTTTACACAGCCTCGCGAGACC
GGACCATTAAAGTATGGGCCTTGAACGGCAGAGAAAACGGAGGGGGGTTC
GGCAAGTTAATCAAAACGCTGGTCGGACACGGGCATCGAGTCAACACCCT
CGCATTAAGCACTGATTATGTCATGCGCACGGGTCCTTTTGACCACACAG
GGAAGCTGGCCCATGAGGCAACGACGGCCATGGAGGCAGCCCAAGCAAAA
TATACTGCCTTTTTGGAAGGGTCGGGAGGGAGAGAAAGGCTTGTATCGGG
CTCGGACGATTTTACGTTATTCTTGTGGGATCCTCTGGCGGAGGAGGGGG
GGAAGAAGCCTGTTGCTAGGATGACGGGGCACCAGCAGGCGGTGAATCAC
ATTTCGTTCTCGCCTGACGGGAGGTATATTGCGAGTGCCTCGTTTGATAA
AAAGGTTAAAATATGGGATGGGAAGACGGGGAGGTTCTTGTCTACGTTGG
TAGGGCATGTTGGGGCGGTGTACATGGTGGCTTGGTCCCCTGATAGCCGG
CTGTTGGTGAGTGCCAGTAAGGACAGCACTTTGAAGTTGTGGGATGCGGC
CAAGGGTGCCAAGGCGAAGGAGACGCTGCCCGGGCATTTTGACGAGGTAT
ATGCGTTAGATTGGGCGCCTAACGGCACGAGTGTGGCCTCTGGGAGTAAG
GATCGAACGATAAAGATTTGGAGAGCATAAGCAGGTTTTCAACGGGAGGG
CGGGAGTGAGGGGAGATATGAGGGAGATAAATGCGCCGTGCAATACTTAG
ATGATTGAAACCAAAAGCATTTTATCTTGTGAATAAGTAGATAGGGTGGT
GGCATAGTAGAGAATCGATTTATACCAGCTACTAGGACAGCAACATGCTG
TACTGGCCCCTGAAACGAGGAGTGAACGAGTGAGACAGAAGATAGACTGC
AT

protein sequence of jgi.p|Nanoce1779_2|588542

>mRNA_4262-protein ID=mRNA_4262-protein|Name=jgi.p|Nanoce1779_2|588542|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MASSTTATADPTSPPAPQTTPDPTATKKAKKDHILPASMVVQFQDATGER
TGPQIDMPTDSTPAQLELLINELRKATGPPDEHQGKVPYSCYVNEVEVLE
SLRETLESQGIASGEAIVTISYQPLAVFRVRPVVRCTDTMPGHTEAVIHV
SFSPDGRRLASGGGDTTVRFWDTGTCLPKHTCQGHRHHVLCTAWSPDGTR
FASADKVGEIRLWEPVTGSAVGQPLKGHKQYVTSLAWEPLHLNDGKGERM
ASSSKDGTVRVWNVRTGACVTTLAQHDNSVECCKWGGEGLLYTASRDRTI
KVWALNGRENGGGFGKLIKTLVGHGHRVNTLALSTDYVMRTGPFDHTGKL
AHEATTAMEAAQAKYTAFLEGSGGRERLVSGSDDFTLFLWDPLAEEGGKK
PVARMTGHQQAVNHISFSPDGRYIASASFDKKVKIWDGKTGRFLSTLVGH
VGAVYMVAWSPDSRLLVSASKDSTLKLWDAAKGAKAKETLPGHFDEVYAL
DWAPNGTSVASGSKDRTIKIWRA*

mRNA from alignment at scaffold_10:136060..137911+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4262 ID=mRNA_4262|Name=jgi.p|Nanoce1779_2|588542|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at scaffold_10:136060..137911+ (Nannochloropsis oceanica)
TCCCACAAAATCCATACGGAAGCAAACCTACCTTCCTTCCCCTCACAGCC
CATCAATCATGGCTAGCAGCACCACTGCTACGGCAGACCCGACCTCTCCC
CCGGCACCCCAAACCACGCCTGACCCCACTGCCACGAAGAAAGCTAAGAA
GGATCATATCCTGCCGGCCTCTATGGTGGTGCAATTTCAGGACGCCACGG
GGGAACGCACAGGTCCCCAAATAGACATGCCGACGGACTCCACGCCTGCC
CAGTTGGAGTTGCTGATCAACGAGCTCCGGAAAGCCACCGGTCCACCCGA
TGAGCACCAAGGCAAGGTTCCATACTCATGCTATGTCAATGAAGTGGAGG
TTTTAGAGAGCCTGCGGGAGACTTTGGAAAGCCAAGGAATTGCGAGCGGC
GAAGCTATTGTCACTATCAGCTACCAGCCTCTGGCCGTGTTCAGAGTTCG
CCCCGTCGTTCGCTGCACCGACACCATGCCAGGACATACCGAGGCGGTTA
TCCATGTCTCCTTTTCCCCTGACGGTCGGCGTTTAGCCAGTGGGGGAGGG
GATACAACTGTGCGGTTTTGGGACACGGGGACCTGTCTTCCCAAGCATAC
CTGCCAAGGTCACAGGCATCATGTGTTGTGCACGGCCTGGTCTCCGGATG
GCACGCGGTTTGCATCCGCGGACAAGGTGGGGGAAATTCGGCTGTGGGAG
CCTGTGACGGGTTCGGCGGTGGGGCAGCCGTTGAAGGGACATAAGCAATA
CGTCACGTCCTTGGCTTGGGAACCGCTACATTTGAACGATGGAAAGGGGG
AGAGGATGGCTTCGAGTAGTAAGGATGGTACGGTCCGAGTATGGAATGTC
CGGACTGGTGCTTGTGTGACCACCTTGGCGCAGCATGATAACTCTGTGGA
GTGCTGTAAGTGGGGAGGGGAAGGCCTGCTTTACACAGCCTCGCGAGACC
GGACCATTAAAGTATGGGCCTTGAACGGCAGAGAAAACGGAGGGGGGTTC
GGCAAGTTAATCAAAACGCTGGTCGGACACGGGCATCGAGTCAACACCCT
CGCATTAAGCACTGATTATGTCATGCGCACGGGTCCTTTTGACCACACAG
GGAAGCTGGCCCATGAGGCAACGACGGCCATGGAGGCAGCCCAAGCAAAA
TATACTGCCTTTTTGGAAGGGTCGGGAGGGAGAGAAAGGCTTGTATCGGG
CTCGGACGATTTTACGTTATTCTTGTGGGATCCTCTGGCGGAGGAGGGGG
GGAAGAAGCCTGTTGCTAGGATGACGGGGCACCAGCAGGCGGTGAATCAC
ATTTCGTTCTCGCCTGACGGGAGGTATATTGCGAGTGCCTCGTTTGATAA
AAAGGTTAAAATATGGGATGGGAAGACGGGGAGGTTCTTGTCTACGTTGG
TAGGGCATGTTGGGGCGGTGTACATGGTGGCTTGGTCCCCTGATAGCCGG
CTGTTGGTGAGTGCCAGTAAGGACAGCACTTTGAAGTTGTGGGATGCGGC
CAAGGGTGCCAAGGCGAAGGAGACGCTGCCCGGGCATTTTGACGAGGTAT
ATGCGTTAGATTGGGCGCCTAACGGCACGAGTGTGGCCTCTGGGAGTAAG
GATCGAACGATAAAGATTTGGAGAGCATAAGCAGGTTTTCAACGGGAGGG
CGGGAGTGAGGGGAGATATGAGGGAGATAAATGCGCCGTGCAATACTTAG
ATGATTGAAACCAAAAGCATTTTATCTTGTGAATAAGTAGATAGGGTGGT
GGCATAGTAGAGAATCGATTTATACCAGCTACTAGGACAGCAACATGCTG
TACTGGCCCCTGAAACGAGGAGTGAACGAGTGAGACAGAAGATAGACTGC
AT

Coding sequence (CDS) from alignment at scaffold_10:136060..137911+

>mRNA_4262 ID=mRNA_4262|Name=jgi.p|Nanoce1779_2|588542|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_10:136060..137911+ (Nannochloropsis oceanica)
ATGGCTAGCAGCACCACTGCTACGGCAGACCCGACCTCTCCCCCGGCACC
CCAAACCACGCCTGACCCCACTGCCACGAAGAAAGCTAAGAAGGATCATA
TCCTGCCGGCCTCTATGGTGGTGCAATTTCAGGACGCCACGGGGGAACGC
ACAGGTCCCCAAATAGACATGCCGACGGACTCCACGCCTGCCCAGTTGGA
GTTGCTGATCAACGAGCTCCGGAAAGCCACCGGTCCACCCGATGAGCACC
AAGGCAAGGTTCCATACTCATGCTATGTCAATGAAGTGGAGGTTTTAGAG
AGCCTGCGGGAGACTTTGGAAAGCCAAGGAATTGCGAGCGGCGAAGCTAT
TGTCACTATCAGCTACCAGCCTCTGGCCGTGTTCAGAGTTCGCCCCGTCG
TTCGCTGCACCGACACCATGCCAGGACATACCGAGGCGGTTATCCATGTC
TCCTTTTCCCCTGACGGTCGGCGTTTAGCCAGTGGGGGAGGGGATACAAC
TGTGCGGTTTTGGGACACGGGGACCTGTCTTCCCAAGCATACCTGCCAAG
GTCACAGGCATCATGTGTTGTGCACGGCCTGGTCTCCGGATGGCACGCGG
TTTGCATCCGCGGACAAGGTGGGGGAAATTCGGCTGTGGGAGCCTGTGAC
GGGTTCGGCGGTGGGGCAGCCGTTGAAGGGACATAAGCAATACGTCACGT
CCTTGGCTTGGGAACCGCTACATTTGAACGATGGAAAGGGGGAGAGGATG
GCTTCGAGTAGTAAGGATGGTACGGTCCGAGTATGGAATGTCCGGACTGG
TGCTTGTGTGACCACCTTGGCGCAGCATGATAACTCTGTGGAGTGCTGTA
AGTGGGGAGGGGAAGGCCTGCTTTACACAGCCTCGCGAGACCGGACCATT
AAAGTATGGGCCTTGAACGGCAGAGAAAACGGAGGGGGGTTCGGCAAGTT
AATCAAAACGCTGGTCGGACACGGGCATCGAGTCAACACCCTCGCATTAA
GCACTGATTATGTCATGCGCACGGGTCCTTTTGACCACACAGGGAAGCTG
GCCCATGAGGCAACGACGGCCATGGAGGCAGCCCAAGCAAAATATACTGC
CTTTTTGGAAGGGTCGGGAGGGAGAGAAAGGCTTGTATCGGGCTCGGACG
ATTTTACGTTATTCTTGTGGGATCCTCTGGCGGAGGAGGGGGGGAAGAAG
CCTGTTGCTAGGATGACGGGGCACCAGCAGGCGGTGAATCACATTTCGTT
CTCGCCTGACGGGAGGTATATTGCGAGTGCCTCGTTTGATAAAAAGGTTA
AAATATGGGATGGGAAGACGGGGAGGTTCTTGTCTACGTTGGTAGGGCAT
GTTGGGGCGGTGTACATGGTGGCTTGGTCCCCTGATAGCCGGCTGTTGGT
GAGTGCCAGTAAGGACAGCACTTTGAAGTTGTGGGATGCGGCCAAGGGTG
CCAAGGCGAAGGAGACGCTGCCCGGGCATTTTGACGAGGTATATGCGTTA
GATTGGGCGCCTAACGGCACGAGTGTGGCCTCTGGGAGTAAGGATCGAAC
GATAAAGATTTGGAGAGCATAA

Synonyms

Publications