jgi.p|Nanoce1779_2|588460, mRNA_4237 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588460
Unique Name	mRNA_4237
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1288
Alignment location	scaffold_10:85376..86663 -

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Properties


Property Name	Value
TranscriptId	588546
Track	FilteredModels2
ProteinId	588460

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:85376..86663 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588460	gene_4237	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588460	mRNA_4237-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4237	CDS_4237	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:85376..86663-
coding sequence from alignment at scaffold_10:85376..86663-

mRNA sequence

>mRNA_4237 ID=mRNA_4237|Name=jgi.p|Nanoce1779_2|588460|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp
GTGCTTTGTTTGTGTTGGGGCGCACGCAGTCATTCGACACGGCTCTCCTG
CACGACGCTGAAGCCCGCTCCCGTCGTCGTCGTGGGGCTGTCTCTTACGG
TAACCGCCTGATGAATTTTGTAGGATTTACGGTCAAGCTGCTGACCCTCC
TTCTGTTCCAGGTGCTGGGCACAGCCCTCGTTGTGAATGAGTACCAGACA
ACGGGAGTCGTCTCGGAGACCTTGATGAAATTCGCCTCCCTCTTAGCAGG
GCTCGCCTTTGTCCCTCCCCTCGTGGTGGCGCTGCGCGAATCCCTTCCTT
CCCATGCGCGGAACCCGCTTGTACGGGGCTTTTCCTGCTTGTTCGAGCTG
GCTTTAGACACGGTGGCCGTCGGGGCGCTCTCCCTCCTGGCCTCGGTGCT
GCTGACGGCTGTCATGTCCCTCCCTTCCTATAACTTCTTGTTGTCCCACG
AACTAGGGGAGGAGTATATTAAGGGAGCCTTGTCGGCAGGGTTTGTCATG
TTCTTTGTGTGGGCTTTCAGCAGAAATTTTGAGCCGCTGGCCAGCAAGTG
GTTTCTGTGAGAGGAAGGAGGGAGGAAAGGAGGGAGAGAAAGGGAGTATA
TATATATATATAAAGGTTTGTTTTGTGTAGGTTTAGTAGGATCCCTGAAG
CGGGAAATACAATTGATTTCTGTTCAAATGGAGGGAAGGAGAGAGGGAAG
AATGTTGGCGCAACGTAAGTGATTTCTGTACGATGGGAGGGAAGGAGAGA
GGGAGGAAAGAGGGCGGAGGGAGGGAGGAAGGAGCGATGTATATAGGAAG
AGGGGACAAAAGCCAGTGTGATGATATTAGGATCGGTTTGCGGGGGAGCT
TTATCTAAGAGAGGGAGTAGAGGTGGGTGAGGGATAAAGCGGCGATGAGC
TGTGAGGGTTAGGGTTGACCCTGTTCCACAGTAACGGGCCTTAAACGCTC
AACTGACCATTCAAACGGGGATTCTCTTTAGAAGTATAAAGGTATTGATA
TTTCGCGTGGGGGATAATGTGCTAGGGTGTGAGTGTGGGTGTGAGTGTAT
GTTAGAATGTGCATGGTCACGTGTAATAAAGGAAAGGAGGAGGAGAAGAA
GAAGCGAAGTAACAAAAAGAATTGGTTGGGTGTGAAGACGAGTGAAGAGA
AATGAAATGATTTACACGCGGGATCAAATCTACGAGTGAAAGAGGAAGGC
AACAGCGAGAGAGGGAGGGAGAGAGGGAGGGGAGAAGGGAATGTACATGA
GGTAGACATTAATATCAATACGAAGAATTGCCTGTTAC

protein sequence of jgi.p|Nanoce1779_2|588460

>mRNA_4237-protein ID=mRNA_4237-protein|Name=jgi.p|Nanoce1779_2|588460|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MNFVGFTVKLLTLLLFQVLGTALVVNEYQTTGVVSETLMKFASLLAGLAF
VPPLVVALRESLPSHARNPLVRGFSCLFELALDTVAVGALSLLASVLLTA
VMSLPSYNFLLSHELGEEYIKGALSAGFVMFFVWAFSRNFEPLASKWFL*

mRNA from alignment at scaffold_10:85376..86663-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4237 ID=mRNA_4237|Name=jgi.p|Nanoce1779_2|588460|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp|location=Sequence derived from alignment at scaffold_10:85376..86663- (Nannochloropsis oceanica)
GTGCTTTGTTTGTGTTGGGGCGCACGCAGTCATTCGACACGGCTCTCCTG
CACGACGCTGAAGCCCGCTCCCGTCGTCGTCGTGGGGCTGTCTCTTACGG
TAACCGCCTGATGAATTTTGTAGGATTTACGGTCAAGCTGCTGACCCTCC
TTCTGTTCCAGGTGCTGGGCACAGCCCTCGTTGTGAATGAGTACCAGACA
ACGGGAGTCGTCTCGGAGACCTTGATGAAATTCGCCTCCCTCTTAGCAGG
GCTCGCCTTTGTCCCTCCCCTCGTGGTGGCGCTGCGCGAATCCCTTCCTT
CCCATGCGCGGAACCCGCTTGTACGGGGCTTTTCCTGCTTGTTCGAGCTG
GCTTTAGACACGGTGGCCGTCGGGGCGCTCTCCCTCCTGGCCTCGGTGCT
GCTGACGGCTGTCATGTCCCTCCCTTCCTATAACTTCTTGTTGTCCCACG
AACTAGGGGAGGAGTATATTAAGGGAGCCTTGTCGGCAGGGTTTGTCATG
TTCTTTGTGTGGGCTTTCAGCAGAAATTTTGAGCCGCTGGCCAGCAAGTG
GTTTCTGTGAGAGGAAGGAGGGAGGAAAGGAGGGAGAGAAAGGGAGTATA
TATATATATATAAAGGTTTGTTTTGTGTAGGTTTAGTAGGATCCCTGAAG
CGGGAAATACAATTGATTTCTGTTCAAATGGAGGGAAGGAGAGAGGGAAG
AATGTTGGCGCAACGTAAGTGATTTCTGTACGATGGGAGGGAAGGAGAGA
GGGAGGAAAGAGGGCGGAGGGAGGGAGGAAGGAGCGATGTATATAGGAAG
AGGGGACAAAAGCCAGTGTGATGATATTAGGATCGGTTTGCGGGGGAGCT
TTATCTAAGAGAGGGAGTAGAGGTGGGTGAGGGATAAAGCGGCGATGAGC
TGTGAGGGTTAGGGTTGACCCTGTTCCACAGTAACGGGCCTTAAACGCTC
AACTGACCATTCAAACGGGGATTCTCTTTAGAAGTATAAAGGTATTGATA
TTTCGCGTGGGGGATAATGTGCTAGGGTGTGAGTGTGGGTGTGAGTGTAT
GTTAGAATGTGCATGGTCACGTGTAATAAAGGAAAGGAGGAGGAGAAGAA
GAAGCGAAGTAACAAAAAGAATTGGTTGGGTGTGAAGACGAGTGAAGAGA
AATGAAATGATTTACACGCGGGATCAAATCTACGAGTGAAAGAGGAAGGC
AACAGCGAGAGAGGGAGGGAGAGAGGGAGGGGAGAAGGGAATGTACATGA
GGTAGACATTAATATCAATACGAAGAATTGCCTGTTAC

Coding sequence (CDS) from alignment at scaffold_10:85376..86663-

>mRNA_4237 ID=mRNA_4237|Name=jgi.p|Nanoce1779_2|588460|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_10:85376..86663- (Nannochloropsis oceanica)
ATGAATTTTGTAGGATTTACGGTCAAGCTGCTGACCCTCCTTCTGTTCCA
GGTGCTGGGCACAGCCCTCGTTGTGAATGAGTACCAGACAACGGGAGTCG
TCTCGGAGACCTTGATGAAATTCGCCTCCCTCTTAGCAGGGCTCGCCTTT
GTCCCTCCCCTCGTGGTGGCGCTGCGCGAATCCCTTCCTTCCCATGCGCG
GAACCCGCTTGTACGGGGCTTTTCCTGCTTGTTCGAGCTGGCTTTAGACA
CGGTGGCCGTCGGGGCGCTCTCCCTCCTGGCCTCGGTGCTGCTGACGGCT
GTCATGTCCCTCCCTTCCTATAACTTCTTGTTGTCCCACGAACTAGGGGA
GGAGTATATTAAGGGAGCCTTGTCGGCAGGGTTTGTCATGTTCTTTGTGT
GGGCTTTCAGCAGAAATTTTGAGCCGCTGGCCAGCAAGTGGTTTCTGTGA

Synonyms

Publications