Properties
| Property Name | Value |
|---|
| TranscriptId | 565783 |
| Track | FilteredModels2 |
| ProteinId | 565697 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:116244..118307 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4254 ID=mRNA_4254|Name=jgi.p|Nanoce1779_2|565697|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
ATGGGGAAGGTGGAGGCCTATCGATGCCGACCGTTGGGAAGGGGAGAATA
CCAGCAGCAAGAGCAGACGACGACGATGACAGCAGCAGGGACGGTAGAGG
AATTTCTTGTGCGCTTGGCGGATGGCTGGCAAGGGGCAGTTACCAAGCGT
TTGGTCGAAGAGGGCATTGCGCGTTTTTTGGCTACTGTATCATCAGAAGA
GGCATGGGCGAGGGAGCAAGGGGGTGAAGTTATGGCTCGAAGTGCCAGTG
GAGGAGGAGGGAGCAGCAGCAGCGGCACCAGCCCCAAACGCAAAGAAAAA
TCGGGCTCTTCCTCACACCCCCGCCGCGCGTCCGGCAGTGGAGGCGGCGG
GGGTGCGGGCCTCGCCTCCGGTACATTGGAGCGGCTGGTCGTACCTTTAC
CTGAGGAGGCAGCAAATAAATCTTCGTTGACTCTCAGCGAGACGCGGCGG
GGTTTGGAGCTGGTGCGGCGGCTTGCGGCCCCTTATTTTGCTCGGGAGTT
TAGCCAGCCGATCAAGGAGCTGCATCCGGAGGTCTGGAAGGAGTACCAGA
AGGTAATCACGCACCCCATGGACTTGGGCACCATCACGTACAAACTCCGG
CAAGGCCGCTACCGGACCGTTTCACGCTTCTTCCGGGACATCGAGCTCGT
CTATGCCAACTGCGAGCGCTTCAACTTGGACACGCCCTCTCCTGCCGTTT
TGGCCTACGCGAACCATTTGAAGCACCACACCCGCTCCCTCTGGCTGGAA
CTCATGGTGGCGGAGGGCGAGGACGAGGACGAGAAGGAGGATGGGATGCC
CTCGGTGTGGGATAGGGAGGCAGTGGAAGAGAAGAGGCAAGAGCGACAGG
ATCGTTTGTTGTTTTGTCAAGACCTACCACTCAGTAAACACGACGTACGG
GAGCTGAGGGAAAAGTTGGCGAGGGTGCAGGAGCATGTGGAGAAGGAAGA
TGGTAGCTTGGGGATGCTTGAAAGTCTGGTCGGGTATGGGGCCTTGCTGG
CCGTGGGGGAAGGAGGGGGGGAGGGAGGGACGGAAGGAGGGCTGACTGTC
GGGAGGGCGTGGGAGGGGTTAGGACGCGCGTTTCAAGGAAAGGAGTGGGC
GGCGGGGGAGGGGAGGACGATGGAAAAAGTAGTGGACGCCTTCCATCTGG
TGACCGCGGGAGTAAAGGAGAGGCGGTTGAGAGGGACGGAGTTCTCGTCC
ATATGGGCCCAGCCGGTACGGCTTGTGTGGGCAGGGCAGAAGAAACCGGG
TGGGGCGCGGCATCAGGCGCAGGCGTATTGGCCTGGGATGGTGGTGATGT
ATGGGGACACGCCCGACTTTCTGACGCGATTGAACGAGAGCCGGCTGCCA
TTGGTGTATGCCAAGGTGTTGCGGAAGCAGCGGACGGGAAACAAGGCGGG
AATGAGCACGCACCAGGCCCCGAGAGCGACCCCAATACTCCCAACAACAA
GCACCTTAAAGGCAAAGAAGCCTACTTGGAGGGAGTTCGGGAGATCGAGC
GGGCGTGGCGAGAGATTGGCATAA back to topprotein sequence of jgi.p|Nanoce1779_2|565697 >mRNA_4254-protein ID=mRNA_4254-protein|Name=jgi.p|Nanoce1779_2|565697|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MGKVEAYRCRPLGRGEYQQQEQTTTMTAAGTVEEFLVRLADGWQGAVTKR
LVEEGIARFLATVSSEEAWAREQGGEVMARSASGGGGSSSSGTSPKRKEK
SGSSSHPRRASGSGGGGGAGLASGTLERLVVPLPEEAANKSSLTLSETRR
GLELVRRLAAPYFAREFSQPIKELHPEVWKEYQKVITHPMDLGTITYKLR
QGRYRTVSRFFRDIELVYANCERFNLDTPSPAVLAYANHLKHHTRSLWLE
LMVAEGEDEDEKEDGMPSVWDREAVEEKRQERQDRLLFCQDLPLSKHDVR
ELREKLARVQEHVEKEDGSLGMLESLVGYGALLAVGEGGGEGGTEGGLTV
GRAWEGLGRAFQGKEWAAGEGRTMEKVVDAFHLVTAGVKERRLRGTEFSS
IWAQPVRLVWAGQKKPGGARHQAQAYWPGMVVMYGDTPDFLTRLNESRLP
LVYAKVLRKQRTGNKAGMSTHQAPRATPILPTTSTLKAKKPTWREFGRSS
GRGERLA* back to topmRNA from alignment at scaffold_10:116244..118307- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4254 ID=mRNA_4254|Name=jgi.p|Nanoce1779_2|565697|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at scaffold_10:116244..118307- (Nannochloropsis oceanica)
ATGGGGAAGGTGGAGGCCTATCGATGCCGACCGTTGGGAAGGGGAGAATA
CCAGCAGCAAGAGCAGACGACGACGATGACAGCAGCAGGGACGGTAGAGG
AATTTCTTGTGCGCTTGGCGGATGGCTGGCAAGGGGCAGTTACCAAGCGT
TTGGTCGAAGAGGGCATTGCGCGTTTTTTGGCTACTGTATCATCAGAAGA
GGCATGGGCGAGGGAGCAAGGGGGTGAAGTTATGGCTCGAAGTGCCAGTG
GAGGAGGAGGGAGCAGCAGCAGCGGCACCAGCCCCAAACGCAAAGAAAAA
TCGGGCTCTTCCTCACACCCCCGCCGCGCGTCCGGCAGTGGAGGCGGCGG
GGGTGCGGGCCTCGCCTCCGGTACATTGGAGCGGCTGGTCGTACCTTTAC
CTGAGGAGGCAGCAAATAAATCTTCGTTGACTCTCAGCGAGACGCGGCGG
GGTTTGGAGCTGGTGCGGCGGCTTGCGGCCCCTTATTTTGCTCGGGAGTT
TAGCCAGCCGATCAAGGAGCTGCATCCGGAGGTCTGGAAGGAGGTAAGGA
AAGAGGGCGGTACGAGCGACGCGATGGGAGTGGGTTTGACTGTTGAGCAG
GTGGTGCATTTAAGTTTTGGGATGTTTTCTACCTCGTGTATTTTTCCTGC
TTCATTTTGTCTCTCAACTCTTTCCTTCCTTCCTTCTTCCTTCCCTCCCT
CCCTCCCTCCCTCCCCTTGTCTCCCCAGTACCAGAAGGTAATCACGCACC
CCATGGACTTGGGCACCATCACGTACAAACTCCGGCAAGGCCGCTACCGG
ACCGTTTCACGCTTCTTCCGGGACATCGAGCTCGTCTATGCCAACTGCGA
GCGCTTCAACTTGGACACGCCCTCTCCTGCCGTTTTGGCCTACGCGAACC
ATTTGAAGCACCACACCCGCTCCCTCTGGCTGGAACTCATGGTGGCGGAG
GGCGAGGACGAGGACGAGAAGGAGGATGGGATGCCCTCGGTGTGGGATAG
GGAGGCAGTGGAAGAGAAGAGGCAAGAGCGACAGGATCGTTTGTTGTTTT
GTCAAGACCTACCACTCAGTAAACACGACGTACGGGAGCTGAGGGAAAAG
TTGGCGAGGGTGCAGGAGCATGTGGAGAAGGAAGATGGTAGCTTGGGGAT
GCTTGAAAGTCTGGTCGGGTATGGGGCCTTGCTGGCCGTGGGGGAAGGAG
GGGGGGAGGGAGGGACGGAAGGAGGGCTGACTGTCGGGAGGGCGTGGGAG
GGGTTAGGACGCGCGTTTCAAGGAAAGGAGTGGGCGGCGGGGGAGGGGAG
GACGATGGAAAAAGTAGTGGACGCCTTCCATCTGGTGACCGCGGGAGTAA
AGGAGAGGCGGTTGAGAGGGACGGAGTTCTCGTCCATATGGGCCCAGCCG
GTACGGCTTGTGTGGGCAGGGCAGAAGAAACCGGGTGGGGCGCGGCATCA
GGCGCAGGCGTATTGGCCTGGGATGGTGGTGATGTATGGGGACACGCCCG
ACTTTCTGACGCGATTGAACGAGAGCCGGCTGCCATTGGTGTATGCCAAG
GTGTTGCGGAAGCAGCGGACGGGAAACAAGGCGGGAATGAGCACGCACCA
GGTAGTGGTGGAGACGTTCGGGGCGCATGATTTTATGATTTATAACATGG
AGCTGATTCGGCCTTACACAGGTAGGTTGTGAGGAAGGGGGGGAGGGAAG
GAGGGAGAGGGAAGGCGCGTTAGGAGGTGTGGGAGGTGCAGGGTGATGAG
GATTCATAAGACAGCTCGTTTGACCTGGTACAGATAAGCAAGGCCCTCCC
TCCCTTCCCCCCTCCCTCCCTCCTCTACTTCCCACCTCGTTTCCTCCTTC
CCTCCCCCCCTCCCCACCTCATTTTTTCCATGCACATATCTATTCAACCT
ACCCTCCCTCCCTCCCTCTTGCCTTCCCGCTCACACTCCCTCCCTCCCTC
CCTCAGGCCCCGAGAGCGACCCCAATACTCCCAACAACAAGCACCTTAAA
GGCAAAGAAGCCTACTTGGAGGGAGTTCGGGAGATCGAGCGGGCGTGGCG
AGAGATTGGCATAA back to topCoding sequence (CDS) from alignment at scaffold_10:116244..118307- >mRNA_4254 ID=mRNA_4254|Name=jgi.p|Nanoce1779_2|565697|organism=Nannochloropsis oceanica|type=CDS|length=4572bp|location=Sequence derived from alignment at scaffold_10:116244..118307- (Nannochloropsis oceanica)
GCCCCGAGAGCGACCCCAATACTCCCAACAACAAGCACCTTAAAGGCAAA
GAAGCCTACTTGGAGGGAGTTCGGGAGATCGAGCGGGCGTGGCGAGAGAT
TGGCATAATACCAGAAGGTAATCACGCACCCCATGGACTTGGGCACCATC
ACGTACAAACTCCGGCAAGGCCGCTACCGGACCGTTTCACGCTTCTTCCG
GGACATCGAGCTCGTCTATGCCAACTGCGAGCGCTTCAACTTGGACACGC
CCTCTCCTGCCGTTTTGGCCTACGCGAACCATTTGAAGCACCACACCCGC
TCCCTCTGGCTGGAACTCATGGTGGCGGAGGGCGAGGACGAGGACGAGAA
GGAGGATGGGATGCCCTCGGTGTGGGATAGGGAGGCAGTGGAAGAGAAGA
GGCAAGAGCGACAGGATCGTTTGTTGTTTTGTCAAGACCTACCACTCAGT
AAACACGACGTACGGGAGCTGAGGGAAAAGTTGGCGAGGGTGCAGGAGCA
TGTGGAGAAGGAAGATGGTAGCTTGGGGATGCTTGAAAGTCTGGTCGGGT
ATGGGGCCTTGCTGGCCGTGGGGGAAGGAGGGGGGGAGGGAGGGACGGAA
GGAGGGCTGACTGTCGGGAGGGCGTGGGAGGGGTTAGGACGCGCGTTTCA
AGGAAAGGAGTGGGCGGCGGGGGAGGGGAGGACGATGGAAAAAGTAGTGG
ACGCCTTCCATCTGGTGACCGCGGGAGTAAAGGAGAGGCGGTTGAGAGGG
ACGGAGTTCTCGTCCATATGGGCCCAGCCGGTACGGCTTGTGTGGGCAGG
GCAGAAGAAACCGGGTGGGGCGCGGCATCAGGCGCAGGCGTATTGGCCTG
GGATGGTGGTGATGTATGGGGACACGCCCGACTTTCTGACGCGATTGAAC
GAGAGCCGGCTGCCATTGGTGTATGCCAAGGTGTTGCGGAAGCAGCGGAC
GGGAAACAAGGCGGGAATGAGCACGCACCAGATGGGGAAGGTGGAGGCCT
ATCGATGCCGACCGTTGGGAAGGGGAGAATACCAGCAGCAAGAGCAGACG
ACGACGATGACAGCAGCAGGGACGGTAGAGGAATTTCTTGTGCGCTTGGC
GGATGGCTGGCAAGGGGCAGTTACCAAGCGTTTGGTCGAAGAGGGCATTG
CGCGTTTTTTGGCTACTGTATCATCAGAAGAGGCATGGGCGAGGGAGCAA
GGGGGTGAAGTTATGGCTCGAAGTGCCAGTGGAGGAGGAGGGAGCAGCAG
CAGCGGCACCAGCCCCAAACGCAAAGAAAAATCGGGCTCTTCCTCACACC
CCCGCCGCGCGTCCGGCAGTGGAGGCGGCGGGGGTGCGGGCCTCGCCTCC
GGTACATTGGAGCGGCTGGTCGTACCTTTACCTGAGGAGGCAGCAAATAA
ATCTTCGTTGACTCTCAGCGAGACGCGGCGGGGTTTGGAGCTGGTGCGGC
GGCTTGCGGCCCCTTATTTTGCTCGGGAGTTTAGCCAGCCGATCAAGGAG
CTGCATCCGGAGGTCTGGAAGGAGGCCCCGAGAGCGACCCCAATACTCCC
AACAACAAGCACCTTAAAGGCAAAGAAGCCTACTTGGAGGGAGTTCGGGA
GATCGAGCGGGCGTGGCGAGAGATTGGCATAATACCAGAAGGTAATCACG
CACCCCATGGACTTGGGCACCATCACGTACAAACTCCGGCAAGGCCGCTA
CCGGACCGTTTCACGCTTCTTCCGGGACATCGAGCTCGTCTATGCCAACT
GCGAGCGCTTCAACTTGGACACGCCCTCTCCTGCCGTTTTGGCCTACGCG
AACCATTTGAAGCACCACACCCGCTCCCTCTGGCTGGAACTCATGGTGGC
GGAGGGCGAGGACGAGGACGAGAAGGAGGATGGGATGCCCTCGGTGTGGG
ATAGGGAGGCAGTGGAAGAGAAGAGGCAAGAGCGACAGGATCGTTTGTTG
TTTTGTCAAGACCTACCACTCAGTAAACACGACGTACGGGAGCTGAGGGA
AAAGTTGGCGAGGGTGCAGGAGCATGTGGAGAAGGAAGATGGTAGCTTGG
GGATGCTTGAAAGTCTGGTCGGGTATGGGGCCTTGCTGGCCGTGGGGGAA
GGAGGGGGGGAGGGAGGGACGGAAGGAGGGCTGACTGTCGGGAGGGCGTG
GGAGGGGTTAGGACGCGCGTTTCAAGGAAAGGAGTGGGCGGCGGGGGAGG
GGAGGACGATGGAAAAAGTAGTGGACGCCTTCCATCTGGTGACCGCGGGA
GTAAAGGAGAGGCGGTTGAGAGGGACGGAGTTCTCGTCCATATGGGCCCA
GCCGGTACGGCTTGTGTGGGCAGGGCAGAAGAAACCGGGTGGGGCGCGGC
ATCAGGCGCAGGCGTATTGGCCTGGGATGGTGGTGATGTATGGGGACACG
CCCGACTTTCTGACGCGATTGAACGAGAGCCGGCTGCCATTGGTGTATGC
CAAGGTGTTGCGGAAGCAGCGGACGGGAAACAAGGCGGGAATGAGCACGC
ACCAGATGGGGAAGGTGGAGGCCTATCGATGCCGACCGTTGGGAAGGGGA
GAATACCAGCAGCAAGAGCAGACGACGACGATGACAGCAGCAGGGACGGT
AGAGGAATTTCTTGTGCGCTTGGCGGATGGCTGGCAAGGGGCAGTTACCA
AGCGTTTGGTCGAAGAGGGCATTGCGCGTTTTTTGGCTACTGTATCATCA
GAAGAGGCATGGGCGAGGGAGCAAGGGGGTGAAGTTATGGCTCGAAGTGC
CAGTGGAGGAGGAGGGAGCAGCAGCAGCGGCACCAGCCCCAAACGCAAAG
AAAAATCGGGCTCTTCCTCACACCCCCGCCGCGCGTCCGGCAGTGGAGGC
GGCGGGGGTGCGGGCCTCGCCTCCGGTACATTGGAGCGGCTGGTCGTACC
TTTACCTGAGGAGGCAGCAAATAAATCTTCGTTGACTCTCAGCGAGACGC
GGCGGGGTTTGGAGCTGGTGCGGCGGCTTGCGGCCCCTTATTTTGCTCGG
GAGTTTAGCCAGCCGATCAAGGAGCTGCATCCGGAGGTCTGGAAGGAGGC
CCCGAGAGCGACCCCAATACTCCCAACAACAAGCACCTTAAAGGCAAAGA
AGCCTACTTGGAGGGAGTTCGGGAGATCGAGCGGGCGTGGCGAGAGATTG
GCATAATACCAGAAGGTAATCACGCACCCCATGGACTTGGGCACCATCAC
GTACAAACTCCGGCAAGGCCGCTACCGGACCGTTTCACGCTTCTTCCGGG
ACATCGAGCTCGTCTATGCCAACTGCGAGCGCTTCAACTTGGACACGCCC
TCTCCTGCCGTTTTGGCCTACGCGAACCATTTGAAGCACCACACCCGCTC
CCTCTGGCTGGAACTCATGGTGGCGGAGGGCGAGGACGAGGACGAGAAGG
AGGATGGGATGCCCTCGGTGTGGGATAGGGAGGCAGTGGAAGAGAAGAGG
CAAGAGCGACAGGATCGTTTGTTGTTTTGTCAAGACCTACCACTCAGTAA
ACACGACGTACGGGAGCTGAGGGAAAAGTTGGCGAGGGTGCAGGAGCATG
TGGAGAAGGAAGATGGTAGCTTGGGGATGCTTGAAAGTCTGGTCGGGTAT
GGGGCCTTGCTGGCCGTGGGGGAAGGAGGGGGGGAGGGAGGGACGGAAGG
AGGGCTGACTGTCGGGAGGGCGTGGGAGGGGTTAGGACGCGCGTTTCAAG
GAAAGGAGTGGGCGGCGGGGGAGGGGAGGACGATGGAAAAAGTAGTGGAC
GCCTTCCATCTGGTGACCGCGGGAGTAAAGGAGAGGCGGTTGAGAGGGAC
GGAGTTCTCGTCCATATGGGCCCAGCCGGTACGGCTTGTGTGGGCAGGGC
AGAAGAAACCGGGTGGGGCGCGGCATCAGGCGCAGGCGTATTGGCCTGGG
ATGGTGGTGATGTATGGGGACACGCCCGACTTTCTGACGCGATTGAACGA
GAGCCGGCTGCCATTGGTGTATGCCAAGGTGTTGCGGAAGCAGCGGACGG
GAAACAAGGCGGGAATGAGCACGCACCAGATGGGGAAGGTGGAGGCCTAT
CGATGCCGACCGTTGGGAAGGGGAGAATACCAGCAGCAAGAGCAGACGAC
GACGATGACAGCAGCAGGGACGGTAGAGGAATTTCTTGTGCGCTTGGCGG
ATGGCTGGCAAGGGGCAGTTACCAAGCGTTTGGTCGAAGAGGGCATTGCG
CGTTTTTTGGCTACTGTATCATCAGAAGAGGCATGGGCGAGGGAGCAAGG
GGGTGAAGTTATGGCTCGAAGTGCCAGTGGAGGAGGAGGGAGCAGCAGCA
GCGGCACCAGCCCCAAACGCAAAGAAAAATCGGGCTCTTCCTCACACCCC
CGCCGCGCGTCCGGCAGTGGAGGCGGCGGGGGTGCGGGCCTCGCCTCCGG
TACATTGGAGCGGCTGGTCGTACCTTTACCTGAGGAGGCAGCAAATAAAT
CTTCGTTGACTCTCAGCGAGACGCGGCGGGGTTTGGAGCTGGTGCGGCGG
CTTGCGGCCCCTTATTTTGCTCGGGAGTTTAGCCAGCCGATCAAGGAGCT
GCATCCGGAGGTCTGGAAGGAG back to top
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