jgi.p|Nanoce1779_2|588479, mRNA_4241 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588479
Unique Name	mRNA_4241
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2567
Alignment location	scaffold_10:94326..97705 +

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Properties


Property Name	Value
TranscriptId	588565
Track	FilteredModels2
ProteinId	588479

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:94326..97705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588479	gene_4241	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588479	mRNA_4241-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4241	CDS_4241	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:94326..97705+
coding sequence from alignment at scaffold_10:94326..97705+

mRNA sequence

>mRNA_4241 ID=mRNA_4241|Name=jgi.p|Nanoce1779_2|588479|organism=Nannochloropsis oceanica|type=mRNA|length=2567bp
AGCGGAACCCTTGCATCTCTGCACCACCTACCCACACGTAAGCCCCGCGC
CGCGCGACAGACGCCTGTACAATGATGGAATCGGATGGAGATCCAAGCTT
TGTGGAGCAGGTGGCAGTGTCCCTGCGAAGAAAATGGCAACACATCCTGG
ATCGCTCCACCGTGTACGTCGGCCTTCGTTGGGTTATCTTTGTTGTCATG
CTCGGCCTATACGCCTTACGTGTATTCTACATTAATGGCTGGTTCATTGT
GACCTACGGCTTGGGTATCTACCTCCTGAACAACTTTATCGGATTCCTTT
CCCCGCAGATGGACCCAGAATCAGAAGGTCCCTTACTACCAACGAATGAG
AGGGAAGAATATCGACCGTTTGCCCGACGGTTGCCGGAATTTAAATTTTG
GTACCAATGCGCGAAGGCGACATGGGTGGCATTTGGAATGACGTTTTTTG
ATTTTTTTGACGTGCCGGTTTATTGGCCGATTCTCTTGTTGTACTTTATA
AGTCTGTTTGTATTGACGATGAAGAGACAGATTCGGCATATGATCAAACA
TCGGTACGTGCCGTGGAGTAACGGCAAGGCCAAGTATGCGGGAGGGGGAG
AGAAGCGGATGGCAGCGAAGTAAGTGCGGATAGCGTGGGAGGTGGTGAGG
CGTTAGACATAGAAAGAGAAAGGGAGACGATGGTGGACATGGCGCTGGAG
GTTTGAGACTTACTCTCTCTTTCCCTCCTGAACATGTGTGTGTGTACGCG
CGCGCGTGCGTGTATGTACGATAGATTCAAAACCAGAAAAAATGTTTTGT
TGGGCGTTATGGTTTGCTCCCTGGACAAATGAAACAGAAAGGGAAGCAGT
CGATCCTCCCCTTTGCTCTGTTGGCTCCTTGACAACAGACAGCGGTAACA
CGTTCGCGAGAAGGATGATAGAAAATCCGCCCATGCTTTGGACAAAAGAG
CGACAGGTTAACCGACTCCAGGCGTTCAAAAGCCAACGGAAGGATGTTGA
GAGAAATAAGGAAGGGAAATGATGGAGGGAGAAGTCGAGGGAGCAGGGCC
ACAGACGGAAAAACAAGAAACGTCTCGACGCTTCCCGGCGAGACGTTTCT
GCGGCCGATGCCATGGGAGGGGGGGAGGGAGGGGGAAGGCCATTACCTAG
GCCGTTCCCCTTCATCATCCTTCCCACGAAGGACCAACCACATGACAACA
CCATCGATACACGCAATAAGTCAACAAGCAAACATGGCTGCGACCGACAA
ACACCCGCACCTTGCATTATCTTCCATACCCATACCACGATTTTTTTTTC
TTCCCCCCTCCCTCCTTCAGTGTCCCTCCATCCTTTCTCCCTCCCTACTT
TCTAATCCGAATTCAAGATGATGCTACTCTTGGAGCTATACAAGGTTATA
GCGCACTCCCCCCCTCCCTCGACCCCGCCCTCCGCTTCATCCAAATAAGC
TGACCTCAACGTCTCCCATGCTGGCCCCTGCATCTCCAGATTAATCGGAT
CGAGCCAAGGGAAATTATTCTTGATGCCCTCTATTATGGCCTCGAAGGCC
TTTTTGTTTCCCTTGAAATTCAAATGGAGACCATCAGAAAGGTAGCCTCT
GTAAGCTTCGCCCGGAGGGGGCACCCCCTCCTCCCCCCTGTCCTCGTCTT
GCCCTCCTTCAAGAGCCGCGTGCATATCCACGACGGGTGTTCTCAGCGTT
TGTCCTACTTCTTTGACGGCTTGGGCATATGCATAGGTGCGGGCGAATGA
GCGGTCAGGAAGGGCGGAGGGAGTGGAGGAACGCAGCGAGGCGAGCCAAT
CTGCTTCGTGGAGGGGAGGGGGGGGTAATGAGGAGAACGGCCACCTTTCG
ATCCCTGCGTCCTAGCCTTCGGAAAAAACGGACCATTTTCTCCAAATTCT
GCTTAAACTTCCACAAGGGCACGTGCTGCGTCGAGCTCTCAACTGTCGCG
TCATTCGCACCCACCCAGATCGTCACCAAGGCCGGTGGTCGCCGTCTAAA
TAATCGCAAAAACAAATCATTCAACATCCGGCAGAGCCAATCAGTGTTGT
ATCCAGAAAAGCCACGATTAAGCACATCTGCTTTTCTACCATAGAAGTCT
TCCAAACGCCCCATCCACCCGACATATTCTGGGCTGTGTCCCCCTTGCGT
GATACTGTCTCCAAAGCAGACAATCACGGGTCGTCGCCCCCCGTTACTAC
GACGTGACTCCATGTAGCGTTGAATACGCCGCCAAGATCGCGTGCCCATG
TTGGCGAGGACTGTCCCCATGGCAAATGACCCGAGGGTGAGGAACAAGAG
GGAAGAGCGACGGACCGAGACGTAGGTGGCAGAAATGGGGATGCTGGTGC
CAGTGGCCCGGGTGCTGAGAGTTGCCATATTCGTCGTGGTAGTAGTGGTG
TAAATGGGGTGCTTTCTCTACCTTTCTCAAGTTCGAAGGGTCGGGCAATG
TTCTGAAAGACAAGAGAGTTCAAAAGTTCAGGACGACTGTTGTCGGCTGT
GGTGTGCGAAGGCAGAGCTGCAAATGGCTGGGATGCGTGTGGTGAAAATC
CAGGTGCCTGCTTGCCT

protein sequence of jgi.p|Nanoce1779_2|588479

>mRNA_4241-protein ID=mRNA_4241-protein|Name=jgi.p|Nanoce1779_2|588479|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MMESDGDPSFVEQVAVSLRRKWQHILDRSTVYVGLRWVIFVVMLGLYALR
VFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTNEREEYRPF
ARRLPEFKFWYQCAKATWVAFGMTFFDFFDVPVYWPILLLYFISLFVLTM
KRQIRHMIKHRYVPWSNGKAKYAGGGEKRMAAK*

mRNA from alignment at scaffold_10:94326..97705+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4241 ID=mRNA_4241|Name=jgi.p|Nanoce1779_2|588479|organism=Nannochloropsis oceanica|type=mRNA|length=3380bp|location=Sequence derived from alignment at scaffold_10:94326..97705+ (Nannochloropsis oceanica)
AGCGGAACCCTTGCATCTCTGCACCACCTACCCACACGTAAGCCCCGCGC
CGCGCGACAGACGCCTGTACAATGATGGAATCGGATGGAGATCCAAGCTT
TGTGGAGCAGGTGGCAGTGTCCCTGCGAAGGTACGTGCTTTATTTACTCT
AGGTCTTGTGTATGGGTGGGTGGACTGCGTGGGTGGGTCATGTGGCGGGT
GGTGTACGGGTGAATGTGTGTCTGGTGCTTGAAAAGCCTCGCTGCTCATC
ATTGTCGCTATCTGGATATGGTGTAATGGCGTTAGGAAATGCGTGGGTGA
GAAGATGCTCGATGGATTGATGGCATGTGTGAGAGGGAGAGTTACTAAGT
CTCTTCCCGCTTTACCCACCATGCTCTCGGTGAAACGTTGTGCAATGCAT
GTTTACCTTTGAGATATGCTCGTAAGAGTATGTGTGCATATTCCCGTGCG
TTTGATGCGATGATTTCTCTTGTCGGTAGATAGGGCTGTGCATCATTGAC
ATCTTGACGGACGGAACCATCAACCATTGATCACCGGATGCGCTTTCACC
ACCCCATCACCAACCCACTCTCGCCCTTCCAACCTATCTTCAGTCTAACA
ATGACCATACACAGTTTGAAAATTTCACCACACACCATGTCAGCCCTTGG
ATGATCCTCTTGGTGGTCGTGCTCACTATGTTCACAGCGCCTTTCGCGAG
TTCAAAAATTGTTTAACAAAACCCCAATTTTTCCCCTCACGCGAACACAG
AAAATGGCAACACATCCTGGATCGCTCCACCGTGTACGTCGGCCTTCGTT
GGGTTATCTTTGTTGTCATGCTCGGCCTATACGCCTTACGTGTATTCTAC
ATTAATGGCTGGTTCATTGTGACCTACGGCTTGGGTATCTACCTCCTGAA
CAACTTTATCGGATTCCTTTCCCCGCAGATGGACCCAGAATCAGAAGGTC
CCTTACTACCAACGAATGAGAGGGAAGAATATCGACCGTTTGCCCGACGG
TTGCCGGAATTTAAATTTTGGTACCAATGCGCGAAGGCGACATGGGTGGC
ATTTGGAATGACGTTTTTTGATTTTTTTGACGTGCCGGTTTATTGGCCGA
TTCTCTTGTTGTACTTTATAAGTCTGTTTGTATTGACGATGAAGAGACAG
ATTCGGCATATGATCAAACATCGGTACGTGCCGTGGAGTAACGGCAAGGC
CAAGTATGCGGGAGGGGGAGAGAAGCGGATGGCAGCGAAGTAAGTGCGGA
TAGCGTGGGAGGTGGTGAGGCGTTAGACATAGAAAGAGAAAGGGAGACGA
TGGTGGACATGGCGCTGGAGGTTTGAGACTTACTCTCTCTTTCCCTCCTG
AACATGTGTGTGTGTACGCGCGCGCGTGCGTGTATGTACGATAGATTCAA
AACCAGAAAAAATGTTTTGTTGGGCGTTATGGTTTGCTCCCTGGACAAAT
GAAACAGAAAGGGAAGCAGTCGATCCTCCCCTTTGCTCTGTTGGCTCCTT
GACAACAGACAGCGGTAACACGTTCGCGAGAAGGATGATAGAAAATCCGC
CCATGCTTTGGACAAAAGAGCGACAGGTTAACCGACTCCAGGCGTTCAAA
AGCCAACGGAAGGATGTTGAGAGAAATAAGGAAGGGAAATGATGGAGGGA
GAAGTCGAGGGAGCAGGGCCACAGACGGAAAAACAAGAAACGTCTCGACG
CTTCCCGGCGAGACGTTTCTGCGGCCGATGCCATGGGAGGGGGGGAGGGA
GGGGGAAGGCCATTACCTAGGCCGTTCCCCTTCATCATCCTTCCCACGAA
GGACCAACCACATGACAACACCATCGATACACGCAATAAGTCAACAAGCA
AACATGGCTGCGACCGACAAACACCCGCACCTTGCATTATCTTCCATACC
CATACCACGATTTTTTTTTCTTCCCCCCTCCCTCCTTCAGTGTCCCTCCA
TCCTTTCTCCCTCCCTACTTTCTAATCCGAATTCAAGATGATGCTACTCT
TGGAGCTATACAAGGTTATAGCGCACTCCCCCCCTCCCTCGACCCCGCCC
TCCGCTTCATCCAAATAAGCTGACCTCAACGTCTCCCATGCTGGCCCCTG
CATCTCCAGATTAATCGGATCGAGCCAAGGGAAATTATTCTTGATGCCCT
CTATTATGGCCTCGAAGGCCTTTTTGTTTCCCTTGAAATTCAAATGGAGA
CCATCAGAAAGGTAGCCTCTGTAAGCTTCGCCCGGAGGGGGCACCCCCTC
CTCCCCCCTGTCCTCGTCTTGCCCTCCTTCAAGAGCCGCGTGCATATCCA
CGACGGGTGTTCTCAGCGTTTGTCCTACTTCTTTGACGGCTTGGGCATAT
GCATAGGTGCGGGCGAATGAGCGGTCAGGAAGGGCGGAGGGAGTGGAGGA
ACGCAGCGAGGCGAGCCAATCTGCTTCGTGGAGGGGAGGGGGGGGTAATG
AGGAGAACGGCCACCTGTGGGGGGGAAATGAAGGAGAGAGATGGAGAAGG
ATGGAGAGAAGGAGGGGAAGAGGAAGACGGGGCGGGTAAGTAGGTGAATG
ACACATGATTACAGGCCCAGGAGGACTGGGAGATTCTCTTCGTTTTTGCC
AGAAAGGTAGAAACTAATGATGTTCCACGCTCCGTATCTCCCTCCCTCTC
TCTTTACCTTTCGATCCCTGCGTCCTAGCCTTCGGAAAAAACGGACCATT
TTCTCCAAATTCTGCTTAAACTTCCACAAGGGCACGTGCTGCGTCGAGCT
CTCAACTGTCGCGTCATTCGCACCCACCCAGATCGTCACCAAGGCCGGTG
GTCGCCGTCTAAATAATCGCAAAAACAAATCATTCAACATCCGGCAGAGC
CAATCAGTGTTGTATCCAGAAAAGCCACGATTAAGCACATCTGCTTTTCT
ACCATAGAAGTCTTCCAAACGCCCCATCCACCCGACATATTCTGGGCTGT
GTCCCCCTTGCGTGATACTGTCTCCAAAGCAGACAATCACGGGTCGTCGC
CCCCCGTTACTACGACGTGACTCCATGTAGCGTTGAATACGCCGCCAAGA
TCGCGTGCCCATGTTGGCGAGGACTGTCCCCATGGCAAATGACCCGAGGG
TGAGGAACAAGAGGGAAGAGCGACGGACCGAGACGTAGGTGGCAGAAATG
GGGATGCTGGTGCCAGTGGCCCGGGTGCTGAGAGTTGCCATATTCGTCGT
GGTAGTAGTGGTGTAAATGGGGTGCTTTCTCTACCTTTCTCAAGTTCGAA
GGGTCGGGCAATGTTCTGAAAGACAAGAGAGTTCAAAAGTTCAGGACGAC
TGTTGTCGGCTGTGGTGTGCGAAGGCAGAGCTGCAAATGGCTGGGATGCG
TGTGGTGAAAATCCAGGTGCCTGCTTGCCT

Coding sequence (CDS) from alignment at scaffold_10:94326..97705+

>mRNA_4241 ID=mRNA_4241|Name=jgi.p|Nanoce1779_2|588479|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_10:94326..97705+ (Nannochloropsis oceanica)
ATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTGTC
CCTGCGAAGAAAATGGCAACACATCCTGGATCGCTCCACCGTGTACGTCG
GCCTTCGTTGGGTTATCTTTGTTGTCATGCTCGGCCTATACGCCTTACGT
GTATTCTACATTAATGGCTGGTTCATTGTGACCTACGGCTTGGGTATCTA
CCTCCTGAACAACTTTATCGGATTCCTTTCCCCGCAGATGGACCCAGAAT
CAGAAGGTCCCTTACTACCAACGAATGAGAGGGAAGAATATCGACCGTTT
GCCCGACGGTTGCCGGAATTTAAATTTTGGTACCAATGCGCGAAGGCGAC
ATGGGTGGCATTTGGAATGACGTTTTTTGATTTTTTTGACGTGCCGGTTT
ATTGGCCGATTCTCTTGTTGTACTTTATAAGTCTGTTTGTATTGACGATG
AAGAGACAGATTCGGCATATGATCAAACATCGGTACGTGCCGTGGAGTAA
CGGCAAGGCCAAGTATGCGGGAGGGGGAGAGAAGCGGATGGCAGCGAAGT
AAATGATGGAATCGGATGGAGATCCAAGCTTTGTGGAGCAGGTGGCAGTG
TCCCTGCGAAGAAAATGGCAACACATCCTGGATCGCTCCACCGTGTACGT
CGGCCTTCGTTGGGTTATCTTTGTTGTCATGCTCGGCCTATACGCCTTAC
GTGTATTCTACATTAATGGCTGGTTCATTGTGACCTACGGCTTGGGTATC
TACCTCCTGAACAACTTTATCGGATTCCTTTCCCCGCAGATGGACCCAGA
ATCAGAAGGTCCCTTACTACCAACGAATGAGAGGGAAGAATATCGACCGT
TTGCCCGACGGTTGCCGGAATTTAAATTTTGGTACCAATGCGCGAAGGCG
ACATGGGTGGCATTTGGAATGACGTTTTTTGATTTTTTTGACGTGCCGGT
TTATTGGCCGATTCTCTTGTTGTACTTTATAAGTCTGTTTGTATTGACGA
TGAAGAGACAGATTCGGCATATGATCAAACATCGGTACGTGCCGTGGAGT
AACGGCAAGGCCAAGTATGCGGGAGGGGGAGAGAAGCGGATGGCAGCGAA
GTAA

Synonyms

Publications