jgi.p|Nanoce1779_2|18833, mRNA_4244 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|18833
Unique NamemRNA_4244
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1030
Alignment locationscaffold_10:96431..97736 -

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Properties
Property NameValue
TranscriptId18919
TrackFilteredModels2
ProteinId18833
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:96431..97736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|18833gene_4244Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|18833mRNA_4244-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4244CDS_4244Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4244 ID=mRNA_4244|Name=jgi.p|Nanoce1779_2|18833|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp
ATCTGACACCAACGCACCACTCCGTTCTCATAGGCAAGCAGGCACCTGGA
TTTTCACCACACGCATCCCAGCCATTTGCAGCTCTGCCTTCGCACACCAC
AGCCGACAACAGTCGTCCTGAACTTTTGAACTCTCTTGTCTTTCAGAACA
TTGCCCGACCCTTCGAACTTGAGAAAGGTAGAGAAAGCACCCCATTTACA
CCACTACTACCACGACGAATATGGCAACTCTCAGCACCCGGGCCACTGGC
ACCAGCATCCCCATTTCTGCCACCTACGTCTCGGTCCGTCGCTCTTCCCT
CTTGTTCCTCACCCTCGGGTCATTTGCCATGGGGACAGTCCTCGCCAACA
TGGGCACGCGATCTTGGCGGCGTATTCAACGCTACATGGAGTCACGTCGT
AGTAACGGGGGGCGACGACCCGTGATTGTCTGCTTTGGAGACAGTATCAC
GCAAGGGGGACACAGCCCAGAATATGTCGGGTGGATGGGGCGTTTGGAAG
ACTTCTATGGTAGAAAAGCAGATGTGCTTAATCGTGGCTTTTCTGGATAC
AACACTGATTGGCTCTGCCGGATGTTGAATGATTTGTTTTTGCGATTATT
TAGACGGCGACCACCGGCCTTGGTGACGATCTGGGTGGGTGCGAATGACG
CGACAGTTGAGAGCTCGACGCAGCACGTGCCCTTGTGGAAGTTTAAGCAG
AATTTGGAGAAAATGATTGGCTCGCCTCGCTGCGTTCCTCCACTCCCTCC
GCCCTTCCTGACCGCTCATTCGCCCGCACCTATGCATATGCCCAAGCCGT
CAAAGAAGTAGGACAAACGCTGAGAACACCCGTCGTGGATATGCACGCGG
CTCTTGAAGGAGGGCAAGACGAGGACAGGGGGGAGGAGGGGGTGCCCCCT
CCGGGCGAAGCTTACAGAGGCTACCTTTCTGATGGTCTCCATTTGAATTT
CAAGGGAAACAAAAAGGCCTTCGAGGCCATAATAGAGGGCATCAAGAATA
ATTTCCCTTGGCTCGATCCGATTAATCTGG
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protein sequence of jgi.p|Nanoce1779_2|18833

>mRNA_4244-protein ID=mRNA_4244-protein|Name=jgi.p|Nanoce1779_2|18833|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MATLSTRATGTSIPISATYVSVRRSSLLFLTLGSFAMGTVLANMGTRSWR
RIQRYMESRRSNGGRRPVIVCFGDSITQGGHSPEYVGWMGRLEDFYGRKA
DVLNRGFSGYNTDWLCRMLNDLFLRLFRRRPPALVTIWVGANDATVESST
QHVPLWKFKQNLEKMIGSPRCVPPLPPPFLTAHSPAPMHMPKPSKK*
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mRNA from alignment at scaffold_10:96431..97736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4244 ID=mRNA_4244|Name=jgi.p|Nanoce1779_2|18833|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp|location=Sequence derived from alignment at scaffold_10:96431..97736- (Nannochloropsis oceanica)
ATCTGACACCAACGCACCACTCCGTTCTCATAGGCAAGCAGGCACCTGGA
TTTTCACCACACGCATCCCAGCCATTTGCAGCTCTGCCTTCGCACACCAC
AGCCGACAACAGTCGTCCTGAACTTTTGAACTCTCTTGTCTTTCAGAACA
TTGCCCGACCCTTCGAACTTGAGAAAGGTAGAGAAAGCACCCCATTTACA
CCACTACTACCACGACGAATATGGCAACTCTCAGCACCCGGGCCACTGGC
ACCAGCATCCCCATTTCTGCCACCTACGTCTCGGTCCGTCGCTCTTCCCT
CTTGTTCCTCACCCTCGGGTCATTTGCCATGGGGACAGTCCTCGCCAACA
TGGGCACGCGATCTTGGCGGCGTATTCAACGCTACATGGAGTCACGTCGT
AGTAACGGGGGGCGACGACCCGTGATTGTCTGCTTTGGAGACAGTATCAC
GCAAGGGGGACACAGCCCAGAATATGTCGGGTGGATGGGGCGTTTGGAAG
ACTTCTATGGTAGAAAAGCAGATGTGCTTAATCGTGGCTTTTCTGGATAC
AACACTGATTGGCTCTGCCGGATGTTGAATGATTTGTTTTTGCGATTATT
TAGACGGCGACCACCGGCCTTGGTGACGATCTGGGTGGGTGCGAATGACG
CGACAGTTGAGAGCTCGACGCAGCACGTGCCCTTGTGGAAGTTTAAGCAG
AATTTGGAGAAAATGGTCCGTTTTTTCCGAAGGCTAGGACGCAGGGATCG
AAAGGTAAAGAGAGAGGGAGGGAGATACGGAGCGTGGAACATCATTAGTT
TCTACCTTTCTGGCAAAAACGAAGAGAATCTCCCAGTCCTCCTGGGCCTG
TAATCATGTGTCATTCACCTACTTACCCGCCCCGTCTTCCTCTTCCCCTC
CTTCTCTCCATCCTTCTCCATCTCTCTCCTTCATTTCCCCCCCACAGGTG
GCCGTTCTCCTCATTACCCCCCCCTCCCCTCCACGAAGCAGATTGGCTCG
CCTCGCTGCGTTCCTCCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCC
CGCACCTATGCATATGCCCAAGCCGTCAAAGAAGTAGGACAAACGCTGAG
AACACCCGTCGTGGATATGCACGCGGCTCTTGAAGGAGGGCAAGACGAGG
ACAGGGGGGAGGAGGGGGTGCCCCCTCCGGGCGAAGCTTACAGAGGCTAC
CTTTCTGATGGTCTCCATTTGAATTTCAAGGGAAACAAAAAGGCCTTCGA
GGCCATAATAGAGGGCATCAAGAATAATTTCCCTTGGCTCGATCCGATTA
ATCTGG
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Coding sequence (CDS) from alignment at scaffold_10:96431..97736-

>mRNA_4244 ID=mRNA_4244|Name=jgi.p|Nanoce1779_2|18833|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_10:96431..97736- (Nannochloropsis oceanica)
ATTGGCTCGCCTCGCTGCGTTCCTCCACTCCCTCCGCCCTTCCTGACCGC
TCATTCGCCCGCACCTATGCATATGCCCAAGCCGTCAAAGAAGTAGATGG
CAACTCTCAGCACCCGGGCCACTGGCACCAGCATCCCCATTTCTGCCACC
TACGTCTCGGTCCGTCGCTCTTCCCTCTTGTTCCTCACCCTCGGGTCATT
TGCCATGGGGACAGTCCTCGCCAACATGGGCACGCGATCTTGGCGGCGTA
TTCAACGCTACATGGAGTCACGTCGTAGTAACGGGGGGCGACGACCCGTG
ATTGTCTGCTTTGGAGACAGTATCACGCAAGGGGGACACAGCCCAGAATA
TGTCGGGTGGATGGGGCGTTTGGAAGACTTCTATGGTAGAAAAGCAGATG
TGCTTAATCGTGGCTTTTCTGGATACAACACTGATTGGCTCTGCCGGATG
TTGAATGATTTGTTTTTGCGATTATTTAGACGGCGACCACCGGCCTTGGT
GACGATCTGGGTGGGTGCGAATGACGCGACAGTTGAGAGCTCGACGCAGC
ACGTGCCCTTGTGGAAGTTTAAGCAGAATTTGGAGAAAATGATTGGCTCG
CCTCGCTGCGTTCCTCCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCC
CGCACCTATGCATATGCCCAAGCCGTCAAAGAAGTAGATGGCAACTCTCA
GCACCCGGGCCACTGGCACCAGCATCCCCATTTCTGCCACCTACGTCTCG
GTCCGTCGCTCTTCCCTCTTGTTCCTCACCCTCGGGTCATTTGCCATGGG
GACAGTCCTCGCCAACATGGGCACGCGATCTTGGCGGCGTATTCAACGCT
ACATGGAGTCACGTCGTAGTAACGGGGGGCGACGACCCGTGATTGTCTGC
TTTGGAGACAGTATCACGCAAGGGGGACACAGCCCAGAATATGTCGGGTG
GATGGGGCGTTTGGAAGACTTCTATGGTAGAAAAGCAGATGTGCTTAATC
GTGGCTTTTCTGGATACAACACTGATTGGCTCTGCCGGATGTTGAATGAT
TTGTTTTTGCGATTATTTAGACGGCGACCACCGGCCTTGGTGACGATCTG
GGTGGGTGCGAATGACGCGACAGTTGAGAGCTCGACGCAGCACGTGCCCT
TGTGGAAGTTTAAGCAGAATTTGGAGAAAATG
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Synonyms
Publications