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Properties
| Property Name | Value |
|---|
| TranscriptId | 588582 |
| Track | FilteredModels2 |
| ProteinId | 588496 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:103789..105157 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4247 ID=mRNA_4247|Name=jgi.p|Nanoce1779_2|588496|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
GCCTTGCGGCGATCATTATTATTGATCATCGTGTGAGACGAGATACTCTC
GGTCCAAATGCCTTGGACACCAGCTGCTATGTAACCCTTTTGACAACTAC
ACAGTCACGTCCTACACTCCTTCTATCCCTGCAGAACCATCGTCGCGCCT
CGTCGTCTTGTCGCCTTGTCAACCCCCAGCACCCACCATCATCATCATGC
TTCAACGGGCAGGTAAACTTGCGGTGGGAGCCCTCCTGCTTCTCGTCTGC
GTCGTCTTGTCCACGCAAGCCTTTGTCTTACCCAGCTGTAGCCGCTTCAT
CACCAGCAGTCGAAGCACCCGAAGATTGTCCAAGGCTAGGGACGGGGTCA
AGATGATGCTGCTTCCGCCCGAAGCGCCCCAGTCGTTCCTCTCCTCCTCT
GCAGGCCTCATGGTTGCTGTGTCCCGTTTCGTGAAGGACGTGCCTTCCAC
GCTAACAGACATGGCGGACGGGGCCGCTGATGCCGTTGGAGCTACTGCCA
CGGGCACCAACGCTGATGGCTCCTACACGAATGCGGGAGAAGCAGTCGAG
GAGATCTACAATGCGGGCAACCCCGACTTGCCCCCTCCTTATTACGCCGT
GGCCTTTGCGTTGGTCCTATTGGTGGTCTCGGGTATTCAGCAATTGTCTT
TAGGCAATGTTTTTGACGAGGAGGAGAAATCTGCCTCGTCTAGTGGCGCG
GTGGCTCGTCGGATGGCCCTGCGAAATCGTAGTTTTTTCAAGGGGGGGAA
GAAGAAGTAGAGAGGGCATGAGAATTGAGAGCTGAGAGGGGTGTACAGAT
GGGAGGAAGACAGACAGGAGGTTAATTGGAGGGCGTGGTCGAAAGAATCA
AGAGAAGACGAGAATTTACGAAGCGTTTCCAAGAAGGCAAAGAAGGAAAC
AACCAAATGTCAGAA back to topprotein sequence of jgi.p|Nanoce1779_2|588496 >mRNA_4247-protein ID=mRNA_4247-protein|Name=jgi.p|Nanoce1779_2|588496|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MLQRAGKLAVGALLLLVCVVLSTQAFVLPSCSRFITSSRSTRRLSKARDG
VKMMLLPPEAPQSFLSSSAGLMVAVSRFVKDVPSTLTDMADGAADAVGAT
ATGTNADGSYTNAGEAVEEIYNAGNPDLPPPYYAVAFALVLLVVSGIQQL
SLGNVFDEEEKSASSSGAVARRMALRNRSFFKGGKKK* back to topmRNA from alignment at scaffold_10:103789..105157- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4247 ID=mRNA_4247|Name=jgi.p|Nanoce1779_2|588496|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at scaffold_10:103789..105157- (Nannochloropsis oceanica)
GCCTTGCGGCGATCATTATTATTGATCATCGTGTGAGACGAGATACTCTC
GGTCCAAATGCCTTGGACACCAGCTGCTATGTAACCCTTTTGACAACTAC
ACAGTCACGTCCTACACTCCTTCTATCCCTGCAGAACCATCGTCGCGCCT
CGTCGTCTTGTCGCCTTGTCAACCCCCAGCACCCACCATCATCATCATGC
TTCAACGGGCAGGTAAACTTGCGGTGGGAGCCCTCCTGCTTCTCGTCTGC
GTCGTCTTGTCCACGCAAGCCTTTGTCTTACCCAGCTGTAGCCGCTTCAT
CACCAGCAGTCGAAGCACCCGAAGATTGTCCAAGGCTAGGGACGGGGTCA
AGATGATGCTGCTTCCGCCCGAAGCGCCCCAGTCGTTCCTCTCCTCCTCT
GCAGGCCTCATGGTATGTGTATAATTTGCGTTCGTGGTGTGGAGGGGAGA
GGATGTGAAGTGAAGGCTCAGATAAGCAACGCAGGTTTGTTGTATTGAGA
ATGCTGGTTTGCTTGCTGTTTTTATGGTCATTCGCATCCGCCCGCACAGA
GGAAGGGTGGAAGACACCACGCTCGAAAAGGACGGCAGATTAGCACCCCT
CCAACAGTGTCATTATCGTTGGTCTGCTACGATGGTATTCACAGTCCCTC
ATTCCGACCCCTCTTCTATACCTATCTGCCTTTCTTGTACAGGTTGCTGT
GTCCCGTTTCGTGAAGGACGTGCCTTCCACGCTAACAGACATGGCGGACG
GGGCCGCTGATGCCGTTGGAGCTACTGCCACGGGCACCAACGCTGATGGC
TCCTACACGAATGCGGGAGAAGCAGTCGAGGTATGTGCATTACCTGGCCT
TCGGTGCGGTTTGTGGCTCTTCTCCTGTCCTGTAATGTGCTGGCGTTGAC
ATAGGCATGTGCTTACGCCTCAGCCTTCACATATTCTCTGCCCTCCTCAT
CTTTTTTCACTTACACATGTCTATTGAACGTATATTACTACTGCACATAT
ACAGGAGATCTACAATGCGGGCAACCCCGACTTGCCCCCTCCTTATTACG
CCGTGGCCTTTGCGTTGGTCCTATTGGTGGTCTCGGGTATTCAGCAATTG
TCTTTAGGCAATGTTTTTGACGAGGAGGAGAAATCTGCCTCGTCTAGTGG
CGCGGTGGCTCGTCGGATGGCCCTGCGAAATCGTAGTTTTTTCAAGGGGG
GGAAGAAGAAGTAGAGAGGGCATGAGAATTGAGAGCTGAGAGGGGTGTAC
AGATGGGAGGAAGACAGACAGGAGGTTAATTGGAGGGCGTGGTCGAAAGA
ATCAAGAGAAGACGAGAATTTACGAAGCGTTTCCAAGAAGGCAAAGAAGG
AAACAACCAAATGTCAGAA back to topCoding sequence (CDS) from alignment at scaffold_10:103789..105157- >mRNA_4247 ID=mRNA_4247|Name=jgi.p|Nanoce1779_2|588496|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_10:103789..105157- (Nannochloropsis oceanica)
GAGATCTACAATGCGGGCAACCCCGACTTGCCCCCTCCTTATTACGCCGT
GGCCTTTGCGTTGGTCCTATTGGTGGTCTCGGGTATTCAGCAATTGTCTT
TAGGCAATGTTTTTGACGAGGAGGAGAAATCTGCCTCGTCTAGTGGCGCG
GTGGCTCGTCGGATGGCCCTGCGAAATCGTAGTTTTTTCAAGGGGGGGAA
GAAGAAGTAGGTTGCTGTGTCCCGTTTCGTGAAGGACGTGCCTTCCACGC
TAACAGACATGGCGGACGGGGCCGCTGATGCCGTTGGAGCTACTGCCACG
GGCACCAACGCTGATGGCTCCTACACGAATGCGGGAGAAGCAGTCGAGAT
GCTTCAACGGGCAGGTAAACTTGCGGTGGGAGCCCTCCTGCTTCTCGTCT
GCGTCGTCTTGTCCACGCAAGCCTTTGTCTTACCCAGCTGTAGCCGCTTC
ATCACCAGCAGTCGAAGCACCCGAAGATTGTCCAAGGCTAGGGACGGGGT
CAAGATGATGCTGCTTCCGCCCGAAGCGCCCCAGTCGTTCCTCTCCTCCT
CTGCAGGCCTCATGGAGATCTACAATGCGGGCAACCCCGACTTGCCCCCT
CCTTATTACGCCGTGGCCTTTGCGTTGGTCCTATTGGTGGTCTCGGGTAT
TCAGCAATTGTCTTTAGGCAATGTTTTTGACGAGGAGGAGAAATCTGCCT
CGTCTAGTGGCGCGGTGGCTCGTCGGATGGCCCTGCGAAATCGTAGTTTT
TTCAAGGGGGGGAAGAAGAAGTAGGTTGCTGTGTCCCGTTTCGTGAAGGA
CGTGCCTTCCACGCTAACAGACATGGCGGACGGGGCCGCTGATGCCGTTG
GAGCTACTGCCACGGGCACCAACGCTGATGGCTCCTACACGAATGCGGGA
GAAGCAGTCGAGATGCTTCAACGGGCAGGTAAACTTGCGGTGGGAGCCCT
CCTGCTTCTCGTCTGCGTCGTCTTGTCCACGCAAGCCTTTGTCTTACCCA
GCTGTAGCCGCTTCATCACCAGCAGTCGAAGCACCCGAAGATTGTCCAAG
GCTAGGGACGGGGTCAAGATGATGCTGCTTCCGCCCGAAGCGCCCCAGTC
GTTCCTCTCCTCCTCTGCAGGCCTCATGGAGATCTACAATGCGGGCAACC
CCGACTTGCCCCCTCCTTATTACGCCGTGGCCTTTGCGTTGGTCCTATTG
GTGGTCTCGGGTATTCAGCAATTGTCTTTAGGCAATGTTTTTGACGAGGA
GGAGAAATCTGCCTCGTCTAGTGGCGCGGTGGCTCGTCGGATGGCCCTGC
GAAATCGTAGTTTTTTCAAGGGGGGGAAGAAGAAGTAGGTTGCTGTGTCC
CGTTTCGTGAAGGACGTGCCTTCCACGCTAACAGACATGGCGGACGGGGC
CGCTGATGCCGTTGGAGCTACTGCCACGGGCACCAACGCTGATGGCTCCT
ACACGAATGCGGGAGAAGCAGTCGAGATGCTTCAACGGGCAGGTAAACTT
GCGGTGGGAGCCCTCCTGCTTCTCGTCTGCGTCGTCTTGTCCACGCAAGC
CTTTGTCTTACCCAGCTGTAGCCGCTTCATCACCAGCAGTCGAAGCACCC
GAAGATTGTCCAAGGCTAGGGACGGGGTCAAGATGATGCTGCTTCCGCCC
GAAGCGCCCCAGTCGTTCCTCTCCTCCTCTGCAGGCCTCATG back to top
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