jgi.p|Nanoce1779_2|577285, mRNA_424 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577285
Unique NamemRNA_424
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length648
Alignment locationscaffold_3:1046114..1046761 -

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Properties
Property NameValue
TranscriptId577371
TrackFilteredModels2
ProteinId577285
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1046114..1046761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577285gene_424Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577285mRNA_424-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_424CDS_424Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_424 ID=mRNA_424|Name=jgi.p|Nanoce1779_2|577285|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
ACCTTCCCTCCCTTTCTACCTCCCATCCACGCACTCACACCCACCGACGT
AGGCTCTTCAACTCCGAACAGATCGTCCAAGTCATCCCCCTCTTCGTCTC
CTTCCTCTTCTTCCTCCTTCTCCCCCTCCTCCTCCGCAACAGCCGCTCGA
GAGGCCTTTTCCTCTTCACGTTTCTGCTGGATTTCAGCCAAAGCTTTCCG
AAGCATGTCCAACTCCCGCGGCTGCACCTCCTCCCCTCCTTCACCATCGT
CACCCGCCTTCGACCCCTTTTTCCATCTCCTCCTCCTTCTGTGTCCTCTG
TCTTCCTCTCTATCGTCTTCGTCATCCGCCCCTGTTTCTTCTCCATTTTT
TCCCGAGCTCTTCATCACGGCGGGCACCACGGGCACCTCATCAAGCAAAT
CAAGGGGAAGCACGAACTTGTCCGCCCCCCCCACCAACACCCTCCTCATC
ACCTCTTCCATCGCTCCCTCCATTATGCCCTTTGCCACCGCCTCTTCACC
GGAAAGACCCTTCTTCCTCACCACCCCCACCCCTCCTCCTGCTGCTGCGG
CAGCTGCTGCGGCTGCTGCTGCGGCTGCTTCTCTGTATCTCTTACACTCC
TGTTGAAACTGACTCAAGCACAGCTCTTCAAACAGTCTCAACTCTGGT
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protein sequence of jgi.p|Nanoce1779_2|577285

>mRNA_424-protein ID=mRNA_424-protein|Name=jgi.p|Nanoce1779_2|577285|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSNSRGCTSSPPSPSSPAFDPFFHLLLLLCPLSSSLSSSSSAPVSSPFFP
ELFITAGTTGTSSSKSRGSTNLSAPPTNTLLITSSIAPSIMPFATASSPE
RPFFLTTPTPPPAAAAAAAAAAAAASLYLLHSC*
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mRNA from alignment at scaffold_3:1046114..1046761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_424 ID=mRNA_424|Name=jgi.p|Nanoce1779_2|577285|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at scaffold_3:1046114..1046761- (Nannochloropsis oceanica)
ACCTTCCCTCCCTTTCTACCTCCCATCCACGCACTCACACCCACCGACGT
AGGCTCTTCAACTCCGAACAGATCGTCCAAGTCATCCCCCTCTTCGTCTC
CTTCCTCTTCTTCCTCCTTCTCCCCCTCCTCCTCCGCAACAGCCGCTCGA
GAGGCCTTTTCCTCTTCACGTTTCTGCTGGATTTCAGCCAAAGCTTTCCG
AAGCATGTCCAACTCCCGCGGCTGCACCTCCTCCCCTCCTTCACCATCGT
CACCCGCCTTCGACCCCTTTTTCCATCTCCTCCTCCTTCTGTGTCCTCTG
TCTTCCTCTCTATCGTCTTCGTCATCCGCCCCTGTTTCTTCTCCATTTTT
TCCCGAGCTCTTCATCACGGCGGGCACCACGGGCACCTCATCAAGCAAAT
CAAGGGGAAGCACGAACTTGTCCGCCCCCCCCACCAACACCCTCCTCATC
ACCTCTTCCATCGCTCCCTCCATTATGCCCTTTGCCACCGCCTCTTCACC
GGAAAGACCCTTCTTCCTCACCACCCCCACCCCTCCTCCTGCTGCTGCGG
CAGCTGCTGCGGCTGCTGCTGCGGCTGCTTCTCTGTATCTCTTACACTCC
TGTTGAAACTGACTCAAGCACAGCTCTTCAAACAGTCTCAACTCTGGT
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Coding sequence (CDS) from alignment at scaffold_3:1046114..1046761-

>mRNA_424 ID=mRNA_424|Name=jgi.p|Nanoce1779_2|577285|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_3:1046114..1046761- (Nannochloropsis oceanica)
ATGTCCAACTCCCGCGGCTGCACCTCCTCCCCTCCTTCACCATCGTCACC
CGCCTTCGACCCCTTTTTCCATCTCCTCCTCCTTCTGTGTCCTCTGTCTT
CCTCTCTATCGTCTTCGTCATCCGCCCCTGTTTCTTCTCCATTTTTTCCC
GAGCTCTTCATCACGGCGGGCACCACGGGCACCTCATCAAGCAAATCAAG
GGGAAGCACGAACTTGTCCGCCCCCCCCACCAACACCCTCCTCATCACCT
CTTCCATCGCTCCCTCCATTATGCCCTTTGCCACCGCCTCTTCACCGGAA
AGACCCTTCTTCCTCACCACCCCCACCCCTCCTCCTGCTGCTGCGGCAGC
TGCTGCGGCTGCTGCTGCGGCTGCTTCTCTGTATCTCTTACACTCCTGTT
GA
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Synonyms
Publications