jgi.p|Nanoce1779_2|588472, mRNA_4240 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588472
Unique NamemRNA_4240
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length685
Alignment locationscaffold_10:92842..94042 +

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Properties
Property NameValue
TranscriptId588558
TrackFilteredModels2
ProteinId588472
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:92842..94042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588472gene_4240Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588472mRNA_4240-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4240CDS_4240Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4240 ID=mRNA_4240|Name=jgi.p|Nanoce1779_2|588472|organism=Nannochloropsis oceanica|type=mRNA|length=685bp
TCCCCCCCGCTCTTCCTCCCCCTCTTCTTCTTCCCTCCCTCCTCCCCACC
CTCCTTGCGACCGACCACGTCCAAATTGCCTCGATTCACAAAGAAGCCGG
AGTATTTAGTCAAGACAGACTGAGCCTCGTGCTGTTTCTCAAACACCTCG
TGCAACGCGGAGTCGTCAATGATGTCATCATCCAGATCATAGAGGTCATG
CTTGTGCGCCCGCTTCTTACTTCCTCCTTCCTCCCCCCCCTGGCCACTCC
TCATTCCAGCATGACCACAATACTTCGTTTCCAACATCTTTATAAAGTTT
CCGATCCCCCGTGGATCGTTGAAAGATTCTTCGTCGTCGGAAAGGGGAGA
GGGTTTGTTTTTCTTCTTTTTCTTCTTGCGCGCGTCGTCCCCAGTGCTGT
TGCTGTGGCCCAAGAGCGCGCCTAAAGAGAACTCAGGTTCCTTCAGATCG
GACAAGACTACGCGGACGCGGTGTTTTGATTTGTATTTGCCCATTATGGT
CGTGGGGCTGGGGCTGTACATGTGTGAAAACGTGAATTTATTTGGGAGGA
GAGGGTCCGGCTGAGTGAGGAAGGCAAGTGGCATGTGAAGGGAAGGCGAC
ATGATAAGGGAGCAGTGGTGTTGTAGGCAATTGACAGCCTTATCTTGCCT
GTCCCGGCGCGTGTGTCGCCTGTGGGTGTGCGCTG
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protein sequence of jgi.p|Nanoce1779_2|588472

>mRNA_4240-protein ID=mRNA_4240-protein|Name=jgi.p|Nanoce1779_2|588472|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MLVRPLLTSSFLPPLATPHSSMTTILRFQHLYKVSDPPWIVERFFVVGKG
RGFVFLLFLLARVVPSAVAVAQERA*
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mRNA from alignment at scaffold_10:92842..94042+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4240 ID=mRNA_4240|Name=jgi.p|Nanoce1779_2|588472|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at scaffold_10:92842..94042+ (Nannochloropsis oceanica)
TCCCCCCCGCTCTTCCTCCCCCTCTTCTTCTTCCCTCCCTCCTCCCCACC
CTCCTTGCGACCGACCACGTCCAAATTGCCTCGATTCACAAAGAAGCCGG
AGTATTTAGTCAAGACAGACTGAGCCTCGTGCTGTTTCTCAAACACCTCG
TGCAACGCGGAGTCGTCAATGATGTCATCATCCAGATCATAGAGGTCCTG
GGGGCGGGAGGGAGGGAGGAAAAGAGGGAAGGGGGTAGATTATGGAGGAA
GAAAGAGGTCAGAGATATACTCAATTGCAAGGCATGTTAAGAGAGAAGCC
ATGCTAAAGACCGCCTGAACAAAACAAGAGGCATGCTGCAATCACCCCAC
CCCTCCCCAAACCTACATGCTTGTGCGCCCGCTTCTTACTTCCTCCTTCC
TCCCCCCCCTGGCCACTCCTCATTCCAGCATGACCACAATACTTCGTTTC
CAACATCTTTATAAAGTTTCCGATCCCCCGTGGATCGTTGAAAGATTCTT
CGTCGTCGGAAAGGGGAGAGGGTTTGTTTTTCTTCTTTTTCTTCTTGCTG
CATGAGGAAGACAATGAAGGGTGAAAAGGATAGTGCGGGTAAGGTAATTG
CAAGGAACGTTGCGCGTGTAGGGGAAGTCCAAATGTAACACTTCGCAATC
GTGGTATTTTGGTCGCAGACACCCTCTGTGTCTCGCGATCAAGTGCGAGT
GCCCGTATGCGCATGTACAACGAAAGGAGCAGTAATGTCAAAGGCCTTTT
TCTTCGCCGCGCCCAACATTACGACACCAATTCAAGCTGAAGATAAATGT
GGTTCGTGTATTCTTTTCGACACGTCCATGCATACACTGTCCCCTTCATT
CTTAATTGGCCCCTTCCCTTCCTGCTTTCCTCTCCGGTCCTTACCGCGCG
TCGTCCCCAGTGCTGTTGCTGTGGCCCAAGAGCGCGCCTAAAGAGAACTC
AGGTTCCTTCAGATCGGACAAGACTACGCGGACGCGGTGTTTTGATTTGT
ATTTGCCCATTATGGTCGTGGGGCTGGGGCTGTACATGTGTGAAAACGTG
AATTTATTTGGGAGGAGAGGGTCCGGCTGAGTGAGGAAGGCAAGTGGCAT
GTGAAGGGAAGGCGACATGATAAGGGAGCAGTGGTGTTGTAGGCAATTGA
CAGCCTTATCTTGCCTGTCCCGGCGCGTGTGTCGCCTGTGGGTGTGCGCT
G
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Coding sequence (CDS) from alignment at scaffold_10:92842..94042+

>mRNA_4240 ID=mRNA_4240|Name=jgi.p|Nanoce1779_2|588472|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_10:92842..94042+ (Nannochloropsis oceanica)
ATGCTTGTGCGCCCGCTTCTTACTTCCTCCTTCCTCCCCCCCCTGGCCAC
TCCTCATTCCAGCATGACCACAATACTTCGTTTCCAACATCTTTATAAAG
TTTCCGATCCCCCGTGGATCGTTGAAAGATTCTTCGTCGTCGGAAAGGGG
AGAGGGTTTGTTTTTCTTCTTTTTCTTCTTGCGCGCGTCGTCCCCAGTGC
TGTTGCTGTGGCCCAAGAGCGCGCCTAAATGCTTGTGCGCCCGCTTCTTA
CTTCCTCCTTCCTCCCCCCCCTGGCCACTCCTCATTCCAGCATGACCACA
ATACTTCGTTTCCAACATCTTTATAAAGTTTCCGATCCCCCGTGGATCGT
TGAAAGATTCTTCGTCGTCGGAAAGGGGAGAGGGTTTGTTTTTCTTCTTT
TTCTTCTTGCGCGCGTCGTCCCCAGTGCTGTTGCTGTGGCCCAAGAGCGC
GCCTAA
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Synonyms
Publications