Properties
| Property Name | Value |
|---|
| TranscriptId | 630234 |
| Track | FilteredModels2 |
| ProteinId | 630148 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:132442..135817 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4261 ID=mRNA_4261|Name=jgi.p|Nanoce1779_2|630148|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
CAGACATGCTGCATGCAGGCACGTGATTTGTTCGCGTGTGTGCTTTGCGC
TCTTGCAACATTGCTGATCATAGGGTGAGAAGGATAAAAAGGACGAGGAA
TTGAGGCAGCTTGTCAGAAGCTGGAACGCGCGCGTCCCTACCGCCTTCGC
AAAATGTATCATAAAGCAAGGCGCGTCACATCAAGGACACGCACCCCTTT
CACGCATTCCCGTACCCGCACATCACGACAGACCAGACAGTGGAAGTAGT
TTACGACAAATTGTAATATGGGGCGGATTTCCAATGCAGCGACATCGTAC
TTGGGTGTCGAGGGTCTATCCCAGACGAGCCGGAGGACCTTGTTGCAGAG
CTTGCTAGATCCTTGTCCCACGCGGAACTTGGAGAAGGCGGGCAAGATTA
ATTGGCACCCGGAATGTGCGTCGTTGGTGGCGCTGCGGACGGAAAGTGAT
GGGAATTGTCTGGCGCATGCTGCTTCGTTGGGCTGTTGGGGAATACATGA
TCGGAAGCTGTTGCTCCGAAATGCGATACGCTCTTTTTTGGTGGAAAGTG
TCCAAGGACAAGGAAAGACAACAGGCAGAAATCGCTTGCTGCGTTTGATT
CGCAAATCATGGGAGCAGGAATTGGGGAAGCATGGGGTAGTGCTAGAGAA
GGAAGCTTTTGACGTCGAGTGGGCAGTCCTGGCAAAGCAAGCAGAGAATG
GAATGATGGTGGATGGCCTGGCAGCCACGACAGGAAGCAACAACGACAAA
TATCTTCAACAGTTTCAAACACCTCAATCGCCGCAGTTCCCCCAGAGGCA
ACAGCTGCAGCAGCCAGAGAAGAAGGGTGGGACTAGCAACGATAGCTTCG
CCTACCTGGAAGCCGCCCACATCTATATTCTCGCTCACGTCCTCCGTCGG
CCCCTCATTGTCTTTGCAACTGACTGGACGGATGCCAAGGGCCGACAACT
CGCTTCCGCCGAGGAGATTGCAGGTGTCTATCTTCCTTTAGAACTGCCAC
GATACGTCTGCTCTCGCACGCCCTTGCTCTTGGCCTATGATTCGTTTCAT
TTTTCTCCCTTGGTGCCTGTGGACCCTTCGCGGCTCTCCCAGGTACCGTT
GGTAATAAGCGGTACACAGCGCGATCAGCTGTTGCCGCTACCTTTTTATG
CGCCGAGTGAACGGAACATCCCTTTGCGGGCGGCAATGCTGAAGCATTAC
TTAGACTGTGATGTGTTGGCTGAGGGGTTGTTGGTTGTGAAGATTGATGA
TAGTAACTCCACAATGACGCGAACGGCGCATGCTACTTCGCCATTTTCTG
CCTCCTCATTTCCCGCGGATGGGCTGATGTCTTTATTGCTAAGTAACGTG
GTTGAGGACGAGGAGTTTCAGCAGAACAAGACCATCCTTCCTCACGGGCG
GGGCTTGTCTCGTTCACCAGCAGCACCATTAGATGCAAAGATGGAAGCTC
CCGCAATCACCCCGCCTTTGAGGCACAACTGGCTCGCGGCGCTACGTTTT
ACTTAATCAAATGGCAACCTTGGTTCCATGCAAATAAAGAGTTCATTATT
TCCTTCACAGTGAAATATACAAAGCCACACTATACATGATGAAAAGCATC
GAGGACGCGAGGGATACGAAAGAAAATGAAAGGAAAGAGAAAATAGAAAA
AAACCGAAAAGAGTACGACAAGCACTGTCGCTGCAGTATTGCATCATTAG
GATGACAATGAGGGCAATTAAAACATATTATAGCACAAGTAAGAATTTTG
CAGCATGAATGGACATGTGTAGCAGACAATCAAAAGACCGCAAGATAGGC
AAATGGGCACCCTATTAGCCTAACTTTGTAAAAAAGTAGAGTAAACTTCA
AGGCATCTACACGGGGTTGGAAACGTCAAAGAATGAAATAAAGACTATCC
ATGAA back to topprotein sequence of jgi.p|Nanoce1779_2|630148 >mRNA_4261-protein ID=mRNA_4261-protein|Name=jgi.p|Nanoce1779_2|630148|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MGRISNAATSYLGVEGLSQTSRRTLLQSLLDPCPTRNLEKAGKINWHPEC
ASLVALRTESDGNCLAHAASLGCWGIHDRKLLLRNAIRSFLVESVQGQGK
TTGRNRLLRLIRKSWEQELGKHGVVLEKEAFDVEWAVLAKQAENGMMVDG
LAATTGSNNDKYLQQFQTPQSPQFPQRQQLQQPEKKGGTSNDSFAYLEAA
HIYILAHVLRRPLIVFATDWTDAKGRQLASAEEIAGVYLPLELPRYVCSR
TPLLLAYDSFHFSPLVPVDPSRLSQVPLVISGTQRDQLLPLPFYAPSERN
IPLRAAMLKHYLDCDVLAEGLLVVKIDDSNSTMTRTAHATSPFSASSFPA
DGLMSLLLSNVVEDEEFQQNKTILPHGRGLSRSPAAPLDAKMEAPAITPP
LRHNWLAALRFT* back to topmRNA from alignment at scaffold_10:132442..135817- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4261 ID=mRNA_4261|Name=jgi.p|Nanoce1779_2|630148|organism=Nannochloropsis oceanica|type=mRNA|length=3376bp|location=Sequence derived from alignment at scaffold_10:132442..135817- (Nannochloropsis oceanica)
CAGACATGCTGCATGCAGGCACGTGATTTGTTCGCGTGTGTGCTTTGCGC
TCTTGCAACATTGCTGATCATAGGGTGAGAAGGATAAAAAGGACGAGGAA
TTGAGGCAGCTTGTCAGAAGCTGGAACGCGCGCGTCCCTACCGCCTTCGC
AAAATGTATCATAAAGCAAGGCGCGTCACATCAAGGACACGCACCCCTTT
CACGCATTCCCGTACCCGCACATCACGACAGACCAGACAGTGGAAGTAGT
TTACGACAAATTGTAATATGGGGCGGATTTCCAATGCAGCGACATCGTAC
TTGGGTGTCGGTAAGTCTCACTCAAGCCCTTCAGCTGTTTATGTGCCTTT
CCCTTTTGCTGACGTTCCCCCCATCCTCTCATATTTCAGCCAAGAAAGAG
AAGTCCAACGCCCGCGCCGACAGTATAGGTAGCAGTACTTCATCGTATCT
GTCCACTTCTGCCCCTCCCATGCTCCACCCTTCTCCTGCCTCGACCCCGC
AGCACGCCGCGCCGCGCCGACTCACTCGGACGTTATCCTTTCGCGGGGGC
GACGATGTAACCGAGGCCCTACAAATCGAGCTGGAGCGTTCTGTATTGCA
AGTCATTAATGTGCCAATCGAGAGACAAAAGAATGGAAAGGGGCTTTCTG
CGGAGTCGACCGAGCTCTACCCTTCTACCTCATCCACCTCCAGTTCCACC
AACCCAACCCCTAGCCGTTTCGCCTTGGCCAAGCCTAGCGCCGCGCAAAT
GAGTAGGGAATTCCACAGGCCCTTGACATCTTTGGATTGTACACAGGGAC
CATATGTGCTCGGGGATGGGGTCTGCCATGCCACTTTTACCCTTTTCCCC
CTTCTAGAGGGTCTATCCCAGACGAGCCGGAGGACCTTGTTGCAGAGCTT
GCTAGATCCTTGTCCCACGCGGAACTTGGAGAAGGCGGGCAAGATTAATT
GGCACCCGGAATGTGCGTCGTTGGTGGCGCTGCGGACGGAAAGTGATGGG
AATTGTCTGGCGCATGCTGCTTCGTTGGGCTGTTGGGGAATACATGATCG
GAAGCTGTTGCTCCGAAATGCGATACGCTCTTTTTTGGTGGAAAGTGTCC
AAGGACAAGGAAAGACAACAGGCAGAAATCGCTTGCTGCGTTTGATTCGC
AAATCATGGGAGCAGGAATTGGGGAAGCATGGGGTAGTGCTAGAGAAGGA
AGCTTTTGACGTCGAGTGGGCAGTCCTGGCAAAGCAAGCAGAGAATGGAA
TGATGGTGGATGGCCTGGCAGCCACGACAGGAAGCAACAACGACAAATAT
CTTCAACAGTTTCAAACACCTCAATCGCCGCAGTTCCCCCAGAGGCAACA
GCTGCAGCAGCCAGAGAAGAAGGGTGGGACTAGCAACGATAGCTTCGCCT
ACCTGGAAGCCGCCCACATCTATATTCTCGCTCACGTCCTCCGTCGGCCC
CTCATTGTCTTTGCAACTGACTGGACGGATGCCAAGGGCCGACAACTCGC
TTCCGCCGAGGAGATTGCAGGTGTCTATCTTCCTTTAGAACTGCCACGAT
ACGTCTGCTCTCGCACGCCCTTGCTCTTGGCCTATGATTCGTTTCATTTT
TCTCCCTTGGTGCCTGTGGACCCTTCGCGGCTCTCCCAGGTACCGTTGGT
AATAAGCGGTACACAGCGCGATCAGCTGTTGCCGCTACCTTTTTATGCGC
CGAGTGAACGGAACATCCCTTTGCGGGCGGCAATGCTGAAGCATTACTTA
GACTGTGATGTGTTGGCTGAGGGGTTGTTGGTTGTGAAGATTGATGATAG
TAACTCCACAATGACGCGAACGGCGCATGCTACTTCGCCATTTTCTGCCT
CCTCATTTCCCGCGGATGGGCTGATGTCTTTATTGCTAAGTAACGTGGTT
GAGGACGAGGAGTTTCAGCAGAACAAGACCATCCTTCCTCACGGGCGGGG
CTTGTCTCGTTGTGCGAGTGCTCACAAAATAGCGACGCGTGCCTCCTCTC
CTACAGAAAGCCAGTTTTCATCCTCACTCTCGTCTTTTCCTCCCTTGCCA
TTGAATCAGCGGATGCGTGGTGGTGGTGGCTTAGTAGTTGGCACGGCGCT
CCACTCTCTGTCGTTGGGTTCGTTTGCATCGTCGTCCCGAACTGGGAGTA
GCAGTAGCTTGAATGCTCCTCCTCCTCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
ACAACAACAACAACCACAACAACCACAACAACCACAACAACCACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAGCAACAACAGCAACAACAACAACA
ACAACAACAACAACAACGACAAGAAGAAGAAGAACATCAGCAGCAGCAAT
GGCATCAACGGCAGCAGCAGCGAAAGCTGCGAGAGCAGGAAGAGCATGAA
GAACAAAAAAAGCAGCGGGGGGGCACGTTGCCTTCCTGCTCGGCTTTGGG
AAGCAGCACAAGCATTGCCGAGAAGAACCGCATCAAGAAGAACAGCATCA
GAAAACCCACAACCACTACCCACAGCAATAGCATTAGTGGCAGAAGCAAC
AGCAGTTGTAGTTGCAGCAGCAGCTTCACCAAGCGAGAACAGTATATCAT
CCGACAACTGCGGGAGCACAAAGACTTAGTCTTGGCACTGGAAGAGGTTT
TGAAGAGAAGTGAGAGAGCAAAGCGTCAGCAGCAGCAGCAGCCACAGCAG
CAAACTTCAACGGCACCGTGGCCTGCAATGACACCTACTACCCCTACCAC
CGTTCCTGTGGCGGGGCCACCTGTACTCCTTTTAGCACCAGCAGCACCAT
TAGATGCAAAGATGGAAGCTCCCGCAATCACCCCGCCTTTGAGGCACAAC
TGGCTCGCGGCGCTACGTTTTACTTAATCAAATGGCAACCTTGGTTCCAT
GCAAATAAAGAGTTCATTATTTCCTTCACAGTGAAATATACAAAGCCACA
CTATACATGATGAAAAGCATCGAGGACGCGAGGGATACGAAAGAAAATGA
AAGGAAAGAGAAAATAGAAAAAAACCGAAAAGAGTACGACAAGCACTGTC
GCTGCAGTATTGCATCATTAGGATGACAATGAGGGCAATTAAAACATATT
ATAGCACAAGTAAGAATTTTGCAGCATGAATGGACATGTGTAGCAGACAA
TCAAAAGACCGCAAGATAGGCAAATGGGCACCCTATTAGCCTAACTTTGT
AAAAAAGTAGAGTAAACTTCAAGGCATCTACACGGGGTTGGAAACGTCAA
AGAATGAAATAAAGACTATCCATGAA back to topCoding sequence (CDS) from alignment at scaffold_10:132442..135817- >mRNA_4261 ID=mRNA_4261|Name=jgi.p|Nanoce1779_2|630148|organism=Nannochloropsis oceanica|type=CDS|length=3717bp|location=Sequence derived from alignment at scaffold_10:132442..135817- (Nannochloropsis oceanica)
CACCAGCAGCACCATTAGATGCAAAGATGGAAGCTCCCGCAATCACCCCG
CCTTTGAGGCACAACTGGCTCGCGGCGCTACGTTTTACTTAAAGGGTCTA
TCCCAGACGAGCCGGAGGACCTTGTTGCAGAGCTTGCTAGATCCTTGTCC
CACGCGGAACTTGGAGAAGGCGGGCAAGATTAATTGGCACCCGGAATGTG
CGTCGTTGGTGGCGCTGCGGACGGAAAGTGATGGGAATTGTCTGGCGCAT
GCTGCTTCGTTGGGCTGTTGGGGAATACATGATCGGAAGCTGTTGCTCCG
AAATGCGATACGCTCTTTTTTGGTGGAAAGTGTCCAAGGACAAGGAAAGA
CAACAGGCAGAAATCGCTTGCTGCGTTTGATTCGCAAATCATGGGAGCAG
GAATTGGGGAAGCATGGGGTAGTGCTAGAGAAGGAAGCTTTTGACGTCGA
GTGGGCAGTCCTGGCAAAGCAAGCAGAGAATGGAATGATGGTGGATGGCC
TGGCAGCCACGACAGGAAGCAACAACGACAAATATCTTCAACAGTTTCAA
ACACCTCAATCGCCGCAGTTCCCCCAGAGGCAACAGCTGCAGCAGCCAGA
GAAGAAGGGTGGGACTAGCAACGATAGCTTCGCCTACCTGGAAGCCGCCC
ACATCTATATTCTCGCTCACGTCCTCCGTCGGCCCCTCATTGTCTTTGCA
ACTGACTGGACGGATGCCAAGGGCCGACAACTCGCTTCCGCCGAGGAGAT
TGCAGGTGTCTATCTTCCTTTAGAACTGCCACGATACGTCTGCTCTCGCA
CGCCCTTGCTCTTGGCCTATGATTCGTTTCATTTTTCTCCCTTGGTGCCT
GTGGACCCTTCGCGGCTCTCCCAGGTACCGTTGGTAATAAGCGGTACACA
GCGCGATCAGCTGTTGCCGCTACCTTTTTATGCGCCGAGTGAACGGAACA
TCCCTTTGCGGGCGGCAATGCTGAAGCATTACTTAGACTGTGATGTGTTG
GCTGAGGGGTTGTTGGTTGTGAAGATTGATGATAGTAACTCCACAATGAC
GCGAACGGCGCATGCTACTTCGCCATTTTCTGCCTCCTCATTTCCCGCGG
ATGGGCTGATGTCTTTATTGCTAAGTAACGTGGTTGAGGACGAGGAGTTT
CAGCAGAACAAGACCATCCTTCCTCACGGGCGGGGCTTGTCTCGTTATGG
GGCGGATTTCCAATGCAGCGACATCGTACTTGGGTGTCGCACCAGCAGCA
CCATTAGATGCAAAGATGGAAGCTCCCGCAATCACCCCGCCTTTGAGGCA
CAACTGGCTCGCGGCGCTACGTTTTACTTAAAGGGTCTATCCCAGACGAG
CCGGAGGACCTTGTTGCAGAGCTTGCTAGATCCTTGTCCCACGCGGAACT
TGGAGAAGGCGGGCAAGATTAATTGGCACCCGGAATGTGCGTCGTTGGTG
GCGCTGCGGACGGAAAGTGATGGGAATTGTCTGGCGCATGCTGCTTCGTT
GGGCTGTTGGGGAATACATGATCGGAAGCTGTTGCTCCGAAATGCGATAC
GCTCTTTTTTGGTGGAAAGTGTCCAAGGACAAGGAAAGACAACAGGCAGA
AATCGCTTGCTGCGTTTGATTCGCAAATCATGGGAGCAGGAATTGGGGAA
GCATGGGGTAGTGCTAGAGAAGGAAGCTTTTGACGTCGAGTGGGCAGTCC
TGGCAAAGCAAGCAGAGAATGGAATGATGGTGGATGGCCTGGCAGCCACG
ACAGGAAGCAACAACGACAAATATCTTCAACAGTTTCAAACACCTCAATC
GCCGCAGTTCCCCCAGAGGCAACAGCTGCAGCAGCCAGAGAAGAAGGGTG
GGACTAGCAACGATAGCTTCGCCTACCTGGAAGCCGCCCACATCTATATT
CTCGCTCACGTCCTCCGTCGGCCCCTCATTGTCTTTGCAACTGACTGGAC
GGATGCCAAGGGCCGACAACTCGCTTCCGCCGAGGAGATTGCAGGTGTCT
ATCTTCCTTTAGAACTGCCACGATACGTCTGCTCTCGCACGCCCTTGCTC
TTGGCCTATGATTCGTTTCATTTTTCTCCCTTGGTGCCTGTGGACCCTTC
GCGGCTCTCCCAGGTACCGTTGGTAATAAGCGGTACACAGCGCGATCAGC
TGTTGCCGCTACCTTTTTATGCGCCGAGTGAACGGAACATCCCTTTGCGG
GCGGCAATGCTGAAGCATTACTTAGACTGTGATGTGTTGGCTGAGGGGTT
GTTGGTTGTGAAGATTGATGATAGTAACTCCACAATGACGCGAACGGCGC
ATGCTACTTCGCCATTTTCTGCCTCCTCATTTCCCGCGGATGGGCTGATG
TCTTTATTGCTAAGTAACGTGGTTGAGGACGAGGAGTTTCAGCAGAACAA
GACCATCCTTCCTCACGGGCGGGGCTTGTCTCGTTATGGGGCGGATTTCC
AATGCAGCGACATCGTACTTGGGTGTCGCACCAGCAGCACCATTAGATGC
AAAGATGGAAGCTCCCGCAATCACCCCGCCTTTGAGGCACAACTGGCTCG
CGGCGCTACGTTTTACTTAAAGGGTCTATCCCAGACGAGCCGGAGGACCT
TGTTGCAGAGCTTGCTAGATCCTTGTCCCACGCGGAACTTGGAGAAGGCG
GGCAAGATTAATTGGCACCCGGAATGTGCGTCGTTGGTGGCGCTGCGGAC
GGAAAGTGATGGGAATTGTCTGGCGCATGCTGCTTCGTTGGGCTGTTGGG
GAATACATGATCGGAAGCTGTTGCTCCGAAATGCGATACGCTCTTTTTTG
GTGGAAAGTGTCCAAGGACAAGGAAAGACAACAGGCAGAAATCGCTTGCT
GCGTTTGATTCGCAAATCATGGGAGCAGGAATTGGGGAAGCATGGGGTAG
TGCTAGAGAAGGAAGCTTTTGACGTCGAGTGGGCAGTCCTGGCAAAGCAA
GCAGAGAATGGAATGATGGTGGATGGCCTGGCAGCCACGACAGGAAGCAA
CAACGACAAATATCTTCAACAGTTTCAAACACCTCAATCGCCGCAGTTCC
CCCAGAGGCAACAGCTGCAGCAGCCAGAGAAGAAGGGTGGGACTAGCAAC
GATAGCTTCGCCTACCTGGAAGCCGCCCACATCTATATTCTCGCTCACGT
CCTCCGTCGGCCCCTCATTGTCTTTGCAACTGACTGGACGGATGCCAAGG
GCCGACAACTCGCTTCCGCCGAGGAGATTGCAGGTGTCTATCTTCCTTTA
GAACTGCCACGATACGTCTGCTCTCGCACGCCCTTGCTCTTGGCCTATGA
TTCGTTTCATTTTTCTCCCTTGGTGCCTGTGGACCCTTCGCGGCTCTCCC
AGGTACCGTTGGTAATAAGCGGTACACAGCGCGATCAGCTGTTGCCGCTA
CCTTTTTATGCGCCGAGTGAACGGAACATCCCTTTGCGGGCGGCAATGCT
GAAGCATTACTTAGACTGTGATGTGTTGGCTGAGGGGTTGTTGGTTGTGA
AGATTGATGATAGTAACTCCACAATGACGCGAACGGCGCATGCTACTTCG
CCATTTTCTGCCTCCTCATTTCCCGCGGATGGGCTGATGTCTTTATTGCT
AAGTAACGTGGTTGAGGACGAGGAGTTTCAGCAGAACAAGACCATCCTTC
CTCACGGGCGGGGCTTGTCTCGTTATGGGGCGGATTTCCAATGCAGCGAC
ATCGTACTTGGGTGTCG back to top
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