jgi.p|Nanoce1779_2|670658, mRNA_4250 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670658
Unique NamemRNA_4250
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1168
Alignment locationscaffold_10:105618..106856 -

Link to JBrowse

Properties
Property NameValue
TranscriptId670744
TrackFilteredModels2
ProteinId670658
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:105618..106856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670658gene_4250Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670658mRNA_4250-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4250CDS_4250Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4250 ID=mRNA_4250|Name=jgi.p|Nanoce1779_2|670658|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp
AGATAGGCAAGATGGCCGCGCGAGACGCACTCATTACGCCCATAAAAGAT
TGGGACGCCGCATTGTCCGACGAGCGACTTCTTGTCATTGATGTCCACCA
AGAATGGAGTGGATCTTGTACCGACGTGATGGAGCCCTTTTTCAAGACAT
TGCGGGCTGAGACGGAAAACCGCGTGAAATTCCTCAGTGCGAGTCGCCCC
ACTTTCTATGCCAAACTGACAAGCTTGTTTCCCTCCGCCGCCGCCAAGCA
AGCTTTGGGACATGTTGCGGACGGCGGCAGTGGTGGAGGAGATAGTCCCC
TGACAAATGGGTGTACCCCCTTATTTTTGCTAGTCAAAGATAAAATGGCA
GTGGGCACGGTAACGGGCGTCGACCCGGGGATGATCTCTGCTTTGGTCAA
GCAGCATTTGTCGATCAAGTAGAGAGAGGAGCTAGCAGAAGAAGTGGAGA
GATCAGGAGTACTTGAATATTCTGGCCGATGCTCTGAGATGAGAGAAAAT
GCGCAAGAGCGAGCTATAACACGCGCTCCCCTTCTATCGTTTTTCATATC
CTATATAATTTCCATGAATGCATGTCTTATAATTTCCATTGACGCTGTTG
TGTTTTCCTACTTACGGCTTCTTTGGCTTGCGTGTACATTCTCTGAGCTC
CGTTTCATTGTAATGCTATGGTGCACAGCACCAACGATTGATAGCCATTT
GACCTTTCTCCTTCACCGCATGTCAAACCACCACATCCTCAACCCTTTTT
GCCACCTCCTAGATCCAAAGCCGCCGCCCGTGCGGCCACCACAGGATTCT
CGGGGCTCTTTTTCCACATCTCAAAGATTCGGTCCTTGTATTGCGACATG
CGCATGCCCGGCATAGACTCCTTCAGCTCCACCAGCATCCTCTCCTCGAA
TGCCTTGTGCGCAGCTTTCTGTCGTTTCTCAGGATGAGAGTCCCCTCCCG
CAGCCCCACCACCACTGCCCAGCAAGTCAATTGCTTGGTCCAGATTCCGC
GCAACCTCGACTCCCGTCATTCTTCTGTTGGGGTTCGCTTCGAGCGGTGG
GAGCCCCTCGTCTTCGGACGACTCGTCCTCCGATGACCCCGCCTTACACT
TCTTGCCCTTCTTACCCCCACCACTAGCCGTCTTCTTCTTCTCCTCCTTC
TTCTTTTTCTCCATTTCC
back to top

protein sequence of jgi.p|Nanoce1779_2|670658

>mRNA_4250-protein ID=mRNA_4250-protein|Name=jgi.p|Nanoce1779_2|670658|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MAARDALITPIKDWDAALSDERLLVIDVHQEWSGSCTDVMEPFFKTLRAE
TENRVKFLSASRPTFYAKLTSLFPSAAAKQALGHVADGGSGGGDSPLTNG
CTPLFLLVKDKMAVGTVTGVDPGMISALVKQHLSIK*
back to top

mRNA from alignment at scaffold_10:105618..106856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4250 ID=mRNA_4250|Name=jgi.p|Nanoce1779_2|670658|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at scaffold_10:105618..106856- (Nannochloropsis oceanica)
AGATAGGCAAGATGGCCGCGCGAGACGCACTCATTACGCCCATAAAAGAT
TGGGACGCCGCATTGTCCGACGAGCGACTTCTTGGTGAGTGTATTAATAA
TGCCAAATTATGCCGCCACGCCTCCCACGAGTATTCACCCCCCGCCAAAA
CATAGTCATTGATGTCCACCAAGAATGGAGTGGATCTTGTACCGACGTGA
TGGAGCCCTTTTTCAAGACATTGCGGGCTGAGACGGAAAACCGCGTGAAA
TTCCTCAGTGCGAGTCGCCCCACTTTCTATGCCAAACTGACAAGCTTGTT
TCCCTCCGCCGCCGCCAAGCAAGCTTTGGGACATGTTGCGGACGGCGGCA
GTGGTGGAGGAGATAGTCCCCTGACAAATGGGTGTACCCCCTTATTTTTG
CTAGTCAAAGATAAAATGGCAGTGGGCACGGTAACGGGCGTCGACCCGGG
GATGATCTCTGCTTTGGTCAAGCAGCATTTGTCGATCAAGTAGAGAGAGG
AGCTAGCAGAAGAAGTGGAGAGATCAGGAGTACTTGAATATTCTGGCCGA
TGCTCTGAGATGAGAGAAAATGCGCAAGAGCGAGCTATAACACGCGCTCC
CCTTCTATCGTTTTTCATATCCTATATAATTTCCATGAATGCATGTCTTA
TAATTTCCATTGACGCTGTTGTGTTTTCCTACTTACGGCTTCTTTGGCTT
GCGTGTACATTCTCTGAGCTCCGTTTCATTGTAATGCTATGGTGCACAGC
ACCAACGATTGATAGCCATTTGACCTTTCTCCTTCACCGCATGTCAAACC
ACCACATCCTCAACCCTTTTTGCCACCTCCTAGATCCAAAGCCGCCGCCC
GTGCGGCCACCACAGGATTCTCGGGGCTCTTTTTCCACATCTCAAAGATT
CGGTCCTTGTATTGCGACATGCGCATGCCCGGCATAGACTCCTTCAGCTC
CACCAGCATCCTCTCCTCGAATGCCTTGTGCGCAGCTTTCTGTCGTTTCT
CAGGATGAGAGTCCCCTCCCGCAGCCCCACCACCACTGCCCAGCAAGTCA
ATTGCTTGGTCCAGATTCCGCGCAACCTCGACTCCCGTCATTCTTCTGTT
GGGGTTCGCTTCGAGCGGTGGGAGCCCCTCGTCTTCGGACGACTCGTCCT
CCGATGACCCCGCCTTACACTTCTTGCCCTTCTTACCCCCACCACTAGCC
GTCTTCTTCTTCTCCTCCTTCTTCTTTTTCTCCATTTCC
back to top

Coding sequence (CDS) from alignment at scaffold_10:105618..106856-

>mRNA_4250 ID=mRNA_4250|Name=jgi.p|Nanoce1779_2|670658|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_10:105618..106856- (Nannochloropsis oceanica)
TCATTGATGTCCACCAAGAATGGAGTGGATCTTGTACCGACGTGATGGAG
CCCTTTTTCAAGACATTGCGGGCTGAGACGGAAAACCGCGTGAAATTCCT
CAGTGCGAGTCGCCCCACTTTCTATGCCAAACTGACAAGCTTGTTTCCCT
CCGCCGCCGCCAAGCAAGCTTTGGGACATGTTGCGGACGGCGGCAGTGGT
GGAGGAGATAGTCCCCTGACAAATGGGTGTACCCCCTTATTTTTGCTAGT
CAAAGATAAAATGGCAGTGGGCACGGTAACGGGCGTCGACCCGGGGATGA
TCTCTGCTTTGGTCAAGCAGCATTTGTCGATCAAGTAGATGGCCGCGCGA
GACGCACTCATTACGCCCATAAAAGATTGGGACGCCGCATTGTCCGACGA
GCGACTTCTTGTCATTGATGTCCACCAAGAATGGAGTGGATCTTGTACCG
ACGTGATGGAGCCCTTTTTCAAGACATTGCGGGCTGAGACGGAAAACCGC
GTGAAATTCCTCAGTGCGAGTCGCCCCACTTTCTATGCCAAACTGACAAG
CTTGTTTCCCTCCGCCGCCGCCAAGCAAGCTTTGGGACATGTTGCGGACG
GCGGCAGTGGTGGAGGAGATAGTCCCCTGACAAATGGGTGTACCCCCTTA
TTTTTGCTAGTCAAAGATAAAATGGCAGTGGGCACGGTAACGGGCGTCGA
CCCGGGGATGATCTCTGCTTTGGTCAAGCAGCATTTGTCGATCAAGTAGA
TGGCCGCGCGAGACGCACTCATTACGCCCATAAAAGATTGGGACGCCGCA
TTGTCCGACGAGCGACTTCTTG
back to top
Synonyms
Publications