jgi.p|Nanoce1779_2|528153, mRNA_4256 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528153
Unique NamemRNA_4256
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1275
Alignment locationscaffold_10:121716..123116 -

Link to JBrowse

Properties
Property NameValue
TranscriptId528239
TrackFilteredModels2
ProteinId528153
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:121716..123116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528153gene_4256Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528153mRNA_4256-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4256CDS_4256Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4256 ID=mRNA_4256|Name=jgi.p|Nanoce1779_2|528153|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
ATGGCGGAGTACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCA
TTTCTTGGTGCAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCG
CGTACTTCCAAATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAA
AAGACCAAGAACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGA
ATACCCTTCCCCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGG
AGGAGGTCCTGCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATC
GACGATATGACCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCC
CCCCGAGAGGTTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGT
ACTACGATTATGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCC
TCCATTTTTCTCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTT
CTCCACAGTCCGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTA
TCCTCACTCAACAATGGCACCTAGATGGCGTCCCCCCCACCAAACCAACC
GCCGCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAAAGCTTCA
ACTCCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCCGCCACTC
CCGAAGAGGCCCGAAAGCGGCCAGGGAATGGCCCGGATCGTTACAGGCAA
GCTTTGCAGAACAATGCACCTTGGCTGCTGCGGTACATGACTACTATGGT
TATTCTACACAAGCGCCCAGTGAGCGAGCGGTTCAGGCGCAAGCAGGATG
TCATCAAGGAGGTGATTTGGTTGATTGAACAAGAGGCGTACAACTACCAA
GATCCCATCACCCAATTCCTGCAGTGTTTGTATGTGCGCTTCGACTTCGA
CGGCGCACAAGAGAAGCTCCAAGCGTGTTACCACGTCCTAAGGAATGATT
ACTTCTTGTCGGGGTGGGCGGACGCGTTTTTGACGGAGGCCAGACAGTTG
ATCTTCGAGACTTATTGCCGCATCCACCAAAAAATTGATATCAACATGCT
GGGGCAGAAGCTGGGCATGTCCGCCGCCGAGGCCGAGAAGTGGATCGTGG
ACCTGATCTTGGACTCTAAGCTTGTAGCGAAGATTGATTCGAGGGATAAT
TACGTGGAGATGGACACGCATTCGCCGTCGGTGTATCAGCAGGTGAAGGA
TCAAGGGCGGGAAGTGAGGGAGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|528153

>mRNA_4256-protein ID=mRNA_4256-protein|Name=jgi.p|Nanoce1779_2|528153|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MAEYDLTHKIAPFADVHFLVQPDGPFDFLVGQAAYFQIPDVMRAKVALLQ
KTKNTDGEVRALEELEEYPSPELEARSKALDDEEEVLREAAGDALDMFSI
DDMTKIKEYVTAGATDPPERLECKEKLLAALPAYYDYAKFKYERGEYDDA
SIFLNNYIQAIGDRAAFSTVRYSNALWGRLGSAILTQQWHLDGVPPTKPT
AADPDPIRSMSDREKLQLRTWLLHWCLFAYPATPEEARKRPGNGPDRYRQ
ALQNNAPWLLRYMTTMVILHKRPVSERFRRKQDVIKEVIWLIEQEAYNYQ
DPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLTEARQL
IFETYCRIHQKIDINMLGQKLGMSAAEAEKWIVDLILDSKLVAKIDSRDN
YVEMDTHSPSVYQQVKDQGREVRE*
back to top

mRNA from alignment at scaffold_10:121716..123116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4256 ID=mRNA_4256|Name=jgi.p|Nanoce1779_2|528153|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp|location=Sequence derived from alignment at scaffold_10:121716..123116- (Nannochloropsis oceanica)
ATGGCGGAGTACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTGCA
TTTCTTGGTGCAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGCCG
CGTACTTCCAAATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGCAA
AAGACCAAGAACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAAGA
ATACCCTTCCCCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGAGG
AGGAGGTCCTGCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCATC
GACGATATGACCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGACCC
CCCCGAGAGGTTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGCGT
ACTACGATTATGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATGCC
TCCATTTTTCTCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCCTT
CTCCACAGTCCGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGCTA
TCCTCACTCAACAATGGCACCTAGTCAAGGAAGCTGTCGATGCGATCGAC
AAACACATCATGACAGTCAAGCGCCGCGAGGATGGCGTCCCCCCCACCAA
ACCAACCGCCGCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGAAA
AGCTTCAACTCCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATCCC
GCCACTCCCGAAGAGGCCCGAAAGCGTGAGGATGCAGGCGACAAGTGGGA
GAATATTTTGGAGCTGATCTTTCCGGCGAACGACGATAAGCAAGGGCCAG
GGAATGGCCCGGATCGTTACAGGCAAGCTTTGCAGAACAATGCACCTTGG
CTGCTGCGGTACATGACTACTATGGTTATTCTACACAAGCGCCCAGTGAG
CGAGCGGTTCAGGCGCAAGCAGGATGTCATCAAGGAGGTGATTTGGTTGA
TTGAACAAGAGGCGTACAACTACCAAGATCCCATCACCCAATTCCTGCAG
TGTTTGTATGTGCGCTTCGACTTCGACGGCGCACAAGAGAAGCTCCAAGC
GTGTTACCACGTCCTAAGGAATGATTACTTCTTGTCGGGGTGGGCGGACG
CGTTTTTGACGGAGGCCAGACAGTTGATCTTCGAGACTTATTGCCGCATC
CACCAAAAAATTGATATCAACATGCTGGGGCAGAAGCTGGGCATGTCCGC
CGCCGAGGCCGAGAAGTGGATCGTGGACCTGATCTTGGACTCTAAGCTTG
TAGCGAAGATTGATTCGAGGGATAATTACGTGGAGATGGACACGCATTCG
CCGTCGGTGTATCAGCAGGTGAAGGATCAAGGGCGGGAAGTGAGGGAGTG
A
back to top

Coding sequence (CDS) from alignment at scaffold_10:121716..123116-

>mRNA_4256 ID=mRNA_4256|Name=jgi.p|Nanoce1779_2|528153|organism=Nannochloropsis oceanica|type=CDS|length=3825bp|location=Sequence derived from alignment at scaffold_10:121716..123116- (Nannochloropsis oceanica)
GGCCAGGGAATGGCCCGGATCGTTACAGGCAAGCTTTGCAGAACAATGCA
CCTTGGCTGCTGCGGTACATGACTACTATGGTTATTCTACACAAGCGCCC
AGTGAGCGAGCGGTTCAGGCGCAAGCAGGATGTCATCAAGGAGGTGATTT
GGTTGATTGAACAAGAGGCGTACAACTACCAAGATCCCATCACCCAATTC
CTGCAGTGTTTGTATGTGCGCTTCGACTTCGACGGCGCACAAGAGAAGCT
CCAAGCGTGTTACCACGTCCTAAGGAATGATTACTTCTTGTCGGGGTGGG
CGGACGCGTTTTTGACGGAGGCCAGACAGTTGATCTTCGAGACTTATTGC
CGCATCCACCAAAAAATTGATATCAACATGCTGGGGCAGAAGCTGGGCAT
GTCCGCCGCCGAGGCCGAGAAGTGGATCGTGGACCTGATCTTGGACTCTA
AGCTTGTAGCGAAGATTGATTCGAGGGATAATTACGTGGAGATGGACACG
CATTCGCCGTCGGTGTATCAGCAGGTGAAGGATCAAGGGCGGGAAGTGAG
GGAGTGAGATGGCGTCCCCCCCACCAAACCAACCGCCGCCGACCCCGACC
CTATTCGCTCCATGTCTGACCGTGAAAAGCTTCAACTCCGCACTTGGCTT
CTCCACTGGTGCCTCTTCGCCTATCCCGCCACTCCCGAAGAGGCCCGAAA
GCATGGCGGAGTACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTG
CATTTCTTGGTGCAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGC
CGCGTACTTCCAAATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGC
AAAAGACCAAGAACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAA
GAATACCCTTCCCCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGA
GGAGGAGGTCCTGCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCA
TCGACGATATGACCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGAC
CCCCCCGAGAGGTTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGC
GTACTACGATTATGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATG
CCTCCATTTTTCTCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCC
TTCTCCACAGTCCGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGC
TATCCTCACTCAACAATGGCACCTAGGCCAGGGAATGGCCCGGATCGTTA
CAGGCAAGCTTTGCAGAACAATGCACCTTGGCTGCTGCGGTACATGACTA
CTATGGTTATTCTACACAAGCGCCCAGTGAGCGAGCGGTTCAGGCGCAAG
CAGGATGTCATCAAGGAGGTGATTTGGTTGATTGAACAAGAGGCGTACAA
CTACCAAGATCCCATCACCCAATTCCTGCAGTGTTTGTATGTGCGCTTCG
ACTTCGACGGCGCACAAGAGAAGCTCCAAGCGTGTTACCACGTCCTAAGG
AATGATTACTTCTTGTCGGGGTGGGCGGACGCGTTTTTGACGGAGGCCAG
ACAGTTGATCTTCGAGACTTATTGCCGCATCCACCAAAAAATTGATATCA
ACATGCTGGGGCAGAAGCTGGGCATGTCCGCCGCCGAGGCCGAGAAGTGG
ATCGTGGACCTGATCTTGGACTCTAAGCTTGTAGCGAAGATTGATTCGAG
GGATAATTACGTGGAGATGGACACGCATTCGCCGTCGGTGTATCAGCAGG
TGAAGGATCAAGGGCGGGAAGTGAGGGAGTGAGATGGCGTCCCCCCCACC
AAACCAACCGCCGCCGACCCCGACCCTATTCGCTCCATGTCTGACCGTGA
AAAGCTTCAACTCCGCACTTGGCTTCTCCACTGGTGCCTCTTCGCCTATC
CCGCCACTCCCGAAGAGGCCCGAAAGCATGGCGGAGTACGATCTCACGCA
CAAGATTGCACCCTTTGCGGACGTGCATTTCTTGGTGCAGCCCGACGGTC
CCTTTGACTTCTTGGTGGGGCAAGCCGCGTACTTCCAAATTCCAGACGTC
ATGCGGGCCAAGGTGGCCTTGCTGCAAAAGACCAAGAACACCGACGGCGA
AGTCCGTGCTCTGGAAGAACTGGAAGAATACCCTTCCCCCGAGTTGGAAG
CCCGGAGCAAGGCTTTGGATGACGAGGAGGAGGTCCTGCGCGAAGCGGCG
GGGGATGCCTTGGACATGTTTAGCATCGACGATATGACCAAAATCAAGGA
ATATGTCACGGCCGGGGCCACGGACCCCCCCGAGAGGTTGGAGTGCAAGG
AAAAGCTCCTGGCCGCCCTGCCGGCGTACTACGATTATGCTAAGTTTAAA
TACGAGCGAGGTGAATATGACGATGCCTCCATTTTTCTCAACAACTACAT
CCAAGCCATCGGGGACCGTGCTGCCTTCTCCACAGTCCGTTACTCCAATG
CCTTGTGGGGACGACTCGGCTCCGCTATCCTCACTCAACAATGGCACCTA
GGCCAGGGAATGGCCCGGATCGTTACAGGCAAGCTTTGCAGAACAATGCA
CCTTGGCTGCTGCGGTACATGACTACTATGGTTATTCTACACAAGCGCCC
AGTGAGCGAGCGGTTCAGGCGCAAGCAGGATGTCATCAAGGAGGTGATTT
GGTTGATTGAACAAGAGGCGTACAACTACCAAGATCCCATCACCCAATTC
CTGCAGTGTTTGTATGTGCGCTTCGACTTCGACGGCGCACAAGAGAAGCT
CCAAGCGTGTTACCACGTCCTAAGGAATGATTACTTCTTGTCGGGGTGGG
CGGACGCGTTTTTGACGGAGGCCAGACAGTTGATCTTCGAGACTTATTGC
CGCATCCACCAAAAAATTGATATCAACATGCTGGGGCAGAAGCTGGGCAT
GTCCGCCGCCGAGGCCGAGAAGTGGATCGTGGACCTGATCTTGGACTCTA
AGCTTGTAGCGAAGATTGATTCGAGGGATAATTACGTGGAGATGGACACG
CATTCGCCGTCGGTGTATCAGCAGGTGAAGGATCAAGGGCGGGAAGTGAG
GGAGTGAGATGGCGTCCCCCCCACCAAACCAACCGCCGCCGACCCCGACC
CTATTCGCTCCATGTCTGACCGTGAAAAGCTTCAACTCCGCACTTGGCTT
CTCCACTGGTGCCTCTTCGCCTATCCCGCCACTCCCGAAGAGGCCCGAAA
GCATGGCGGAGTACGATCTCACGCACAAGATTGCACCCTTTGCGGACGTG
CATTTCTTGGTGCAGCCCGACGGTCCCTTTGACTTCTTGGTGGGGCAAGC
CGCGTACTTCCAAATTCCAGACGTCATGCGGGCCAAGGTGGCCTTGCTGC
AAAAGACCAAGAACACCGACGGCGAAGTCCGTGCTCTGGAAGAACTGGAA
GAATACCCTTCCCCCGAGTTGGAAGCCCGGAGCAAGGCTTTGGATGACGA
GGAGGAGGTCCTGCGCGAAGCGGCGGGGGATGCCTTGGACATGTTTAGCA
TCGACGATATGACCAAAATCAAGGAATATGTCACGGCCGGGGCCACGGAC
CCCCCCGAGAGGTTGGAGTGCAAGGAAAAGCTCCTGGCCGCCCTGCCGGC
GTACTACGATTATGCTAAGTTTAAATACGAGCGAGGTGAATATGACGATG
CCTCCATTTTTCTCAACAACTACATCCAAGCCATCGGGGACCGTGCTGCC
TTCTCCACAGTCCGTTACTCCAATGCCTTGTGGGGACGACTCGGCTCCGC
TATCCTCACTCAACAATGGCACCTA
back to top
Synonyms
Publications