jgi.p|Nanoce1779_2|670659, mRNA_4251 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670659
Unique NamemRNA_4251
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1461
Alignment locationscaffold_10:106920..108380 +

Link to JBrowse

Properties
Property NameValue
TranscriptId670745
TrackFilteredModels2
ProteinId670659
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:106920..108380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670659gene_4251Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670659mRNA_4251-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4251CDS_4251Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4251 ID=mRNA_4251|Name=jgi.p|Nanoce1779_2|670659|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
CGGCCTCCTCTTCCCTTTTAAGTAGCTAAGTTACATCACAGACACTTATG
CTTTTTTATTATCCACAACACCCTCCCAAAAAAACAAAAAAACATACATA
CAGGCGTGCTTGTTCCGTGCGCGAGGAAGCGGCAGCGCGCGTTCAAACCT
CGCGAGATGTTGCTCCAACAAACAGCTGGAGGAGGAGACAAAGGAGCGGA
AAATGGGGTGGAGTTGACTATTTCGACCTTAGGGTGTGCAGCGGCACCCG
TCTTTCGCACCGCTACCTTGGAGGACTGCCGTGTAGGCGTGACATTTCTT
GATTCCCTGGCCCCAAAGGGAGAAATGAGCGGCCAGAGAGGAAATGCTGC
GCGGCTAGGAGGTGCACGGGGAGAAGGAGGAGGAGGAGGGCTGATTCCGG
GGACGGTGCTGGAGCTGTACGGCGCATCGGGGAGCGGCAAGACCGAAGTG
GCACTCAATGCCGTGTGTGGTTGGGTGCTGCCCAAGGCGTTAGGAGGGGT
GGGAGGCGTTGCTGTGATCGTGGATCTGGACTTCCGGGTGGATGTGCGCC
GGTTGCGGTGCTTGCTCTTAGCTCGTATCCGACGGGCCTTGGCAACAGCA
GGAGGAGGAGCCGTTGAAGGACGAGATAATGGACTGCAGAATGGACAGCC
AACACATCGAAAATGCCATCAAAGCAACAAGAACGATAAAGAAACTGCAC
ATCCCTCCTCTTTCTCAACCGCCACCGCATTCACAGCTTCCCAATACCTA
ACCGCGGCCCTCCACCAAATCGTCCTCGCCCGGTGCATGGACGAGCTCGA
AGCCTTCTCCGTCCTAGAAACCCTCAAATTTGATCTTGACAAAGGTCCAG
GCGCTGGTGTCCCAACCCTTCTCGTTCTGGACAGTCTGGGGTCGTTATTT
TATGAAAGAAAAGCGGCGGAGAGCTGCCAGCAAGGGCAAACCTGTTTTGA
TTTCATGGTTGCGCGGTGCGTGGGTCGAATGGCAACAGCGCGGGCAGTTG
CTGTGGTGGCGTGCAAGCCTGCTTTGTTCGCGGGGGCACGGACGGTGCAC
CATGGAGGGAGAGAGATGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGTA
CCTGTACCTCGGGCTTGAGCATAAGGAGTACATGCCAGGGCAGTGGTCTA
AGCTGGTGACGCATCGGATGACGCTGGTGAAGGAAGATGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAG
GGGGAGAGCAGTTTTCTCAGCGAGGGTGGTGTCGATGGGCATGGTGCCGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATACCAGCAGCAGCAGCGA
CTGCTGCAGGGAGAAGGACGAGGAGGGGCAGTGGCAGTGCATGCGTGGTT
CCAGGTGGGAAAGGAGGGAGTACTAGCGTATGGCGAAGGACAGGAAGGAG
AGTGCCAGTAA
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protein sequence of jgi.p|Nanoce1779_2|670659

>mRNA_4251-protein ID=mRNA_4251-protein|Name=jgi.p|Nanoce1779_2|670659|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MLLQQTAGGGDKGAENGVELTISTLGCAAAPVFRTATLEDCRVGVTFLDS
LAPKGEMSGQRGNAARLGGARGEGGGGGLIPGTVLELYGASGSGKTEVAL
NAVCGWVLPKALGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGG
GAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTA
ALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPTLLVLDSLGSLFYE
RKAAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHG
GREMEGGREGGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVKEDGGGGGG
GGGGGGGGGGGGGERGRAVFSARVVSMGMVPQQQQQQQQQQQYQQQQRLL
QGEGRGGAVAVHAWFQVGKEGVLAYGEGQEGECQ*
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mRNA from alignment at scaffold_10:106920..108380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4251 ID=mRNA_4251|Name=jgi.p|Nanoce1779_2|670659|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp|location=Sequence derived from alignment at scaffold_10:106920..108380+ (Nannochloropsis oceanica)
CGGCCTCCTCTTCCCTTTTAAGTAGCTAAGTTACATCACAGACACTTATG
CTTTTTTATTATCCACAACACCCTCCCAAAAAAACAAAAAAACATACATA
CAGGCGTGCTTGTTCCGTGCGCGAGGAAGCGGCAGCGCGCGTTCAAACCT
CGCGAGATGTTGCTCCAACAAACAGCTGGAGGAGGAGACAAAGGAGCGGA
AAATGGGGTGGAGTTGACTATTTCGACCTTAGGGTGTGCAGCGGCACCCG
TCTTTCGCACCGCTACCTTGGAGGACTGCCGTGTAGGCGTGACATTTCTT
GATTCCCTGGCCCCAAAGGGAGAAATGAGCGGCCAGAGAGGAAATGCTGC
GCGGCTAGGAGGTGCACGGGGAGAAGGAGGAGGAGGAGGGCTGATTCCGG
GGACGGTGCTGGAGCTGTACGGCGCATCGGGGAGCGGCAAGACCGAAGTG
GCACTCAATGCCGTGTGTGGTTGGGTGCTGCCCAAGGCGTTAGGAGGGGT
GGGAGGCGTTGCTGTGATCGTGGATCTGGACTTCCGGGTGGATGTGCGCC
GGTTGCGGTGCTTGCTCTTAGCTCGTATCCGACGGGCCTTGGCAACAGCA
GGAGGAGGAGCCGTTGAAGGACGAGATAATGGACTGCAGAATGGACAGCC
AACACATCGAAAATGCCATCAAAGCAACAAGAACGATAAAGAAACTGCAC
ATCCCTCCTCTTTCTCAACCGCCACCGCATTCACAGCTTCCCAATACCTA
ACCGCGGCCCTCCACCAAATCGTCCTCGCCCGGTGCATGGACGAGCTCGA
AGCCTTCTCCGTCCTAGAAACCCTCAAATTTGATCTTGACAAAGGTCCAG
GCGCTGGTGTCCCAACCCTTCTCGTTCTGGACAGTCTGGGGTCGTTATTT
TATGAAAGAAAAGCGGCGGAGAGCTGCCAGCAAGGGCAAACCTGTTTTGA
TTTCATGGTTGCGCGGTGCGTGGGTCGAATGGCAACAGCGCGGGCAGTTG
CTGTGGTGGCGTGCAAGCCTGCTTTGTTCGCGGGGGCACGGACGGTGCAC
CATGGAGGGAGAGAGATGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGTA
CCTGTACCTCGGGCTTGAGCATAAGGAGTACATGCCAGGGCAGTGGTCTA
AGCTGGTGACGCATCGGATGACGCTGGTGAAGGAAGATGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAG
GGGGAGAGCAGTTTTCTCAGCGAGGGTGGTGTCGATGGGCATGGTGCCGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATACCAGCAGCAGCAGCGA
CTGCTGCAGGGAGAAGGACGAGGAGGGGCAGTGGCAGTGCATGCGTGGTT
CCAGGTGGGAAAGGAGGGAGTACTAGCGTATGGCGAAGGACAGGAAGGAG
AGTGCCAGTAA
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Coding sequence (CDS) from alignment at scaffold_10:106920..108380+

>mRNA_4251 ID=mRNA_4251|Name=jgi.p|Nanoce1779_2|670659|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_10:106920..108380+ (Nannochloropsis oceanica)
ATGTTGCTCCAACAAACAGCTGGAGGAGGAGACAAAGGAGCGGAAAATGG
GGTGGAGTTGACTATTTCGACCTTAGGGTGTGCAGCGGCACCCGTCTTTC
GCACCGCTACCTTGGAGGACTGCCGTGTAGGCGTGACATTTCTTGATTCC
CTGGCCCCAAAGGGAGAAATGAGCGGCCAGAGAGGAAATGCTGCGCGGCT
AGGAGGTGCACGGGGAGAAGGAGGAGGAGGAGGGCTGATTCCGGGGACGG
TGCTGGAGCTGTACGGCGCATCGGGGAGCGGCAAGACCGAAGTGGCACTC
AATGCCGTGTGTGGTTGGGTGCTGCCCAAGGCGTTAGGAGGGGTGGGAGG
CGTTGCTGTGATCGTGGATCTGGACTTCCGGGTGGATGTGCGCCGGTTGC
GGTGCTTGCTCTTAGCTCGTATCCGACGGGCCTTGGCAACAGCAGGAGGA
GGAGCCGTTGAAGGACGAGATAATGGACTGCAGAATGGACAGCCAACACA
TCGAAAATGCCATCAAAGCAACAAGAACGATAAAGAAACTGCACATCCCT
CCTCTTTCTCAACCGCCACCGCATTCACAGCTTCCCAATACCTAACCGCG
GCCCTCCACCAAATCGTCCTCGCCCGGTGCATGGACGAGCTCGAAGCCTT
CTCCGTCCTAGAAACCCTCAAATTTGATCTTGACAAAGGTCCAGGCGCTG
GTGTCCCAACCCTTCTCGTTCTGGACAGTCTGGGGTCGTTATTTTATGAA
AGAAAAGCGGCGGAGAGCTGCCAGCAAGGGCAAACCTGTTTTGATTTCAT
GGTTGCGCGGTGCGTGGGTCGAATGGCAACAGCGCGGGCAGTTGCTGTGG
TGGCGTGCAAGCCTGCTTTGTTCGCGGGGGCACGGACGGTGCACCATGGA
GGGAGAGAGATGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGTACCTGTA
CCTCGGGCTTGAGCATAAGGAGTACATGCCAGGGCAGTGGTCTAAGCTGG
TGACGCATCGGATGACGCTGGTGAAGGAAGATGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGGGGGAG
AGCAGTTTTCTCAGCGAGGGTGGTGTCGATGGGCATGGTGCCGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAATACCAGCAGCAGCAGCGACTGCTG
CAGGGAGAAGGACGAGGAGGGGCAGTGGCAGTGCATGCGTGGTTCCAGGT
GGGAAAGGAGGGAGTACTAGCGTATGGCGAAGGACAGGAAGGAGAGTGCC
AGTAA
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Synonyms
Publications