jgi.p|Nanoce1779_2|588502, mRNA_4249 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588502
Unique NamemRNA_4249
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1240
Alignment locationscaffold_10:105617..106856 +

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Properties
Property NameValue
TranscriptId588588
TrackFilteredModels2
ProteinId588502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:105617..106856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588502gene_4249Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588502mRNA_4249-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4249CDS_4249Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4249 ID=mRNA_4249|Name=jgi.p|Nanoce1779_2|588502|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp
TGGAAATGGAGAAAAAGAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGT
GGGGGTAAGAAGGGCAAGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTC
GTCCGAAGACGAGGGGCTCCCACCGCTCGAAGCGAACCCCAACAGAAGAA
TGACGGGAGTCGAGGTTGCGCGGAATCTGGACCAAGCAATTGACTTGCTG
GGCAGTGGTGGTGGGGCTGCGGGAGGGGACTCTCATCCTGAGAAACGACA
GAAAGCTGCGCACAAGGCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGG
AGTCTATGCCGGGCATGCGCATGTCGCAATACAAGGACCGAATCTTTGAG
ATGTGGAAAAAGAGCCCCGAGAATCCTGTGGTGGCCGCACGGGCGGCGGC
TTTGGATCTAGGAGGTGGCAAAAAGGGTTGAGGATGTGGTGGTTTGACAT
GCGGTGAAGGAGAAAGGTCAAATGGCTATCAATCGTTGGTGCTGTGCACC
ATAGCATTACAATGAAACGGAGCTCAGAGAATGTACACGCAAGCCAAAGA
AGCCGTAAGTAGGAAAACACAACAGCGTCAATGGAAATTATAAGACATGC
ATTCATGGAAATTATATAGGATATGAAAAACGATAGAAGGGGAGCGCGTG
TTATAGCTCGCTCTTGCGCATTTTCTCTCATCTCAGAGCATCGGCCAGAA
TATTCAAGTACTCCTGATCTCTCCACTTCTTCTGCTAGCTCCTCTCTCTA
CTTGATCGACAAATGCTGCTTGACCAAAGCAGAGATCATCCCCGGGTCGA
CGCCCGTTACCGTGCCCACTGCCATTTTATCTTTGACTAGCAAAAATAAG
GGGGTACACCCATTTGTCAGGGGACTATCTCCTCCACCACTGCCGCCGTC
CGCAACATGTCCCAAAGCTTGCTTGGCGGCGGCGGAGGGAAACAAGCTTG
TCAGTTTGGCATAGAAAGTGGGGCGACTCGCACTGAGGAATTTCACGCGG
TTTTCCGTCTCAGCCCGCAATGTCTTGAAAAAGGGCTCCATCACGTCGGT
ACAAGATCCACTCCATTCTTGGTGGACATCAATGACTATGTTTTGGCGGG
GGGTGAATACTCGTGGGAGGCGTGGCGGCATAATTTGGCATTATTAATAC
ACTCACCAAGAAGTCGCTCGTCGGACAATGCGGCGTCCCAATCTTTTATG
GGCGTAATGAGTGCGTCTCGCGCGGCCATCTTGCCTATCT
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protein sequence of jgi.p|Nanoce1779_2|588502

>mRNA_4249-protein ID=mRNA_4249-protein|Name=jgi.p|Nanoce1779_2|588502|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MEKKKKEEKKKTASGGGKKGKKCKAGSSEDESSEDEGLPPLEANPNRRMT
GVEVARNLDQAIDLLGSGGGAAGGDSHPEKRQKAAHKAFEERMLVELKES
MPGMRMSQYKDRIFEMWKKSPENPVVAARAAALDLGGGKKG*
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mRNA from alignment at scaffold_10:105617..106856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4249 ID=mRNA_4249|Name=jgi.p|Nanoce1779_2|588502|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp|location=Sequence derived from alignment at scaffold_10:105617..106856+ (Nannochloropsis oceanica)
TGGAAATGGAGAAAAAGAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGT
GGGGGTAAGAAGGGCAAGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTC
GTCCGAAGACGAGGGGCTCCCACCGCTCGAAGCGAACCCCAACAGAAGAA
TGACGGGAGTCGAGGTTGCGCGGAATCTGGACCAAGCAATTGACTTGCTG
GGCAGTGGTGGTGGGGCTGCGGGAGGGGACTCTCATCCTGAGAAACGACA
GAAAGCTGCGCACAAGGCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGG
AGTCTATGCCGGGCATGCGCATGTCGCAATACAAGGACCGAATCTTTGAG
ATGTGGAAAAAGAGCCCCGAGAATCCTGTGGTGGCCGCACGGGCGGCGGC
TTTGGATCTAGGAGGTGGCAAAAAGGGTTGAGGATGTGGTGGTTTGACAT
GCGGTGAAGGAGAAAGGTCAAATGGCTATCAATCGTTGGTGCTGTGCACC
ATAGCATTACAATGAAACGGAGCTCAGAGAATGTACACGCAAGCCAAAGA
AGCCGTAAGTAGGAAAACACAACAGCGTCAATGGAAATTATAAGACATGC
ATTCATGGAAATTATATAGGATATGAAAAACGATAGAAGGGGAGCGCGTG
TTATAGCTCGCTCTTGCGCATTTTCTCTCATCTCAGAGCATCGGCCAGAA
TATTCAAGTACTCCTGATCTCTCCACTTCTTCTGCTAGCTCCTCTCTCTA
CTTGATCGACAAATGCTGCTTGACCAAAGCAGAGATCATCCCCGGGTCGA
CGCCCGTTACCGTGCCCACTGCCATTTTATCTTTGACTAGCAAAAATAAG
GGGGTACACCCATTTGTCAGGGGACTATCTCCTCCACCACTGCCGCCGTC
CGCAACATGTCCCAAAGCTTGCTTGGCGGCGGCGGAGGGAAACAAGCTTG
TCAGTTTGGCATAGAAAGTGGGGCGACTCGCACTGAGGAATTTCACGCGG
TTTTCCGTCTCAGCCCGCAATGTCTTGAAAAAGGGCTCCATCACGTCGGT
ACAAGATCCACTCCATTCTTGGTGGACATCAATGACTATGTTTTGGCGGG
GGGTGAATACTCGTGGGAGGCGTGGCGGCATAATTTGGCATTATTAATAC
ACTCACCAAGAAGTCGCTCGTCGGACAATGCGGCGTCCCAATCTTTTATG
GGCGTAATGAGTGCGTCTCGCGCGGCCATCTTGCCTATCT
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Coding sequence (CDS) from alignment at scaffold_10:105617..106856+

>mRNA_4249 ID=mRNA_4249|Name=jgi.p|Nanoce1779_2|588502|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_10:105617..106856+ (Nannochloropsis oceanica)
ATGGAGAAAAAGAAGAAGGAGGAGAAGAAGAAGACGGCTAGTGGTGGGGG
TAAGAAGGGCAAGAAGTGTAAGGCGGGGTCATCGGAGGACGAGTCGTCCG
AAGACGAGGGGCTCCCACCGCTCGAAGCGAACCCCAACAGAAGAATGACG
GGAGTCGAGGTTGCGCGGAATCTGGACCAAGCAATTGACTTGCTGGGCAG
TGGTGGTGGGGCTGCGGGAGGGGACTCTCATCCTGAGAAACGACAGAAAG
CTGCGCACAAGGCATTCGAGGAGAGGATGCTGGTGGAGCTGAAGGAGTCT
ATGCCGGGCATGCGCATGTCGCAATACAAGGACCGAATCTTTGAGATGTG
GAAAAAGAGCCCCGAGAATCCTGTGGTGGCCGCACGGGCGGCGGCTTTGG
ATCTAGGAGGTGGCAAAAAGGGTTGA
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Synonyms
Publications