jgi.p|Nanoce1779_2|588530, mRNA_4260 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588530
Unique NamemRNA_4260
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1615
Alignment locationscaffold_10:130657..132441 +

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Properties
Property NameValue
TranscriptId588616
TrackFilteredModels2
ProteinId588530
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:130657..132441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588530gene_4260Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588530mRNA_4260-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4260CDS_4260Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4260 ID=mRNA_4260|Name=jgi.p|Nanoce1779_2|588530|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
GCTATGATTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCC
CGGGATTTTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGG
GAAGATTATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGG
CAGCGATTGTGGCGACGTTGAAACCATTTCTATAGCAGCTGAATGTGGTG
ATGATAGATTGAGTGATTAAGGTGGTGGACAAGAGAGGGAGAAGTGACGG
GGGCGGTGGCGATGGAGTTGCTCTTGTAGCCGCAGCAGCAGCAACAGCAG
CAGAGGCCTAGAAGCTACCTTGATGTGTTTAATGACTGATAGAATAGAGC
AGTTAAAACAGAAAGTATTTTTCCTACCAAAGCAATTAAATGGAGAGGTG
CACACATGCATGTATTATTTTTCGTTTCAAAATCCAGTCTGTACCTTACG
TTCTTACTAAACCATACATCCCTTCCCTCCACCTTCTCCCACACACAGAA
ACATTTATTGAAGGCGCTTCATGGCCAGCCCTCCTCCCTCCCCTTTGGAG
AGTGATGATGATCTGCCTATCTGCTGTACTTGTGGAAATGCCTACGGACC
TTCCCCAAATCCTCCTTCGACGTGCAAGATTTGCAAAGACGACAGGCAAT
GGCTGTCAGCAACAGGGCCCCAATGGACGAGTCTCCGCGCCCTAGCGGGG
GGGGGGCACAAAAATGAGATTGCCCGGGTAGAAACCAATGTGTACAGCAT
CGTTACTACCCCAAAGATAGGAATAGGACAGCGGTGTCTGTTGGTGCAGT
ATCCCGGACGTGGAGAAATAAATAATGGGGAAGGAGAGAATGTATTGTGG
GATTGTTGTGCTTTCCTGGACCAGTCCACCATTGAGGCCGTGAACGCATT
GGGTGGGATTTCGAAGATTATTTTGTCACACCCACATTTTCTGGGCTCGT
GCATTACGTGGAGCAAGGCTTTTGGAGATGTGCCTATCTTCCTGCATAAG
AGCGACAAAGAGTGGATCACCCGGCCTGTTGAGGGCAAAACGTCGCCTTA
TTTTCTATGGGAGGGAGAGGAGACTTTGAGTTCTTTATGCCCAACCCTTA
AGCTCGTGCGCCTGGGCGGTCATTTTCCTTCCTCATCTGTGTTGCTCCTT
GAGTCGTCGGCGGAAGACGGGAAGGGTGTCGTGTTCGCAGGCGATACTAT
TCTGCCTGTACCCCATGGTCGTTGGTGCTCGTTCATGTATAGCTTTCCCA
ATCTTTTGCCTTTGCCTGCTTTTATCGTAGAGGATATCAAGGCAAAGGTG
GAGAAGTTGCCTGATTTTGATAGGCTGTACGGCCCTTTTTCAACCTCGTC
TATATTGGGAAATGCAAAGGAGGCGGTGTTAGAAAGTGCGCAGCGGTATC
TGGATTCCTTGGCGGGAAAGTATCACGGCAAGTAAATGGAAGAGAAATGA
GAGAGAAAGACAAATATAACGACGAAAGAAGGAAAAGAAAGTTTAAGGTG
TGGGATGGAAAGGGGATGAGTGGCCAACGAATAGAAGTGTGAGGAATTTG
GGAGAGCAACTTGCAACTTTTTGCCGGGTACAAGGCACAAATGAAACAAG
AGAGTTGTTTGAGCA
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protein sequence of jgi.p|Nanoce1779_2|588530

>mRNA_4260-protein ID=mRNA_4260-protein|Name=jgi.p|Nanoce1779_2|588530|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MASPPPSPLESDDDLPICCTCGNAYGPSPNPPSTCKICKDDRQWLSATGP
QWTSLRALAGGGHKNEIARVETNVYSIVTTPKIGIGQRCLLVQYPGRGEI
NNGEGENVLWDCCAFLDQSTIEAVNALGGISKIILSHPHFLGSCITWSKA
FGDVPIFLHKSDKEWITRPVEGKTSPYFLWEGEETLSSLCPTLKLVRLGG
HFPSSSVLLLESSAEDGKGVVFAGDTILPVPHGRWCSFMYSFPNLLPLPA
FIVEDIKAKVEKLPDFDRLYGPFSTSSILGNAKEAVLESAQRYLDSLAGK
YHGK*
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mRNA from alignment at scaffold_10:130657..132441+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4260 ID=mRNA_4260|Name=jgi.p|Nanoce1779_2|588530|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp|location=Sequence derived from alignment at scaffold_10:130657..132441+ (Nannochloropsis oceanica)
GCTATGATTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCC
CGGGATTTTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGG
GAAGATTATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGG
CAGCGATTGTGGCGACGTTGAAACCATTTCTATAGCAGCTGAATGTGGTG
ATGATAGATTGAGTGATTAAGGTGGTGGACAAGAGAGGGAGAAGTGACGG
GGGCGGTGGCGATGGAGTTGCTCTTGTAGCCGCAGCAGCAGCAACAGCAG
CAGAGGCCTAGAAGCTACCTTGATGTGTTTAATGACTGATAGAATAGAGC
AGTTAAAACAGAAAGTATTTTTCCTACCAAAGCAATTAAATGGAGAGGTG
CACACATGCATGTATTATTTTTCGTTTCAAAATCCAGTCTGTACCTTACG
TTCTTACTAAACCATACATCCCTTCCCTCCACCTTCTCCCACACACAGAA
ACATTTATTGAAGGCGCTTCATGGCCAGCCCTCCTCCCTCCCCTTTGGAG
AGTGATGATGATCTGCCTATCTGCTGTACTTGTGGAAATGCCTACGGACC
TTCCCCAAATCCTCCTTCGACGTGCAAGATTTGCAAAGACGACAGGTATG
TATTTTCTGGGTATCCTTTGCATCTGTCTCTTCAGTACATTAAGCAAGCT
ATGATGGGCAGTCATGGGTCTTATCCCATCAACAAAATTTTGTGGCATAG
ATCTGTCTTCTATGCTTTTTCCTCCTTGTCATACAGTCACCCATACTTTC
CCGAAAACATCATAGGCAATGGCTGTCAGCAACAGGGCCCCAATGGACGA
GTCTCCGCGCCCTAGCGGGGGGGGGGCACAAAAATGAGATTGCCCGGGTA
GAAACCAATGTGTACAGCATCGTTACTACCCCAAAGATAGGAATAGGACA
GCGGTGTCTGTTGGTGCAGTATCCCGGACGTGGAGAAATAAATAATGGGG
AAGGAGAGAATGTATTGTGGGATTGTTGTGCTTTCCTGGACCAGTCCACC
ATTGAGGCCGTGAACGCATTGGGTGGGATTTCGAAGATTATTTTGTCACA
CCCACATTTTCTGGGCTCGTGCATTACGTGGAGCAAGGCTTTTGGAGATG
TGCCTATCTTCCTGCATAAGAGCGACAAAGAGTGGATCACCCGGCCTGTT
GAGGGCAAAACGTCGCCTTATTTTCTATGGGAGGGAGAGGAGACTTTGAG
TTCTTTATGCCCAACCCTTAAGCTCGTGCGCCTGGGCGGTCATTTTCCTT
CCTCATCTGTGTTGCTCCTTGAGTCGTCGGCGGAAGACGGGAAGGGTGTC
GTGTTCGCAGGCGATACTATTCTGCCTGTACCCCATGGTCGTTGGTGCTC
GTTCATGTATAGCTTTCCCAATCTTTTGCCTTTGCCTGCTTTTATCGTAG
AGGATATCAAGGCAAAGGTGGAGAAGTTGCCTGATTTTGATAGGCTGTAC
GGCCCTTTTTCAACCTCGTCTATATTGGGAAATGCAAAGGAGGCGGTGTT
AGAAAGTGCGCAGCGGTATCTGGATTCCTTGGCGGGAAAGTATCACGGCA
AGTAAATGGAAGAGAAATGAGAGAGAAAGACAAATATAACGACGAAAGAA
GGAAAAGAAAGTTTAAGGTGTGGGATGGAAAGGGGATGAGTGGCCAACGA
ATAGAAGTGTGAGGAATTTGGGAGAGCAACTTGCAACTTTTTGCCGGGTA
CAAGGCACAAATGAAACAAGAGAGTTGTTTGAGCA
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Coding sequence (CDS) from alignment at scaffold_10:130657..132441+

>mRNA_4260 ID=mRNA_4260|Name=jgi.p|Nanoce1779_2|588530|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_10:130657..132441+ (Nannochloropsis oceanica)
ATGGCCAGCCCTCCTCCCTCCCCTTTGGAGAGTGATGATGATCTGCCTAT
CTGCTGTACTTGTGGAAATGCCTACGGACCTTCCCCAAATCCTCCTTCGA
CGTGCAAGATTTGCAAAGACGACAGGCAATGGCTGTCAGCAACAGGGCCC
CAATGGACGAGTCTCCGCGCCCTAGCGGGGGGGGGGCACAAAAATGAGAT
TGCCCGGGTAGAAACCAATGTGTACAGCATCGTTACTACCCCAAAGATAG
GAATAGGACAGCGGTGTCTGTTGGTGCAGTATCCCGGACGTGGAGAAATA
AATAATGGGGAAGGAGAGAATGTATTGTGGGATTGTTGTGCTTTCCTGGA
CCAGTCCACCATTGAGGCCGTGAACGCATTGGGTGGGATTTCGAAGATTA
TTTTGTCACACCCACATTTTCTGGGCTCGTGCATTACGTGGAGCAAGGCT
TTTGGAGATGTGCCTATCTTCCTGCATAAGAGCGACAAAGAGTGGATCAC
CCGGCCTGTTGAGGGCAAAACGTCGCCTTATTTTCTATGGGAGGGAGAGG
AGACTTTGAGTTCTTTATGCCCAACCCTTAAGCTCGTGCGCCTGGGCGGT
CATTTTCCTTCCTCATCTGTGTTGCTCCTTGAGTCGTCGGCGGAAGACGG
GAAGGGTGTCGTGTTCGCAGGCGATACTATTCTGCCTGTACCCCATGGTC
GTTGGTGCTCGTTCATGTATAGCTTTCCCAATCTTTTGCCTTTGCCTGCT
TTTATCGTAGAGGATATCAAGGCAAAGGTGGAGAAGTTGCCTGATTTTGA
TAGGCTGTACGGCCCTTTTTCAACCTCGTCTATATTGGGAAATGCAAAGG
AGGCGGTGTTAGAAAGTGCGCAGCGGTATCTGGATTCCTTGGCGGGAAAG
TATCACGGCAAGTAAATGGCCAGCCCTCCTCCCTCCCCTTTGGAGAGTGA
TGATGATCTGCCTATCTGCTGTACTTGTGGAAATGCCTACGGACCTTCCC
CAAATCCTCCTTCGACGTGCAAGATTTGCAAAGACGACAGGCAATGGCTG
TCAGCAACAGGGCCCCAATGGACGAGTCTCCGCGCCCTAGCGGGGGGGGG
GCACAAAAATGAGATTGCCCGGGTAGAAACCAATGTGTACAGCATCGTTA
CTACCCCAAAGATAGGAATAGGACAGCGGTGTCTGTTGGTGCAGTATCCC
GGACGTGGAGAAATAAATAATGGGGAAGGAGAGAATGTATTGTGGGATTG
TTGTGCTTTCCTGGACCAGTCCACCATTGAGGCCGTGAACGCATTGGGTG
GGATTTCGAAGATTATTTTGTCACACCCACATTTTCTGGGCTCGTGCATT
ACGTGGAGCAAGGCTTTTGGAGATGTGCCTATCTTCCTGCATAAGAGCGA
CAAAGAGTGGATCACCCGGCCTGTTGAGGGCAAAACGTCGCCTTATTTTC
TATGGGAGGGAGAGGAGACTTTGAGTTCTTTATGCCCAACCCTTAAGCTC
GTGCGCCTGGGCGGTCATTTTCCTTCCTCATCTGTGTTGCTCCTTGAGTC
GTCGGCGGAAGACGGGAAGGGTGTCGTGTTCGCAGGCGATACTATTCTGC
CTGTACCCCATGGTCGTTGGTGCTCGTTCATGTATAGCTTTCCCAATCTT
TTGCCTTTGCCTGCTTTTATCGTAGAGGATATCAAGGCAAAGGTGGAGAA
GTTGCCTGATTTTGATAGGCTGTACGGCCCTTTTTCAACCTCGTCTATAT
TGGGAAATGCAAAGGAGGCGGTGTTAGAAAGTGCGCAGCGGTATCTGGAT
TCCTTGGCGGGAAAGTATCACGGCAAGTAA
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Synonyms
Publications