jgi.p|Nanoce1779_2|18975, mRNA_4252 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|18975
Unique NamemRNA_4252
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length866
Alignment locationscaffold_10:108615..109759 +

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Properties
Property NameValue
TranscriptId19061
TrackFilteredModels2
ProteinId18975
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:108615..109759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|18975gene_4252Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|18975mRNA_4252-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4252CDS_4252Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4252 ID=mRNA_4252|Name=jgi.p|Nanoce1779_2|18975|organism=Nannochloropsis oceanica|type=mRNA|length=866bp
CACACCTTAAGGTAAGGTAAGAAAAGGTGGGGCTGTCGGCCGGCTGCGAG
GGTCCACAACAGAATGAAAATACGCGAGTTGAGATATCCAACAAAGGGAA
AGGAATGGCAATGGCGATGGTTCTCTGCTGTCCCTCCTTCTTCCCGCCTC
GGTCCTTAGAATGTCGGTCGTATGCTGCGTCGTCAAAAAGGGAGGAGGGG
GAGGAGAGAAAGCAACTAACTAACGTCAGTCTTCGCTTGCCAGGCGGTCT
GAGGGGCTTTTGGATTCCTTTCTTTATTTGTGGCCATGCTTGGAAAAGCG
GTGGCGTGGTGGTGGGCTTGGGCAGGGAGGGAGGGAAGGACGATGCAGTC
GGGCTGCTGGTTCAGTCCTCTACTACTACTTCTTCTTCTTTTTGTCTCGG
TCGTCATCACCAGCGGTCGCTTCCTCTTCTCCTCCCTTCTCATTTCTCAC
TTCTTGTGTCGTGCCCTTCTTCCGACCCGCTCTTGAGACCCCACGTCGTT
CCATTCAATCACTCTTCCCTTGTCTCTCTCTCAGTCTCTGTCTTTCTTTA
CCCCCTTCATTTTTCTCTGTCTCTATGTCTCTCTTTCTTGCTTTCTCCCT
CTCTTTCTTTTCTTCCTCTTCCTCTTCCTCTTCTCCTCTCTAGTACCCTC
CTAACTCTTATACACGTTATCCCAGGAATTATATCAGCTCACGCCTATGA
AATTTCGCGCCAAAACACAAAGGGACGGACTCCCTCCCTTCCTCTTTGCC
CCTCTCTTCCTATCTGCCTTCATAAACACCTATGAGACACAAGACTCTTT
TCTCTCCGCCCATGGTGGGTGCAAGTCTCTGGCAATCTATCGGTCGCGGG
TGTGCGAAGGCAGTAG
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protein sequence of jgi.p|Nanoce1779_2|18975

>mRNA_4252-protein ID=mRNA_4252-protein|Name=jgi.p|Nanoce1779_2|18975|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MAMAMVLCCPSFFPPRSLECRSYAASSKREEGEERKQLTNVSLRLPGGLR
GFWIPFFICGHAWKSGGVVVGLGREGGKDDAVGLLVQSSTTTSSSFCLGR
HHQRSLPLLLPSHFSLLVSCPSSDPLLRPHVVPFNHSSLVSLSVSVFLYP
LHFSLSLCLSFLLSPSLSFLPLPLPLLLSSTLLTLIHVIPGIISAHAYEI
SRQNTKGRTPSLPLCPSLPICLHKHL*
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mRNA from alignment at scaffold_10:108615..109759+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4252 ID=mRNA_4252|Name=jgi.p|Nanoce1779_2|18975|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp|location=Sequence derived from alignment at scaffold_10:108615..109759+ (Nannochloropsis oceanica)
CACACCTTAAGGTAAGGTAAGAAAAGGTGGGGCTGTCGGCCGGCTGCGAG
GGTCCACAACAGAATGAAAATACGCGAGTTGAGATATCCAACAAAGGGAA
AGGAATGGCAATGGCGATGGTTCTCTGCTGTCCCTCCTTCTTCCCGCCTC
GGTCCTTAGAATGTCGGTCGTATGCTGCGTCGTCAAAAAGGGAGGAGGGG
GAGGAGAGAAAGCAACTAACTAACGTCAGTCTTCGCTTGCCAGGCGGTCT
GAGGGGCTTTTGGATTCCTTTCTTTATTTGTGGCCATGCTTGGAAAAGCG
GTGGCGTGGTGGTGGGCTTGGGCAGGGAGGGAGGGAAGGACGATGCAGTC
GGGCTGCTGGTTCAGTCCTCTACTACTACTTCTTCTTCTTTTTGTCTCGG
TCGTCATCACCAGCGGTCGCTTCCTCTTCTCCTCCCTTCTCATTTCTCAC
TTCTTGTGTCGTGCCCTTCTTCCGACCCGCTCTTGAGACCCCACGTCGTT
CCATTCAATCACTCTTCCCTTGTCTCTCTCTCAGTCTCTGTCTTTCTTTA
CCCCCTTCATTTTTCTCTGTCTCTATGTCTCTCTTTCTTGCTTTCTCCCT
CTCTTTCTTTTCTTCCTCTTCCTCTTCCTCTTCTCCTCTCTAGTACCCTC
CTAACTCTTATACACGTTATCCCAGGAATTATATCAGCTCACGCCTATGA
AATTTCGCGCCAAAACACAAAGGGACGGACTCCCTCCCTTCCTCTTTGCC
CCTCTCTTCCTATCTGCCTTCATAAACACCTATGAGACACAAGACTCTTT
TCTCTCCGCCATCCATTGCCCTCCCTCCCTCCCTTCCTCCTTCTCTCCCT
CGGTACCAGCCTCTCTCCTCTCTAGAAATCCAAAATGTTATTCGTGATCT
GATTTGCCACATCCATCATGCTGATCTCCAGCACCTCGTTCGCCTGCTGG
GCCTCCCTTCCTGATTCCTTCCCTCCCTCCCTCCCCCTCTCCTCCCTGCC
ATTTTCCAACGACGAGGCAGAAAAAGAGGTTGAAGACCAAGCAGACGAAG
AAGTCGAGGACGAGGACGGGAAGGAGGGCGAGGTGGCACCATGGTGGGTG
CAAGTCTCTGGCAATCTATCGGTCGCGGGTGTGCGAAGGCAGTAG
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Coding sequence (CDS) from alignment at scaffold_10:108615..109759+

>mRNA_4252 ID=mRNA_4252|Name=jgi.p|Nanoce1779_2|18975|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_10:108615..109759+ (Nannochloropsis oceanica)
ATGGCAATGGCGATGGTTCTCTGCTGTCCCTCCTTCTTCCCGCCTCGGTC
CTTAGAATGTCGGTCGTATGCTGCGTCGTCAAAAAGGGAGGAGGGGGAGG
AGAGAAAGCAACTAACTAACGTCAGTCTTCGCTTGCCAGGCGGTCTGAGG
GGCTTTTGGATTCCTTTCTTTATTTGTGGCCATGCTTGGAAAAGCGGTGG
CGTGGTGGTGGGCTTGGGCAGGGAGGGAGGGAAGGACGATGCAGTCGGGC
TGCTGGTTCAGTCCTCTACTACTACTTCTTCTTCTTTTTGTCTCGGTCGT
CATCACCAGCGGTCGCTTCCTCTTCTCCTCCCTTCTCATTTCTCACTTCT
TGTGTCGTGCCCTTCTTCCGACCCGCTCTTGAGACCCCACGTCGTTCCAT
TCAATCACTCTTCCCTTGTCTCTCTCTCAGTCTCTGTCTTTCTTTACCCC
CTTCATTTTTCTCTGTCTCTATGTCTCTCTTTCTTGCTTTCTCCCTCTCT
TTCTTTTCTTCCTCTTCCTCTTCCTCTTCTCCTCTCTAGTACCCTCCTAA
CTCTTATACACGTTATCCCAGGAATTATATCAGCTCACGCCTATGAAATT
TCGCGCCAAAACACAAAGGGACGGACTCCCTCCCTTCCTCTTTGCCCCTC
TCTTCCTATCTGCCTTCATAAACACCTATGA
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Synonyms
Publications