jgi.p|Nanoce1779_2|588497, mRNA_4248 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588497
Unique NamemRNA_4248
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length509
Alignment locationscaffold_10:105133..105641 -

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Properties
Property NameValue
TranscriptId588583
TrackFilteredModels2
ProteinId588497
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:105133..105641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588497gene_4248Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588497mRNA_4248-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4248CDS_4248Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4248 ID=mRNA_4248|Name=jgi.p|Nanoce1779_2|588497|organism=Nannochloropsis oceanica|type=mRNA|length=509bp
TCCTTCTTCTTTTTCTCCATTTCCATCGCCCTCAATTGAGCTTCCAACTC
CTTCAATTCATTGTTCTTGGCGGCTTGTTTCCCATTCGGAACCTTCTTTG
GCTTGGCTTTGATGGAGGCTGCCAGCGCAGCTTCTTCATTTTCCAATGCC
GCTTTCTCTGCCCTCTTCGCGTCTCTTTCCTGTGCCTTCTTTTCTTGCTC
TTCTCGCCGCTTGGCACTTTTAAGGTCGGCGCCTTCATTCCATGCCGAAG
CTTCTTGCGCCTCCATTTGGGCCTGCTTGACTGCGGCTTTTTCACTTGCA
CTGGCTGCCTTCTTCTCCAAGGCTGCTGCCTTTTTAGTATGCACGCTCTT
AGGAGGCATAGCTGGCCGACGAGGTCGATATGCTGTGGGCTGCGGCGTGC
CTAAAGGCCTATGGATTGTGCGGGATGTAGTAGAGCATTATGCAGGGCGA
GAAAAGAAATAAGAAAATTAAATCGGAAGAAGCTGCCTTGCGGCGATCAT
TATTATTGA
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protein sequence of jgi.p|Nanoce1779_2|588497

>mRNA_4248-protein ID=mRNA_4248-protein|Name=jgi.p|Nanoce1779_2|588497|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MEAASAASSFSNAAFSALFASLSCAFFSCSSRRLALLRSAPSFHAEASCA
SIWACLTAAFSLALAAFFSKAAAFLVCTLLGGIAGRRGRYAVGCGVPKGL
WIVRDVVEHYAGREKK*
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mRNA from alignment at scaffold_10:105133..105641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4248 ID=mRNA_4248|Name=jgi.p|Nanoce1779_2|588497|organism=Nannochloropsis oceanica|type=mRNA|length=509bp|location=Sequence derived from alignment at scaffold_10:105133..105641- (Nannochloropsis oceanica)
TCCTTCTTCTTTTTCTCCATTTCCATCGCCCTCAATTGAGCTTCCAACTC
CTTCAATTCATTGTTCTTGGCGGCTTGTTTCCCATTCGGAACCTTCTTTG
GCTTGGCTTTGATGGAGGCTGCCAGCGCAGCTTCTTCATTTTCCAATGCC
GCTTTCTCTGCCCTCTTCGCGTCTCTTTCCTGTGCCTTCTTTTCTTGCTC
TTCTCGCCGCTTGGCACTTTTAAGGTCGGCGCCTTCATTCCATGCCGAAG
CTTCTTGCGCCTCCATTTGGGCCTGCTTGACTGCGGCTTTTTCACTTGCA
CTGGCTGCCTTCTTCTCCAAGGCTGCTGCCTTTTTAGTATGCACGCTCTT
AGGAGGCATAGCTGGCCGACGAGGTCGATATGCTGTGGGCTGCGGCGTGC
CTAAAGGCCTATGGATTGTGCGGGATGTAGTAGAGCATTATGCAGGGCGA
GAAAAGAAATAAGAAAATTAAATCGGAAGAAGCTGCCTTGCGGCGATCAT
TATTATTGA
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Coding sequence (CDS) from alignment at scaffold_10:105133..105641-

>mRNA_4248 ID=mRNA_4248|Name=jgi.p|Nanoce1779_2|588497|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_10:105133..105641- (Nannochloropsis oceanica)
ATGGAGGCTGCCAGCGCAGCTTCTTCATTTTCCAATGCCGCTTTCTCTGC
CCTCTTCGCGTCTCTTTCCTGTGCCTTCTTTTCTTGCTCTTCTCGCCGCT
TGGCACTTTTAAGGTCGGCGCCTTCATTCCATGCCGAAGCTTCTTGCGCC
TCCATTTGGGCCTGCTTGACTGCGGCTTTTTCACTTGCACTGGCTGCCTT
CTTCTCCAAGGCTGCTGCCTTTTTAGTATGCACGCTCTTAGGAGGCATAG
CTGGCCGACGAGGTCGATATGCTGTGGGCTGCGGCGTGCCTAAAGGCCTA
TGGATTGTGCGGGATGTAGTAGAGCATTATGCAGGGCGAGAAAAGAAATA
A
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Synonyms
Publications