jgi.p|Nanoce1779_2|18772, mRNA_4239 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|18772
Unique Name	mRNA_4239
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1591
Alignment location	scaffold_10:91250..92840 -

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Properties


Property Name	Value
TranscriptId	18858
Track	FilteredModels2
ProteinId	18772

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:91250..92840 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|18772	gene_4239	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|18772	mRNA_4239-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4239	CDS_4239	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:91250..92840-
coding sequence from alignment at scaffold_10:91250..92840-

mRNA sequence

>mRNA_4239 ID=mRNA_4239|Name=jgi.p|Nanoce1779_2|18772|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp
GGGGGAAGGAAGAAACCGAAGGGTAATGATAGTGGTAGAGGAGTGGGAGG
AGTTACAGCAGGAGGAGAAGATACTAAGAATGGTGGGGGGGTGGGTGGCG
ATGGGGGAGAAAATGAAGGCAAAGCGAAGAAGATCAAGAAGCTGCAGAAG
CAGCATCAGCAGAAGGTAGGAGGTGGGGAGGTTGGAGACGACATGAGTGT
GGTTAGCAACAGCAACAGCAGCATGGCATTCGGTGGAGGTGGTGGAGGTG
GGAGTGTAGGAAGCAACGCTAGCAGCAGCAACAACATCACCACCAAGAAC
AAGGCAAAGGGCGCCGAAATGCAGGCGGTCGCCCTGGTCACTTTCCAGGA
TGCTGTTAAGAAATGGCGCGAAGAGCAGCAGCAGTCCTCATCACCAGATC
CAGCAGCAGCAGCAGAAGCAGCAGCAGGGGCAGTAACAGAAGGGGTGGCA
GGGACAGCAGCAGGAGCAACAGCAGGAGTAGCAGCAGGAGCAGGGCTAGA
CGAGCTGCCTCTTGCTTTGCGTCCAGCTGCCTTGGCTTTTGACCTGGTCA
TGCGCCGTCCTGCCGGAGAGAAGAAATACAAGAGCACTCACCCGGGAGAC
AACGGGTTGAGTCCCCTTTATATTGATAAGCTGCAGGCTCTCTTGTTGTT
GGGGGGGAAGGGGAGAGAGGGAGGGAGGGCGTGGAGGAAGGGCTTGGCGG
AGGCTGCGGTGGGAAGGGTGCGGGTGTTGAATGGTTTGATGGAGGAATGC
CTAGTAGGGTTTAGGCGACAGTATGAGGTGAAGTTGGAGAGGCTCACCAA
ACGGGCGTGCAGCAACAGCAACAGCAGCAGTAGTAAGATGGAAAGGGGCG
AGGAAGGGATGGAGGGACAGCAGGACGAGGCGATGCCGCCGCCGAAGAGC
GTGGCATTGGATATGAAGTTGAAGCAGTGCCTGTACACCCTTTTGACTAG
CTTAAAGGAGAGGAGCAGCATTCAGGTGTTATTTGCGGGACGAGGGCTTG
AGGGGGGGGCGGAGGGAGAGGAAGCGGAGGGGTTATTGCCTTTGGTGCCG
GTGAAGCATGAGGAGGAAGAACGGAAGGTGTTGACGACATTGGCGATGAT
GTGGCCAGAGGAAGGGATGAAGATTCCTCGGCTGCGGCGGGCCTTCAATG
ACTACAAGGGGAGGCAGCAATTGTTGCAGAGCGTGAACGGTGCTGATGCT
GCTGGAGGTGGCGGGAAAGGGGGAGGAAGCGATGAAGCTGGTGCCCTGGT
GCAGAAGAAGGCTCAGCCAAAGGAAAATGGGATCACGGTGTCTGCGCATG
CGAAATTGAAGAAGACCTCACCCACGACGATGGCGACGACGAAGACGACT
AAAAAGACACAGAATAAGGTGGTCACGGTCGCGACCAAGCAGCGGGCAGG
GCCCTGTAAAGGTTCTTTCCAGGGTTTGCAGCGCATTCCGTTTAATGCCG
CCGACTTCGAGCAGGAGGCCAGAAATGACTAGATGGAGGAAGAGGGGGAA
GGAACGACGGAGGGAAGAGGCAGAGAATTTGTGGTTTGAAAATATTGGAG
GCGATGTTCGAATAAAAAGCATGATTGACATTAACGAGTAA

protein sequence of jgi.p|Nanoce1779_2|18772

>mRNA_4239-protein ID=mRNA_4239-protein|Name=jgi.p|Nanoce1779_2|18772|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
GGRKKPKGNDSGRGVGGVTAGGEDTKNGGGVGGDGGENEGKAKKIKKLQK
QHQQKVGGGEVGDDMSVVSNSNSSMAFGGGGGGGSVGSNASSSNNITTKN
KAKGAEMQAVALVTFQDAVKKWREEQQQSSSPDPAAAAEAAAGAVTEGVA
GTAAGATAGVAAGAGLDELPLALRPAALAFDLVMRRPAGEKKYKSTHPGD
NGLSPLYIDKLQALLLLGGKGREGGRAWRKGLAEAAVGRVRVLNGLMEEC
LVGFRRQYEVKLERLTKRACSNSNSSSSKMERGEEGMEGQQDEAMPPPKS
VALDMKLKQCLYTLLTSLKERSSIQVLFAGRGLEGGAEGEEAEGLLPLVP
VKHEEEERKVLTTLAMMWPEEGMKIPRLRRAFNDYKGRQQLLQSVNGADA
AGGGGKGGGSDEAGALVQKKAQPKENGITVSAHAKLKKTSPTTMATTKTT
KKTQNKVVTVATKQRAGPCKGSFQGLQRIPFNAADFEQEARND*

mRNA from alignment at scaffold_10:91250..92840-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4239 ID=mRNA_4239|Name=jgi.p|Nanoce1779_2|18772|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp|location=Sequence derived from alignment at scaffold_10:91250..92840- (Nannochloropsis oceanica)
GGGGGAAGGAAGAAACCGAAGGGTAATGATAGTGGTAGAGGAGTGGGAGG
AGTTACAGCAGGAGGAGAAGATACTAAGAATGGTGGGGGGGTGGGTGGCG
ATGGGGGAGAAAATGAAGGCAAAGCGAAGAAGATCAAGAAGCTGCAGAAG
CAGCATCAGCAGAAGGTAGGAGGTGGGGAGGTTGGAGACGACATGAGTGT
GGTTAGCAACAGCAACAGCAGCATGGCATTCGGTGGAGGTGGTGGAGGTG
GGAGTGTAGGAAGCAACGCTAGCAGCAGCAACAACATCACCACCAAGAAC
AAGGCAAAGGGCGCCGAAATGCAGGCGGTCGCCCTGGTCACTTTCCAGGA
TGCTGTTAAGAAATGGCGCGAAGAGCAGCAGCAGTCCTCATCACCAGATC
CAGCAGCAGCAGCAGAAGCAGCAGCAGGGGCAGTAACAGAAGGGGTGGCA
GGGACAGCAGCAGGAGCAACAGCAGGAGTAGCAGCAGGAGCAGGGCTAGA
CGAGCTGCCTCTTGCTTTGCGTCCAGCTGCCTTGGCTTTTGACCTGGTCA
TGCGCCGTCCTGCCGGAGAGAAGAAATACAAGAGCACTCACCCGGGAGAC
AACGGGTTGAGTCCCCTTTATATTGATAAGCTGCAGGCTCTCTTGTTGTT
GGGGGGGAAGGGGAGAGAGGGAGGGAGGGCGTGGAGGAAGGGCTTGGCGG
AGGCTGCGGTGGGAAGGGTGCGGGTGTTGAATGGTTTGATGGAGGAATGC
CTAGTAGGGTTTAGGCGACAGTATGAGGTGAAGTTGGAGAGGCTCACCAA
ACGGGCGTGCAGCAACAGCAACAGCAGCAGTAGTAAGATGGAAAGGGGCG
AGGAAGGGATGGAGGGACAGCAGGACGAGGCGATGCCGCCGCCGAAGAGC
GTGGCATTGGATATGAAGTTGAAGCAGTGCCTGTACACCCTTTTGACTAG
CTTAAAGGAGAGGAGCAGCATTCAGGTGTTATTTGCGGGACGAGGGCTTG
AGGGGGGGGCGGAGGGAGAGGAAGCGGAGGGGTTATTGCCTTTGGTGCCG
GTGAAGCATGAGGAGGAAGAACGGAAGGTGTTGACGACATTGGCGATGAT
GTGGCCAGAGGAAGGGATGAAGATTCCTCGGCTGCGGCGGGCCTTCAATG
ACTACAAGGGGAGGCAGCAATTGTTGCAGAGCGTGAACGGTGCTGATGCT
GCTGGAGGTGGCGGGAAAGGGGGAGGAAGCGATGAAGCTGGTGCCCTGGT
GCAGAAGAAGGCTCAGCCAAAGGAAAATGGGATCACGGTGTCTGCGCATG
CGAAATTGAAGAAGACCTCACCCACGACGATGGCGACGACGAAGACGACT
AAAAAGACACAGAATAAGGTGGTCACGGTCGCGACCAAGCAGCGGGCAGG
GCCCTGTAAAGGTTCTTTCCAGGGTTTGCAGCGCATTCCGTTTAATGCCG
CCGACTTCGAGCAGGAGGCCAGAAATGACTAGATGGAGGAAGAGGGGGAA
GGAACGACGGAGGGAAGAGGCAGAGAATTTGTGGTTTGAAAATATTGGAG
GCGATGTTCGAATAAAAAGCATGATTGACATTAACGAGTAA

Coding sequence (CDS) from alignment at scaffold_10:91250..92840-

>mRNA_4239 ID=mRNA_4239|Name=jgi.p|Nanoce1779_2|18772|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_10:91250..92840- (Nannochloropsis oceanica)
GGGGGAAGGAAGAAACCGAAGGGTAATGATAGTGGTAGAGGAGTGGGAGG
AGTTACAGCAGGAGGAGAAGATACTAAGAATGGTGGGGGGGTGGGTGGCG
ATGGGGGAGAAAATGAAGGCAAAGCGAAGAAGATCAAGAAGCTGCAGAAG
CAGCATCAGCAGAAGGTAGGAGGTGGGGAGGTTGGAGACGACATGAGTGT
GGTTAGCAACAGCAACAGCAGCATGGCATTCGGTGGAGGTGGTGGAGGTG
GGAGTGTAGGAAGCAACGCTAGCAGCAGCAACAACATCACCACCAAGAAC
AAGGCAAAGGGCGCCGAAATGCAGGCGGTCGCCCTGGTCACTTTCCAGGA
TGCTGTTAAGAAATGGCGCGAAGAGCAGCAGCAGTCCTCATCACCAGATC
CAGCAGCAGCAGCAGAAGCAGCAGCAGGGGCAGTAACAGAAGGGGTGGCA
GGGACAGCAGCAGGAGCAACAGCAGGAGTAGCAGCAGGAGCAGGGCTAGA
CGAGCTGCCTCTTGCTTTGCGTCCAGCTGCCTTGGCTTTTGACCTGGTCA
TGCGCCGTCCTGCCGGAGAGAAGAAATACAAGAGCACTCACCCGGGAGAC
AACGGGTTGAGTCCCCTTTATATTGATAAGCTGCAGGCTCTCTTGTTGTT
GGGGGGGAAGGGGAGAGAGGGAGGGAGGGCGTGGAGGAAGGGCTTGGCGG
AGGCTGCGGTGGGAAGGGTGCGGGTGTTGAATGGTTTGATGGAGGAATGC
CTAGTAGGGTTTAGGCGACAGTATGAGGTGAAGTTGGAGAGGCTCACCAA
ACGGGCGTGCAGCAACAGCAACAGCAGCAGTAGTAAGATGGAAAGGGGCG
AGGAAGGGATGGAGGGACAGCAGGACGAGGCGATGCCGCCGCCGAAGAGC
GTGGCATTGGATATGAAGTTGAAGCAGTGCCTGTACACCCTTTTGACTAG
CTTAAAGGAGAGGAGCAGCATTCAGGTGTTATTTGCGGGACGAGGGCTTG
AGGGGGGGGCGGAGGGAGAGGAAGCGGAGGGGTTATTGCCTTTGGTGCCG
GTGAAGCATGAGGAGGAAGAACGGAAGGTGTTGACGACATTGGCGATGAT
GTGGCCAGAGGAAGGGATGAAGATTCCTCGGCTGCGGCGGGCCTTCAATG
ACTACAAGGGGAGGCAGCAATTGTTGCAGAGCGTGAACGGTGCTGATGCT
GCTGGAGGTGGCGGGAAAGGGGGAGGAAGCGATGAAGCTGGTGCCCTGGT
GCAGAAGAAGGCTCAGCCAAAGGAAAATGGGATCACGGTGTCTGCGCATG
CGAAATTGAAGAAGACCTCACCCACGACGATGGCGACGACGAAGACGACT
AAAAAGACACAGAATAAGGTGGTCACGGTCGCGACCAAGCAGCGGGCAGG
GCCCTGTAAAGGTTCTTTCCAGGGTTTGCAGCGCATTCCGTTTAATGCCG
CCGACTTCGAGCAGGAGGCCAGAAATGACTAG

Synonyms

Publications