jgi.p|Nanoce1779_2|577287, mRNA_425 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577287
Unique NamemRNA_425
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1338
Alignment locationscaffold_3:1047891..1049228 +

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Properties
Property NameValue
TranscriptId577373
TrackFilteredModels2
ProteinId577287
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1047891..1049228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577287gene_425Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577287mRNA_425-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_425CDS_425Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_425 ID=mRNA_425|Name=jgi.p|Nanoce1779_2|577287|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
CGGGCGGAGTGGGACGATGAGACTATGGACGTGCTGGCGGCCTTAGAGCT
ACTGACGCGGGAGCCGAGGAAGGCAGGAGTGGGAGGTGGAGGAGGAGCAG
CAGCAGCATCGGCATTGCCACCACCATTATTAGCAGCAGGAAATGGACCA
ACACGAGCAAAAGTCGGAATGAATAAAGGAAAAGAATCGACAGTGATAGT
GGACAGCGAGCGTGTTGGAAAGGAAGGAGGGGGAGGTGGAAATGGGAGTA
TGAAGGGTAAGGCGAAGCCAGCTAGTAGCGGGGATAAAGGAGCGATGATG
TCTGTGCCTGATCTTTCAAAACCTATGCCTGTTTGTACGGGACGATTTGA
TGACGTCGGACCGCATTCACCTTCCGGGGATAAAAACGGAGAGGAGGAGG
AAGGGGGAGAGGAAGTGGCCGGTGCGCTTGCCGGTGGTGGTACTGCATCT
GCTGCGGTTACTACTCATAAGGGAAAGGAGGGGGATGGGAAAGAGGAATC
GGCTATAGAGATTAGCGATGATTTGGCGTTTTTGATGAGCCTGGGGGAGG
AGGAAGGGCGCGAGGAAGGGGTAGGAGGAGGAATGGAGGACGAGGACGAT
GACCTGGCCCTGCTGGCGCAGACGAGAGGGGACTCGGAAGGGTCGATAGA
AGGGGAGAGTGATGATGAGGATGAATGAAGAGGAGAAAAGTGAAGATGAT
GGTATCCGAAAGCGTTTGGATAAAAATTATTTCACATGTATACTTAGCGA
CACCAACAATGTGAAAAGTGACAAAGAGGACGTCGATGACAACGAAATCA
AAAGGAAAGATAAGGACAGAAATTATGACAATAAATAATACGATAAATTA
CGAATGAGGTTTCTGCGTCGAGTTGATACCCTTAAAGTAGATAAAGAGGC
ATCAATTTAATTTGTCAACTGGTCGTCTGGTTTTACTCGCCTCTCAGGGA
AAAATTTATGGAGATGTGGTAGAATATTTGCCTTTTCCCACTATCTTTCT
TACTGTCATTTTTCTCCAATGCACTGCTATCCCTATCACTACTACTTATC
TCTCCTCCTCCTTCACCGTAGGTTTCAATTGCTCTTTTCATATCGTCCCG
TCTCATGGTCTTGCTGCAGCGCATTTGCTTCCAGACGCCTCTTTTTCCCG
GACCCCGAAATGTACAAGGCGCAGAAAGTAATAATGAGAGAACAGCATTC
ATATGGTTCTCATTGTTGCAGTTGCCGTTCATGAGCGGCGTGCACCACCA
TGCTATGGCATTTTATTGCGGCACGGAACGTGCGGTGTCGTGGGACGTTG
ACTCAGGCTTGGTGAGCTGAGAGAAGATTCTGTTTACC
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protein sequence of jgi.p|Nanoce1779_2|577287

>mRNA_425-protein ID=mRNA_425-protein|Name=jgi.p|Nanoce1779_2|577287|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MDVLAALELLTREPRKAGVGGGGGAAAASALPPPLLAAGNGPTRAKVGMN
KGKESTVIVDSERVGKEGGGGGNGSMKGKAKPASSGDKGAMMSVPDLSKP
MPVCTGRFDDVGPHSPSGDKNGEEEEGGEEVAGALAGGGTASAAVTTHKG
KEGDGKEESAIEISDDLAFLMSLGEEEGREEGVGGGMEDEDDDLALLAQT
RGDSEGSIEGESDDEDE*
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mRNA from alignment at scaffold_3:1047891..1049228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_425 ID=mRNA_425|Name=jgi.p|Nanoce1779_2|577287|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp|location=Sequence derived from alignment at scaffold_3:1047891..1049228+ (Nannochloropsis oceanica)
CGGGCGGAGTGGGACGATGAGACTATGGACGTGCTGGCGGCCTTAGAGCT
ACTGACGCGGGAGCCGAGGAAGGCAGGAGTGGGAGGTGGAGGAGGAGCAG
CAGCAGCATCGGCATTGCCACCACCATTATTAGCAGCAGGAAATGGACCA
ACACGAGCAAAAGTCGGAATGAATAAAGGAAAAGAATCGACAGTGATAGT
GGACAGCGAGCGTGTTGGAAAGGAAGGAGGGGGAGGTGGAAATGGGAGTA
TGAAGGGTAAGGCGAAGCCAGCTAGTAGCGGGGATAAAGGAGCGATGATG
TCTGTGCCTGATCTTTCAAAACCTATGCCTGTTTGTACGGGACGATTTGA
TGACGTCGGACCGCATTCACCTTCCGGGGATAAAAACGGAGAGGAGGAGG
AAGGGGGAGAGGAAGTGGCCGGTGCGCTTGCCGGTGGTGGTACTGCATCT
GCTGCGGTTACTACTCATAAGGGAAAGGAGGGGGATGGGAAAGAGGAATC
GGCTATAGAGATTAGCGATGATTTGGCGTTTTTGATGAGCCTGGGGGAGG
AGGAAGGGCGCGAGGAAGGGGTAGGAGGAGGAATGGAGGACGAGGACGAT
GACCTGGCCCTGCTGGCGCAGACGAGAGGGGACTCGGAAGGGTCGATAGA
AGGGGAGAGTGATGATGAGGATGAATGAAGAGGAGAAAAGTGAAGATGAT
GGTATCCGAAAGCGTTTGGATAAAAATTATTTCACATGTATACTTAGCGA
CACCAACAATGTGAAAAGTGACAAAGAGGACGTCGATGACAACGAAATCA
AAAGGAAAGATAAGGACAGAAATTATGACAATAAATAATACGATAAATTA
CGAATGAGGTTTCTGCGTCGAGTTGATACCCTTAAAGTAGATAAAGAGGC
ATCAATTTAATTTGTCAACTGGTCGTCTGGTTTTACTCGCCTCTCAGGGA
AAAATTTATGGAGATGTGGTAGAATATTTGCCTTTTCCCACTATCTTTCT
TACTGTCATTTTTCTCCAATGCACTGCTATCCCTATCACTACTACTTATC
TCTCCTCCTCCTTCACCGTAGGTTTCAATTGCTCTTTTCATATCGTCCCG
TCTCATGGTCTTGCTGCAGCGCATTTGCTTCCAGACGCCTCTTTTTCCCG
GACCCCGAAATGTACAAGGCGCAGAAAGTAATAATGAGAGAACAGCATTC
ATATGGTTCTCATTGTTGCAGTTGCCGTTCATGAGCGGCGTGCACCACCA
TGCTATGGCATTTTATTGCGGCACGGAACGTGCGGTGTCGTGGGACGTTG
ACTCAGGCTTGGTGAGCTGAGAGAAGATTCTGTTTACC
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Coding sequence (CDS) from alignment at scaffold_3:1047891..1049228+

>mRNA_425 ID=mRNA_425|Name=jgi.p|Nanoce1779_2|577287|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_3:1047891..1049228+ (Nannochloropsis oceanica)
ATGGACGTGCTGGCGGCCTTAGAGCTACTGACGCGGGAGCCGAGGAAGGC
AGGAGTGGGAGGTGGAGGAGGAGCAGCAGCAGCATCGGCATTGCCACCAC
CATTATTAGCAGCAGGAAATGGACCAACACGAGCAAAAGTCGGAATGAAT
AAAGGAAAAGAATCGACAGTGATAGTGGACAGCGAGCGTGTTGGAAAGGA
AGGAGGGGGAGGTGGAAATGGGAGTATGAAGGGTAAGGCGAAGCCAGCTA
GTAGCGGGGATAAAGGAGCGATGATGTCTGTGCCTGATCTTTCAAAACCT
ATGCCTGTTTGTACGGGACGATTTGATGACGTCGGACCGCATTCACCTTC
CGGGGATAAAAACGGAGAGGAGGAGGAAGGGGGAGAGGAAGTGGCCGGTG
CGCTTGCCGGTGGTGGTACTGCATCTGCTGCGGTTACTACTCATAAGGGA
AAGGAGGGGGATGGGAAAGAGGAATCGGCTATAGAGATTAGCGATGATTT
GGCGTTTTTGATGAGCCTGGGGGAGGAGGAAGGGCGCGAGGAAGGGGTAG
GAGGAGGAATGGAGGACGAGGACGATGACCTGGCCCTGCTGGCGCAGACG
AGAGGGGACTCGGAAGGGTCGATAGAAGGGGAGAGTGATGATGAGGATGA
ATGA
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Synonyms
Publications