Properties
Property Name | Value |
TranscriptId | 588537 |
Track | FilteredModels2 |
ProteinId | 588451 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_10 | supercontig | scaffold_10:79593..82731 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4235 ID=mRNA_4235|Name=jgi.p|Nanoce1779_2|588451|organism=Nannochloropsis oceanica|type=mRNA|length=2774bp GCCTAACGACGCCAAACAGCGCGTCGAGATCCCAGACAAATGTATGCATA ACGGCCGCTGTAAGCGTACTTTAGATTGCAACCTCCAGAGGACAATTTAT GTCGCGTGCTAACGCAGGTCGACACTGTACGGTGCAGAGAATCACACCAG CATGGACAGGATGCCCAGATCTCAGGCACTTGACAGCATCATTTCGGATC GATTAATTGCTTATTTGTTTTTTTCGCGAGATCGACATTGACCCAGTCAA GCCATTTGATAAATGTAATTATGGTCTCCGCATGACTGAAGGAGGGGTGG TACGTCAAATCAAGAGTGGACCCTCCGAGGACGATGAGCGTGGCATGTCC GCAAATCTCCTCATGAAGGACACAGCCGGCGGCACAAGAAGAAAAAGCGG ACGGTAGAAGGGAGGGGGAATGGAGTGGAGGAAGAAGGAGAGGAAAGAAG CAGATGATGGTTTTGATGAGGAAGATGAGCATCTGCCCTACCACACGTCT CCCCAGCCCTCCCGAGTCCGCAAGGCGGAGAAATTGAGTGGCGGTAGCCC GCTGGCTGTCCTACAATTTAATAACAGAAGGTGTTGCAGCACACAAGAAT ATCAAGAACAACCCGGAGCATGTCCTCGTTGCACTCTGCAGGGTCTTGGT TCATCTCAACGGCTGGAAGCTCGCGTCTGCTGTCATGCCTTGTCCTCCAA CGAGTATAGATTTCTTCCAGCAGTAACAGGTGCACTTGGACTGTTGCCAC CCACCACACAACACGCGAGCGGCTCGCATCACCCTTTCTATTAACATATT GCACAGGATGAAGACTAGGTTGACAACATGCTCCTTGCGAGTTTGTGACC GTTTTACTGGCTGTGGCTGTGCCACGTTCTGTCGTGTTGACTAAGTGAGG GCCTACCCTTCCACCTCGTTTTCCAACCTACACATGCGCTCTCTGTGCAT CACTCAACACTTCCACACAGGCGCGGGCCTGTCGCAACTGCCCAATAACA TCTCCTCGACAGCGTGCGCCGCTTGTCCCAAACCTCCTCTTCGCATCCCA GACTTCACGCTAATCTCGCCCGCGATCCTTCTATGAAGCTAAGCCTAGCA CTTGCCTACGCCGTTTTCTACTGTTGCCCCTCCTTTCCCGCTCCTACACA TGCATTCCTGCTGACTAACCTTGCCAGCCGGAGCTTGAAACACCCTACGC CGTCCCAACAAAAGGGCTTGTATAGTCGCGTCGAGTACGAAGCTCGGGGG CCCCTCCTCGATGAGTATGGCTTGCCACTTGACCCGTCTGATTTGGTGGA GAAACCCACTGTGCCCTTCAAGGATCGCTTTTACGACGTGGTAGATAAGA CGACGGAGCTTGTGGAAAGCTTCAGGGGGGGAAGGAGGGAGCAGGACGCC CGCCGCATCGTTCACCAGCGTCGTTCAATAGCTAAAGCCATGGCTATAAA AGACAAGGTCATCGTATCCCTAGACTATGTTACCCATCCAGGAAAAGCGT GGAAAACCTTCGTCGCGGATCCAATCTCCGCCCGTCAAAAGCGCCAAAAC GCAATTCGAGCCGAAAAACGCGCGAAACTCGAAAGGAGCCTCCAACGGTA CTATGCGGCGAAGAACCGTTTTTATGAAACAATAGATGCGATTGAATCGA CCTCAAGGAAAACATTCAAGGTTGCCAAGGGGGTGGGTTCGGCAGTGGTT GGAGCCCCAGCAACCGTGCAGAGGACGGTCAAGAGCGTGAAGAGTCATGT GCAGGACACAACAGAGGCAGTGGCGAAGGTGGCGTCGGGTGTCTCCACGA TTGTTTCAAAGATTGGCTCGGTCATCAAAAAGGATGGGCCGAATGCAGTA GGTGGGTCCGGGGGGGAGGCCCGAAAGGGGAAGAAGGACGGGAAGGAGGG ACGGGTGGAGGGGGAGGCAGACCCGATGAAGGTCCGAGAAATTTGGGAGA CGAAGCAACAGACTGCCGTGCGTACGATTTGGCAAGAGGACGAGTTGGTG AAGAAACCAGCGATTTCGGTTACATCTGCTCCTGTTCCAGCCCCCACGGC GGATGCGCGAGGTCCTGCAACCATGGCTACGGCGACCGACGCACCTACTG CCGCTGTCGCTGCTGCGCCCGCCAATCCCACCTCTGTGACTACTCCCACG GATACGCGTCTTTCCGTCAGTCAGGATGTGGGTGAGAAACGTTGCTCTAC AAACCAGAGAAGCAGTGGCAGCATGGGCGAAGGCCTCTCCTTCCGTCAGC GCGTGGACGCGGAGGAGAAGGCACGCTCACGTCGTTAAACCTGTTATTCT CAAGTTGGGAAATACTAGAGAAAAAGGAAGAAAAGAAAGGAGAATGTGTA CAAAATAGCATTATAGCAGTGAGCGAGAAAGAGAAAAAGAAAGTGAGAGA GAGGAGGGATGGAAGAGAGAACGGAAGGGAATTACAAGGGCAAGGAGGAC GCACTGGTTTTCATTCTTTGCAGTCACCTATGGGGTTTTCACACAATCGT GCATGAATTCTTGAAACTTAACATAACCATGCATGTGCACATAATTCTCT GTGTCTTTAACATGCGATTTTAATGTTCCACCGGCACGAAAGAAGGGAGG GATGGACGAAGGAAAGGGAGATGGGGAAAGGTCTTTGTGTGATAAAAGGA GAGAACTTTTTTTTTTGGAAATTTCCCCAGCAAGCGGCGGCTTACGCGAA ACTCCCAGTAGGCAGGAGTAATAAGAATAATCAAAATTAAAGTTTGAAGG TCACATACATACATGTATGCTTTC back to topprotein sequence of jgi.p|Nanoce1779_2|588451 >mRNA_4235-protein ID=mRNA_4235-protein|Name=jgi.p|Nanoce1779_2|588451|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp MKLSLALAYAVFYCCPSFPAPTHAFLLTNLASRSLKHPTPSQQKGLYSRV EYEARGPLLDEYGLPLDPSDLVEKPTVPFKDRFYDVVDKTTELVESFRGG RREQDARRIVHQRRSIAKAMAIKDKVIVSLDYVTHPGKAWKTFVADPISA RQKRQNAIRAEKRAKLERSLQRYYAAKNRFYETIDAIESTSRKTFKVAKG VGSAVVGAPATVQRTVKSVKSHVQDTTEAVAKVASGVSTIVSKIGSVIKK DGPNAVGGSGGEARKGKKDGKEGRVEGEADPMKVREIWETKQQTAVRTIW QEDELVKKPAISVTSAPVPAPTADARGPATMATATDAPTAAVAAAPANPT SVTTPTDTRLSVSQDVGEKRCSTNQRSSGSMGEGLSFRQRVDAEEKARSR R* back to topmRNA from alignment at scaffold_10:79593..82731+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4235 ID=mRNA_4235|Name=jgi.p|Nanoce1779_2|588451|organism=Nannochloropsis oceanica|type=mRNA|length=3139bp|location=Sequence derived from alignment at scaffold_10:79593..82731+ (Nannochloropsis oceanica) GCCTAACGACGCCAAACAGCGCGTCGAGATCCCAGACAAATGTATGCATA
ACGGCCGCTGTAAGCGTACTTTAGATTGCAACCTCCAGAGGACAATTTAT
GTCGCGTGCTAACGCAGGTCGACACTGTACGGTGCAGAGAATCACACCAG
CATGGACAGGATGCCCAGATCTCAGGCACTTGACAGCATCATTTCGGATC
GATTAATTGCTTATTTGTTTTTTTCGCGAGATCGACATTGACCCAGTCAA
GCCATTTGATAAATGTAATTATGGTCTCCGCATGACTGAAGGAGGGGTGG
TACGTCAAATCAAGAGTGGACCCTCCGAGGACGATGAGCGTGGCATGTCC
GCAAATCTCCTCATGAAGGACACAGCCGGCGGCACAAGAAGAAAAAGCGG
ACGGTAGAAGGGAGGGGGAATGGAGTGGAGGAAGAAGGAGAGGAAAGAAG
CAGATGATGGTTTTGATGAGGAAGATGAGCATCTGCCCTACCACACGTCT
CCCCAGCCCTCCCGAGTCCGCAAGGCGGAGAAATTGAGTGGCGGTAGCCC
GCTGGCTGTCCTACAATTTAATAACAGAAGGTGTTGCAGCACACAAGAAT
ATCAAGAACAACCCGGAGCATGTCCTCGTTGCACTCTGCAGGGTCTTGGT
TCATCTCAACGGCTGGAAGCTCGCGTCTGCTGTCATGCCTTGTCCTCCAA
CGAGTATAGATTTCTTCCAGCAGTAACAGGTGCACTTGGACTGTTGCCAC
CCACCACACAACACGCGAGCGGCTCGCATCACCCTTTCTATTAACATATT
GCACAGGATGAAGACTAGGTTGACAACATGCTCCTTGCGAGTTTGTGACC
GTTTTACTGGCTGTGGCTGTGCCACGTTCTGTCGTGTTGACTAAGTGAGG
GCCTACCCTTCCACCTCGTTTTCCAACCTACACATGCGCTCTCTGTGCAT
CACTCAACACTTCCACACAGGCGCGGGCCTGTCGCAACTGCCCAATAACA
TCTCCTCGACAGCGTGCGCCGCTTGTCCCAAACCTCCTCTTCGCATCCCA
GACTTCACGCTAATCTCGCCCGCGATCCTTCTATGAAGCTAAGCCTAGCA
CTTGCCTACGCCGTTTTCTACTGTTGCCCCTCCTTTCCCGCTCCTACACA
TGCATTCCTGCTGACTAACCTTGCCAGCCGGAGCTTGAAACACCCTACGC
CGTCCCAACAAAAGGGCTTGTATAGTCGCGTCGAGTACGAAGCTCGGGGG
CCCCTCCTCGATGAGTATGGCTTGCCACTTGACCCGTCTGATTTGGTGGA
GAAACCCACTGTGCCCTTCAAGGTATGAGAGAAGTAATAGAAATCAGTTT
GATTGAAGGATATTTGCCTCTATGTCTACCTTATTGCCTGCATGTTGGTT
GGGCAGTGGGAACGTTCGTGGCGGGATCAATGTGACGTTCCACTATGTAT
TTTCACATTTTCACATTCTTGTTCCCCTTTTTATCACGACTACCATGACA
GGATCGCTTTTACGACGTGGTAGATAAGACGACGGAGCTTGTGGAAAGCT
TCAGGGGGGGAAGGAGGGAGCAGGACGCCCGCCGCATCGTTCACCAGCGT
CGTTCAATAGCTAAGTGAGTGAAAGATCATTTACTTGCGCAACTCCCTGC
TTTCGCGGTCTAGAATGGGCATGAGTATTGTCTCTATGACCCTGTTCCGG
TCTCTTTCTCTCTCTGCTCTCTCTCCCTTTCCTCTCCCTCACAACCCTTT
GCTTCCCGGTCTCCTTCCTTCCTTTCAACCATCCTCATCCACCCTCACAG
AGCCATGGCTATAAAAGACAAGGTCATCGTATCCCTAGACTATGTTACCC
ATCCAGGAAAAGCGTGGAAAACCTTCGTCGCGGATCCAATCTCCGCCCGT
CAAAAGCGCCAAAACGCAATTCGAGCCGAAAAACGCGCGAAACTCGAAAG
GAGCCTCCAACGGTACTATGCGGCGAAGAACCGTTTTTATGAAACAATAG
ATGCGATTGAATCGACCTCAAGGAAAACATTCAAGGTTGCCAAGGGGGTG
GGTTCGGCAGTGGTTGGAGCCCCAGCAACCGTGCAGAGGACGGTCAAGAG
CGTGAAGAGTCATGTGCAGGACACAACAGAGGCAGTGGCGAAGGTGGCGT
CGGGTGTCTCCACGATTGTTTCAAAGATTGGCTCGGTCATCAAAAAGGAT
GGGCCGAATGCAGTAGGTGGGTCCGGGGGGGAGGCCCGAAAGGGGAAGAA
GGACGGGAAGGAGGGACGGGTGGAGGGGGAGGCAGACCCGATGAAGGTCC
GAGAAATTTGGGAGACGAAGCAACAGACTGCCGTGCGTACGATTTGGCAA
GAGGACGAGTTGGTGAAGAAACCAGCGATTTCGGTTACATCTGCTCCTGT
TCCAGCCCCCACGGCGGATGCGCGAGGTCCTGCAACCATGGCTACGGCGA
CCGACGCACCTACTGCCGCTGTCGCTGCTGCGCCCGCCAATCCCACCTCT
GTGACTACTCCCACGGATACGCGTCTTTCCGTCAGTCAGGATGTGGGTGA
GAAACGTTGCTCTACAAACCAGAGAAGCAGTGGCAGCATGGGCGAAGGCC
TCTCCTTCCGTCAGCGCGTGGACGCGGAGGAGAAGGCACGCTCACGTCGT
TAAACCTGTTATTCTCAAGTTGGGAAATACTAGAGAAAAAGGAAGAAAAG
AAAGGAGAATGTGTACAAAATAGCATTATAGCAGTGAGCGAGAAAGAGAA
AAAGAAAGTGAGAGAGAGGAGGGATGGAAGAGAGAACGGAAGGGAATTAC
AAGGGCAAGGAGGACGCACTGGTTTTCATTCTTTGCAGTCACCTATGGGG
TTTTCACACAATCGTGCATGAATTCTTGAAACTTAACATAACCATGCATG
TGCACATAATTCTCTGTGTCTTTAACATGCGATTTTAATGTTCCACCGGC
ACGAAAGAAGGGAGGGATGGACGAAGGAAAGGGAGATGGGGAAAGGTCTT
TGTGTGATAAAAGGAGAGAACTTTTTTTTTTGGAAATTTCCCCAGCAAGC
GGCGGCTTACGCGAAACTCCCAGTAGGCAGGAGTAATAAGAATAATCAAA
ATTAAAGTTTGAAGGTCACATACATACATGTATGCTTTC back to topCoding sequence (CDS) from alignment at scaffold_10:79593..82731+ >mRNA_4235 ID=mRNA_4235|Name=jgi.p|Nanoce1779_2|588451|organism=Nannochloropsis oceanica|type=CDS|length=3618bp|location=Sequence derived from alignment at scaffold_10:79593..82731+ (Nannochloropsis oceanica) ATGAAGCTAAGCCTAGCACTTGCCTACGCCGTTTTCTACTGTTGCCCCTC CTTTCCCGCTCCTACACATGCATTCCTGCTGACTAACCTTGCCAGCCGGA GCTTGAAACACCCTACGCCGTCCCAACAAAAGGGCTTGTATAGTCGCGTC GAGTACGAAGCTCGGGGGCCCCTCCTCGATGAGTATGGCTTGCCACTTGA CCCGTCTGATTTGGTGGAGAAACCCACTGTGCCCTTCAAGGATCGCTTTT ACGACGTGGTAGATAAGACGACGGAGCTTGTGGAAAGCTTCAGGGGGGGA AGGAGGGAGCAGGACGCCCGCCGCATCGTTCACCAGCGTCGTTCAATAGC TAAAGCCATGGCTATAAAAGACAAGGTCATCGTATCCCTAGACTATGTTA CCCATCCAGGAAAAGCGTGGAAAACCTTCGTCGCGGATCCAATCTCCGCC CGTCAAAAGCGCCAAAACGCAATTCGAGCCGAAAAACGCGCGAAACTCGA AAGGAGCCTCCAACGGTACTATGCGGCGAAGAACCGTTTTTATGAAACAA TAGATGCGATTGAATCGACCTCAAGGAAAACATTCAAGGTTGCCAAGGGG GTGGGTTCGGCAGTGGTTGGAGCCCCAGCAACCGTGCAGAGGACGGTCAA GAGCGTGAAGAGTCATGTGCAGGACACAACAGAGGCAGTGGCGAAGGTGG CGTCGGGTGTCTCCACGATTGTTTCAAAGATTGGCTCGGTCATCAAAAAG GATGGGCCGAATGCAGTAGGTGGGTCCGGGGGGGAGGCCCGAAAGGGGAA GAAGGACGGGAAGGAGGGACGGGTGGAGGGGGAGGCAGACCCGATGAAGG TCCGAGAAATTTGGGAGACGAAGCAACAGACTGCCGTGCGTACGATTTGG CAAGAGGACGAGTTGGTGAAGAAACCAGCGATTTCGGTTACATCTGCTCC TGTTCCAGCCCCCACGGCGGATGCGCGAGGTCCTGCAACCATGGCTACGG CGACCGACGCACCTACTGCCGCTGTCGCTGCTGCGCCCGCCAATCCCACC TCTGTGACTACTCCCACGGATACGCGTCTTTCCGTCAGTCAGGATGTGGG TGAGAAACGTTGCTCTACAAACCAGAGAAGCAGTGGCAGCATGGGCGAAG GCCTCTCCTTCCGTCAGCGCGTGGACGCGGAGGAGAAGGCACGCTCACGT CGTTAAATGAAGCTAAGCCTAGCACTTGCCTACGCCGTTTTCTACTGTTG CCCCTCCTTTCCCGCTCCTACACATGCATTCCTGCTGACTAACCTTGCCA GCCGGAGCTTGAAACACCCTACGCCGTCCCAACAAAAGGGCTTGTATAGT CGCGTCGAGTACGAAGCTCGGGGGCCCCTCCTCGATGAGTATGGCTTGCC ACTTGACCCGTCTGATTTGGTGGAGAAACCCACTGTGCCCTTCAAGGATC GCTTTTACGACGTGGTAGATAAGACGACGGAGCTTGTGGAAAGCTTCAGG GGGGGAAGGAGGGAGCAGGACGCCCGCCGCATCGTTCACCAGCGTCGTTC AATAGCTAAAGCCATGGCTATAAAAGACAAGGTCATCGTATCCCTAGACT ATGTTACCCATCCAGGAAAAGCGTGGAAAACCTTCGTCGCGGATCCAATC TCCGCCCGTCAAAAGCGCCAAAACGCAATTCGAGCCGAAAAACGCGCGAA ACTCGAAAGGAGCCTCCAACGGTACTATGCGGCGAAGAACCGTTTTTATG AAACAATAGATGCGATTGAATCGACCTCAAGGAAAACATTCAAGGTTGCC AAGGGGGTGGGTTCGGCAGTGGTTGGAGCCCCAGCAACCGTGCAGAGGAC GGTCAAGAGCGTGAAGAGTCATGTGCAGGACACAACAGAGGCAGTGGCGA AGGTGGCGTCGGGTGTCTCCACGATTGTTTCAAAGATTGGCTCGGTCATC AAAAAGGATGGGCCGAATGCAGTAGGTGGGTCCGGGGGGGAGGCCCGAAA GGGGAAGAAGGACGGGAAGGAGGGACGGGTGGAGGGGGAGGCAGACCCGA TGAAGGTCCGAGAAATTTGGGAGACGAAGCAACAGACTGCCGTGCGTACG ATTTGGCAAGAGGACGAGTTGGTGAAGAAACCAGCGATTTCGGTTACATC TGCTCCTGTTCCAGCCCCCACGGCGGATGCGCGAGGTCCTGCAACCATGG CTACGGCGACCGACGCACCTACTGCCGCTGTCGCTGCTGCGCCCGCCAAT CCCACCTCTGTGACTACTCCCACGGATACGCGTCTTTCCGTCAGTCAGGA TGTGGGTGAGAAACGTTGCTCTACAAACCAGAGAAGCAGTGGCAGCATGG GCGAAGGCCTCTCCTTCCGTCAGCGCGTGGACGCGGAGGAGAAGGCACGC TCACGTCGTTAAATGAAGCTAAGCCTAGCACTTGCCTACGCCGTTTTCTA CTGTTGCCCCTCCTTTCCCGCTCCTACACATGCATTCCTGCTGACTAACC TTGCCAGCCGGAGCTTGAAACACCCTACGCCGTCCCAACAAAAGGGCTTG TATAGTCGCGTCGAGTACGAAGCTCGGGGGCCCCTCCTCGATGAGTATGG CTTGCCACTTGACCCGTCTGATTTGGTGGAGAAACCCACTGTGCCCTTCA AGGATCGCTTTTACGACGTGGTAGATAAGACGACGGAGCTTGTGGAAAGC TTCAGGGGGGGAAGGAGGGAGCAGGACGCCCGCCGCATCGTTCACCAGCG TCGTTCAATAGCTAAAGCCATGGCTATAAAAGACAAGGTCATCGTATCCC TAGACTATGTTACCCATCCAGGAAAAGCGTGGAAAACCTTCGTCGCGGAT CCAATCTCCGCCCGTCAAAAGCGCCAAAACGCAATTCGAGCCGAAAAACG CGCGAAACTCGAAAGGAGCCTCCAACGGTACTATGCGGCGAAGAACCGTT TTTATGAAACAATAGATGCGATTGAATCGACCTCAAGGAAAACATTCAAG GTTGCCAAGGGGGTGGGTTCGGCAGTGGTTGGAGCCCCAGCAACCGTGCA GAGGACGGTCAAGAGCGTGAAGAGTCATGTGCAGGACACAACAGAGGCAG TGGCGAAGGTGGCGTCGGGTGTCTCCACGATTGTTTCAAAGATTGGCTCG GTCATCAAAAAGGATGGGCCGAATGCAGTAGGTGGGTCCGGGGGGGAGGC CCGAAAGGGGAAGAAGGACGGGAAGGAGGGACGGGTGGAGGGGGAGGCAG ACCCGATGAAGGTCCGAGAAATTTGGGAGACGAAGCAACAGACTGCCGTG CGTACGATTTGGCAAGAGGACGAGTTGGTGAAGAAACCAGCGATTTCGGT TACATCTGCTCCTGTTCCAGCCCCCACGGCGGATGCGCGAGGTCCTGCAA CCATGGCTACGGCGACCGACGCACCTACTGCCGCTGTCGCTGCTGCGCCC GCCAATCCCACCTCTGTGACTACTCCCACGGATACGCGTCTTTCCGTCAG TCAGGATGTGGGTGAGAAACGTTGCTCTACAAACCAGAGAAGCAGTGGCA GCATGGGCGAAGGCCTCTCCTTCCGTCAGCGCGTGGACGCGGAGGAGAAG GCACGCTCACGTCGTTAA back to top
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