jgi.p|Nanoce1779_2|630134, mRNA_4238 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630134
Unique Name	mRNA_4238
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1387
Alignment location	scaffold_10:88579..90035 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630220
Track	FilteredModels2
ProteinId	630134

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:88579..90035 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630134	gene_4238	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630134	mRNA_4238-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4238	CDS_4238	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:88579..90035+
coding sequence from alignment at scaffold_10:88579..90035+

mRNA sequence

>mRNA_4238 ID=mRNA_4238|Name=jgi.p|Nanoce1779_2|630134|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
CATTAATGCACCCACCCTCTCCTCCTCCTTTTCATCCGTGACAACGGGTT
CGGCGAGCTCCTTGGCGACGACCAGCAACAGCAGCAGCAGCGGCAGCACC
AGCACCAGCAGCAGCAATGGCATGGGTGAAGACGACCGGCGACTGCACAA
CATGCCCAAGGCCCTAGCCAGCAAGTGCGTGGAAGCATTTATATCCTGGG
GCCACGATCATAAGGGTAACCCTGCGGCCTATAAGCAATTCTTGCGCACC
AATCTTCCGCACTATCCGGGCGTGGACGCGGAGAAGGTACGCTTGTACAT
GAAGAATATCTGCGCCACCTACCACGAACGCTACATTCCTGCGCGGGCCC
GTGGTTACAAACAAGATTTTTTTGTCTGGTGGGAGAAGCGTCCCGGTCGT
GGCCGCCCCAAGAAGGACGTCTCAGTGCCGTCGGCTTATGCCTTGGCCCA
CCACTTGGACCCGAGCTTGGCGCCGACCCGATACCGTGGTGGCGGTATCC
CTCAGAGCGAGAGCGGGGCAGGAAGAGGGTTCGCAGCCAATAAATCTCGT
GATCGTCGCACGCCCGCTAAGCGTGCCAAGGCTTTCAAGGCTCGAGGAGG
GAGTAGCCATGATGAGATTCGGCTAAAAAGCTGTGGTGGTCGCGGAGGAG
GAGGCGGTGGGCGTGGGAACTCTGATGACGACTCGGAAGACGACAACGAG
GTATACTACTACGGGAGTGACTTTGAAGAGATTGAGGAGATGGAAGAAGA
TAACGATGGCGAAGTCATGGCCGAAGACAACTACGACCGTCGCCAGCAGA
AGAACAAGGGTGCCGTCCAAGGCTTCTCCAAGTCGGGCCGCGCAATCCGC
CGCCCGTCTGATCCCTACCTTAAGGCAGTGCAGGAAGAGACGACGAAGCG
CGCCCGCATCGAGGCAGCACTTGCTATGATAGAAATGGACGACAATAATG
GCCGCGCCTTGGGTCGGGGGCCTCCTCCTCCCGGCGTCCGCACCCCGTCA
CCGCCTCTGTTCAACACCCATCACGGGGCTTCTGTGTACCCGGTGCGGCA
CCAGGGCCGCAGTGTGCTGCGCATTGAGTCTCCCGTACCTTTGACTGACC
GCGATGTGACGGATATTTTGACGGACCTTCGCAGCAGCCGCTTTGCGCGC
AGCATCAACAGCAACGGTGACCACGCGGGCGGTGGTGGTTGCCAGGCGAG
CAGCAATAGCAAGAGCGACCACAACCACACGGGTGCCACAAAGACCATTA
CCAACGGGGACATTAAAACGCCGGATCCCGCGGTCGCGGCGATTATCCTT
CCTCGGCTCACACTTCTCCTCAGTCCTGCGCCCAGGCATTGGCCGGCCTC
GTTAATCTGGGAGGCGTCCGACGTCTGGGTCATGTAA

protein sequence of jgi.p|Nanoce1779_2|630134

>mRNA_4238-protein ID=mRNA_4238-protein|Name=jgi.p|Nanoce1779_2|630134|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MGEDDRRLHNMPKALASKCVEAFISWGHDHKGNPAAYKQFLRTNLPHYPG
VDAEKVRLYMKNICATYHERYIPARARGYKQDFFVWWEKRPGRGRPKKDV
SVPSAYALAHHLDPSLAPTRYRGGGIPQSESGAGRGFAANKSRDRRTPAK
RAKAFKARGGSSHDEIRLKSCGGRGGGGGGRGNSDDDSEDDNEVYYYGSD
FEEIEEMEEDNDGEVMAEDNYDRRQQKNKGAVQGFSKSGRAIRRPSDPYL
KAVQEETTKRARIEAALAMIEMDDNNGRALGRGPPPPGVRTPSPPLFNTH
HGASVYPVRHQGRSVLRIESPVPLTDRDVTDILTDLRSSRFARSINSNGD
HAGGGGCQASSNSKSDHNHTGATKTITNGDIKTPDPAVAAIILPRLTLLL
SPAPRHWPASLIWEASDVWVM*

mRNA from alignment at scaffold_10:88579..90035+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4238 ID=mRNA_4238|Name=jgi.p|Nanoce1779_2|630134|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_10:88579..90035+ (Nannochloropsis oceanica)
CATTAATGCACCCACCCTCTCCTCCTCCTTTTCATCCGTGACAACGGGTT
CGGCGAGCTCCTTGGCGACGACCAGCAACAGCAGCAGCAGCGGCAGCACC
AGCACCAGCAGCAGCAATGGCATGGGTGAAGACGACCGGCGACTGCACAA
CATGCCCAAGGCCCTAGCCAGCAAGTGCGTGGAAGCATTTATATCCTGGG
GCCACGATCATAAGGGTAACCCTGCGGCCTATAAGCAATTCTTGCGCACC
AATCTTCCGCACTATCCGGGCGTGGACGCGGAGAAGGTACGCTTGTACAT
GAAGAATATCTGCGCCACCTACCACGAACGCTACATTCCTGCGCGGGCCC
GTGGTTACAAACAAGATTTTTTTGTCTGGTGGGAGAAGCGTCCCGGTCGT
GGCCGCCCCAAGAAGGACGTCTCAGTGCCGTCGGCTTATGCCTTGGCCCA
CCACTTGGACCCGAGCTTGGCGCCGACCCGATACCGTGGTGGCGGTATCC
CTCAGAGCGAGAGCGGGGCAGGAAGAGGGTTCGCAGCCAATAAATCTCGT
GATCGTCGCACGCCCGCTAAGCGTGCCAAGGCTTTCAAGGCTCGAGGAGG
GAGTAGCCATGATGAGATTCGGCTAAAAAGCTGTGGTGGTCGCGGAGGAG
GAGGCGGTGGGCGTGGGAACTCTGATGACGACTCGGAAGACGACAACGAG
GTATACTACTACGGGAGTGACTTTGAAGAGATTGAGGAGATGGAAGAAGA
TAACGATGGCGAAGTCATGGCCGAAGACAACTACGACCGTCGCCAGCAGA
AGAACAAGGGTGCCGTCCAAGGCTTCTCCAAGTCGGGCCGCGCAATCCGC
CGCCCGTCTGATCCCTACCTTAAGGCAGTGCAGGAAGAGACGACGAAGCG
CGCCCGCATCGAGGCAGCACTTGCTATGATAGAAATGGACGACAATAATG
GCCGCGCCTTGGGTCGGGGGCCTCCTCCTCCCGGCGTCCGCACCCCGTCA
CCGCCTCTGTTCAACACCCATCACGGGGCTTCTGTGTACCCGGTGCGGCA
CCAGGGCCGCAGTGTGCTGCGCATTGAGTCTCCCGTACCTTTGACTGACC
GCGATGTGACGGATATTTTGACGGACCTTCGCAGCAGCCGCTTTGCGCGC
AGCATCAACAGCAACGGTGACCACGCGGGCGGTGGTGGTTGCCAGGCGAG
CAGCAATAGCAAGAGCGACCACAACCACACGGGTGCCACAAAGACCATTA
CCAACGGGGACATTAAAACGCCGGATCCCGCGGTCGCGGTGATTTCCACG
CCCAGTGCTCGGTCTTTGCATCCTCGCCCGCTCGTTGCCCCGCGTACCAT
CCGCACAGGCGATTATCCTTCCTCGGCTCACACTTCTCCTCAGTCCTGCG
CCCAGGCATTGGCCGGCCTCGTTAATCTGGGAGGCGTCCGACGTCTGGGT
CATGTAA

Coding sequence (CDS) from alignment at scaffold_10:88579..90035+

>mRNA_4238 ID=mRNA_4238|Name=jgi.p|Nanoce1779_2|630134|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_10:88579..90035+ (Nannochloropsis oceanica)
ATGGGTGAAGACGACCGGCGACTGCACAACATGCCCAAGGCCCTAGCCAG
CAAGTGCGTGGAAGCATTTATATCCTGGGGCCACGATCATAAGGGTAACC
CTGCGGCCTATAAGCAATTCTTGCGCACCAATCTTCCGCACTATCCGGGC
GTGGACGCGGAGAAGGTACGCTTGTACATGAAGAATATCTGCGCCACCTA
CCACGAACGCTACATTCCTGCGCGGGCCCGTGGTTACAAACAAGATTTTT
TTGTCTGGTGGGAGAAGCGTCCCGGTCGTGGCCGCCCCAAGAAGGACGTC
TCAGTGCCGTCGGCTTATGCCTTGGCCCACCACTTGGACCCGAGCTTGGC
GCCGACCCGATACCGTGGTGGCGGTATCCCTCAGAGCGAGAGCGGGGCAG
GAAGAGGGTTCGCAGCCAATAAATCTCGTGATCGTCGCACGCCCGCTAAG
CGTGCCAAGGCTTTCAAGGCTCGAGGAGGGAGTAGCCATGATGAGATTCG
GCTAAAAAGCTGTGGTGGTCGCGGAGGAGGAGGCGGTGGGCGTGGGAACT
CTGATGACGACTCGGAAGACGACAACGAGGTATACTACTACGGGAGTGAC
TTTGAAGAGATTGAGGAGATGGAAGAAGATAACGATGGCGAAGTCATGGC
CGAAGACAACTACGACCGTCGCCAGCAGAAGAACAAGGGTGCCGTCCAAG
GCTTCTCCAAGTCGGGCCGCGCAATCCGCCGCCCGTCTGATCCCTACCTT
AAGGCAGTGCAGGAAGAGACGACGAAGCGCGCCCGCATCGAGGCAGCACT
TGCTATGATAGAAATGGACGACAATAATGGCCGCGCCTTGGGTCGGGGGC
CTCCTCCTCCCGGCGTCCGCACCCCGTCACCGCCTCTGTTCAACACCCAT
CACGGGGCTTCTGTGTACCCGGTGCGGCACCAGGGCCGCAGTGTGCTGCG
CATTGAGTCTCCCGTACCTTTGACTGACCGCGATGTGACGGATATTTTGA
CGGACCTTCGCAGCAGCCGCTTTGCGCGCAGCATCAACAGCAACGGTGAC
CACGCGGGCGGTGGTGGTTGCCAGGCGAGCAGCAATAGCAAGAGCGACCA
CAACCACACGGGTGCCACAAAGACCATTACCAACGGGGACATTAAAACGC
CGGATCCCGCGGTCGCGGCGATTATCCTTCCTCGGCTCACACTTCTCCTC
AGTCCTGCGCCCAGGCATTGGCCGGCCTCGTTAATCTGGGAGGCGTCCGA
CGTCTGGGTCATGTAAATGGGTGAAGACGACCGGCGACTGCACAACATGC
CCAAGGCCCTAGCCAGCAAGTGCGTGGAAGCATTTATATCCTGGGGCCAC
GATCATAAGGGTAACCCTGCGGCCTATAAGCAATTCTTGCGCACCAATCT
TCCGCACTATCCGGGCGTGGACGCGGAGAAGGTACGCTTGTACATGAAGA
ATATCTGCGCCACCTACCACGAACGCTACATTCCTGCGCGGGCCCGTGGT
TACAAACAAGATTTTTTTGTCTGGTGGGAGAAGCGTCCCGGTCGTGGCCG
CCCCAAGAAGGACGTCTCAGTGCCGTCGGCTTATGCCTTGGCCCACCACT
TGGACCCGAGCTTGGCGCCGACCCGATACCGTGGTGGCGGTATCCCTCAG
AGCGAGAGCGGGGCAGGAAGAGGGTTCGCAGCCAATAAATCTCGTGATCG
TCGCACGCCCGCTAAGCGTGCCAAGGCTTTCAAGGCTCGAGGAGGGAGTA
GCCATGATGAGATTCGGCTAAAAAGCTGTGGTGGTCGCGGAGGAGGAGGC
GGTGGGCGTGGGAACTCTGATGACGACTCGGAAGACGACAACGAGGTATA
CTACTACGGGAGTGACTTTGAAGAGATTGAGGAGATGGAAGAAGATAACG
ATGGCGAAGTCATGGCCGAAGACAACTACGACCGTCGCCAGCAGAAGAAC
AAGGGTGCCGTCCAAGGCTTCTCCAAGTCGGGCCGCGCAATCCGCCGCCC
GTCTGATCCCTACCTTAAGGCAGTGCAGGAAGAGACGACGAAGCGCGCCC
GCATCGAGGCAGCACTTGCTATGATAGAAATGGACGACAATAATGGCCGC
GCCTTGGGTCGGGGGCCTCCTCCTCCCGGCGTCCGCACCCCGTCACCGCC
TCTGTTCAACACCCATCACGGGGCTTCTGTGTACCCGGTGCGGCACCAGG
GCCGCAGTGTGCTGCGCATTGAGTCTCCCGTACCTTTGACTGACCGCGAT
GTGACGGATATTTTGACGGACCTTCGCAGCAGCCGCTTTGCGCGCAGCAT
CAACAGCAACGGTGACCACGCGGGCGGTGGTGGTTGCCAGGCGAGCAGCA
ATAGCAAGAGCGACCACAACCACACGGGTGCCACAAAGACCATTACCAAC
GGGGACATTAAAACGCCGGATCCCGCGGTCGCGGCGATTATCCTTCCTCG
GCTCACACTTCTCCTCAGTCCTGCGCCCAGGCATTGGCCGGCCTCGTTAA
TCTGGGAGGCGTCCGACGTCTGGGTCATGTAA

Synonyms

Publications