jgi.p|Nanoce1779_2|565700, mRNA_4259 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565700
Unique NamemRNA_4259
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_10:129714..130841 +

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Properties
Property NameValue
TranscriptId565786
TrackFilteredModels2
ProteinId565700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:129714..130841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565700gene_4259Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565700mRNA_4259-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4259CDS_4259Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4259 ID=mRNA_4259|Name=jgi.p|Nanoce1779_2|565700|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
ATGCATATAATCAGGGCAAGACCAAGATCGCTATTATCTAGCTTGCTCGT
TTCCCTATTTATCGTCACGTTTCCAGTCTGCGCTTTTCTTCCCGTCTATC
CCATCCCTGCCCACAACTCTCGCCTCATTCCCATCCACGCCACCGTCGCC
GGCACGGGCGTCAATGTCCTCTACTCTGAGCGCTTTCTAGAACACAAAGC
ACGAGGCTACCATCCGGAAAATCCTTTACGGGTTTCGGTCCCAGCGCAAG
TCCTTAAGCACACTCCAGGGATTCATCTAAAGGCGCCCACCACGACTCAA
GAGGCGGCGTTGGCCGCAGTCCTGCGAGTCCACGACCCGGCTTACGTGGA
GGAAATCAGATCCTTATCCACGCGAGGTGGAGGAAATATCGATGCAGATA
CGTTTGTCAATGGTGCGACATATGAGGTGTGTTTGTTGGCAGCGACTGCT
TGGATGGATTGCGCCAGACAGACCTTGTTTGGGGACGAGGAAGAGGAGGA
GGAGGCAGGGTCGCTTGCGGCTACGCCCGTCCGGGTTCCCATCCGACGAC
CTTCTTTTGCCTTGACTCGGCCACCGGGTCATCATGCAGGACGCTCACAG
GCAATGGGCTTCTGCATCTTCAACTTTGCTGTGATTGCCGCCCGGTATGC
ATTCGACAAGTTGGGTTGCCAACGAGTGGCGATTTTGGATTTGGACGCTC
ACCACGGGAATGGGAATGAGGAGGCGGTCCGTACAGAACCTTCCATGTGC
TATGCATCATTCCACCAGCAAGATTCATTTCCGATGACGGGCCAAGATCC
GAGCGATCACGGGCCTCACGGGAATCTGCTCAATGTCCCTATCCGTGCCT
ACACCGAAATTACATCTTACCTGCCCCTGCTGGACGAGAAGGTCCTTCCC
TTCTTAACGGCGTTCGGGCCTGACCTTGTTATTGTCTCGGCGGGCTATGA
TTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCCCGGGATT
TTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGGGAAGATT
ATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGGCAGCGAT
TGTGGCGACGTTGAAACCATTTCTATAG
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protein sequence of jgi.p|Nanoce1779_2|565700

>mRNA_4259-protein ID=mRNA_4259-protein|Name=jgi.p|Nanoce1779_2|565700|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MHIIRARPRSLLSSLLVSLFIVTFPVCAFLPVYPIPAHNSRLIPIHATVA
GTGVNVLYSERFLEHKARGYHPENPLRVSVPAQVLKHTPGIHLKAPTTTQ
EAALAAVLRVHDPAYVEEIRSLSTRGGGNIDADTFVNGATYEVCLLAATA
WMDCARQTLFGDEEEEEEAGSLAATPVRVPIRRPSFALTRPPGHHAGRSQ
AMGFCIFNFAVIAARYAFDKLGCQRVAILDLDAHHGNGNEEAVRTEPSMC
YASFHQQDSFPMTGQDPSDHGPHGNLLNVPIRAYTEITSYLPLLDEKVLP
FLTAFGPDLVIVSAGYDCLVDDPLAQLALGPRDFEAVGERLLRAFGRGKI
MFGLEGGYEPENVAAAIVATLKPFL*
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mRNA from alignment at scaffold_10:129714..130841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4259 ID=mRNA_4259|Name=jgi.p|Nanoce1779_2|565700|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp|location=Sequence derived from alignment at scaffold_10:129714..130841+ (Nannochloropsis oceanica)
ATGCATATAATCAGGGCAAGACCAAGATCGCTATTATCTAGCTTGCTCGT
TTCCCTATTTATCGTCACGTTTCCAGTCTGCGCTTTTCTTCCCGTCTATC
CCATCCCTGCCCACAACTCTCGCCTCATTCCCATCCACGCCACCGTCGCC
GGCACGGGCGTCAATGTCCTCTACTCTGAGCGCTTTCTAGAACACAAAGC
ACGAGGCTACCATCCGGAAAATCCTTTACGGGTTTCGGTCCCAGCGCAAG
TCCTTAAGCACACTCCAGGGATTCATCTAAAGGCGCCCACCACGACTCAA
GAGGCGGCGTTGGCCGCAGTCCTGCGAGTCCACGACCCGGCTTACGTGGA
GGAAATCAGATCCTTATCCACGCGAGGTGGAGGAAATATCGATGCAGATA
CGTTTGTCAATGGTGCGACATATGAGGTGTGTTTGTTGGCAGCGACTGCT
TGGATGGATTGCGCCAGACAGACCTTGTTTGGGGACGAGGAAGAGGAGGA
GGAGGCAGGGTCGCTTGCGGCTACGCCCGTCCGGGTTCCCATCCGACGAC
CTTCTTTTGCCTTGACTCGGCCACCGGGTCATCATGCAGGACGCTCACAG
GCAATGGGCTTCTGCATCTTCAACTTTGCTGTGATTGCCGCCCGGTATGC
ATTCGACAAGTTGGGTTGCCAACGAGTGGCGATTTTGGATTTGGACGCTC
ACCACGGGAATGGGAATGAGGAGGCGGTCCGTACAGAACCTTCCATGTGC
TATGCATCATTCCACCAGCAAGATTCATTTCCGATGACGGGCCAAGATCC
GAGCGATCACGGGCCTCACGGGAATCTGCTCAATGTCCCTATCCGTGCCT
ACACCGAAATTACATCTTACCTGCCCCTGCTGGACGAGAAGGTCCTTCCC
TTCTTAACGGCGTTCGGGCCTGACCTTGTTATTGTCTCGGCGGGCTATGA
TTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCCCGGGATT
TTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGGGAAGATT
ATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGGCAGCGAT
TGTGGCGACGTTGAAACCATTTCTATAG
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Coding sequence (CDS) from alignment at scaffold_10:129714..130841+

>mRNA_4259 ID=mRNA_4259|Name=jgi.p|Nanoce1779_2|565700|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_10:129714..130841+ (Nannochloropsis oceanica)
ATGCATATAATCAGGGCAAGACCAAGATCGCTATTATCTAGCTTGCTCGT
TTCCCTATTTATCGTCACGTTTCCAGTCTGCGCTTTTCTTCCCGTCTATC
CCATCCCTGCCCACAACTCTCGCCTCATTCCCATCCACGCCACCGTCGCC
GGCACGGGCGTCAATGTCCTCTACTCTGAGCGCTTTCTAGAACACAAAGC
ACGAGGCTACCATCCGGAAAATCCTTTACGGGTTTCGGTCCCAGCGCAAG
TCCTTAAGCACACTCCAGGGATTCATCTAAAGGCGCCCACCACGACTCAA
GAGGCGGCGTTGGCCGCAGTCCTGCGAGTCCACGACCCGGCTTACGTGGA
GGAAATCAGATCCTTATCCACGCGAGGTGGAGGAAATATCGATGCAGATA
CGTTTGTCAATGGTGCGACATATGAGGTGTGTTTGTTGGCAGCGACTGCT
TGGATGGATTGCGCCAGACAGACCTTGTTTGGGGACGAGGAAGAGGAGGA
GGAGGCAGGGTCGCTTGCGGCTACGCCCGTCCGGGTTCCCATCCGACGAC
CTTCTTTTGCCTTGACTCGGCCACCGGGTCATCATGCAGGACGCTCACAG
GCAATGGGCTTCTGCATCTTCAACTTTGCTGTGATTGCCGCCCGGTATGC
ATTCGACAAGTTGGGTTGCCAACGAGTGGCGATTTTGGATTTGGACGCTC
ACCACGGGAATGGGAATGAGGAGGCGGTCCGTACAGAACCTTCCATGTGC
TATGCATCATTCCACCAGCAAGATTCATTTCCGATGACGGGCCAAGATCC
GAGCGATCACGGGCCTCACGGGAATCTGCTCAATGTCCCTATCCGTGCCT
ACACCGAAATTACATCTTACCTGCCCCTGCTGGACGAGAAGGTCCTTCCC
TTCTTAACGGCGTTCGGGCCTGACCTTGTTATTGTCTCGGCGGGCTATGA
TTGTTTGGTGGACGATCCACTGGCACAGTTGGCCTTGGGTCCCCGGGATT
TTGAGGCGGTGGGGGAGAGGCTGTTGAGAGCGTTCGGAAGAGGGAAGATT
ATGTTTGGATTGGAAGGAGGATACGAGCCGGAGAATGTGGCGGCAGCGAT
TGTGGCGACGTTGAAACCATTTCTATAG
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Synonyms
Publications