jgi.p|Nanoce1779_2|588441, mRNA_4233 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588441
Unique NamemRNA_4233
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2342
Alignment locationscaffold_10:71336..73677 -

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Properties
Property NameValue
TranscriptId588527
TrackFilteredModels2
ProteinId588441
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:71336..73677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588441gene_4233Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588441mRNA_4233-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4233CDS_4233Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4233 ID=mRNA_4233|Name=jgi.p|Nanoce1779_2|588441|organism=Nannochloropsis oceanica|type=mRNA|length=2342bp
ACAGGAAACCTTTCCTCGCCGAACACTTCAAAAATGATCGACAAGATAAC
CAAGAAGCGGGTCATTACCGCCTCCGTGCTGAGCGTCATCTTTGCCCTGT
GCATCGCCATGACGGTCTTCGACAGCAAGGACGGAAGCTTCATTATGGCG
GATGACGACGCTTCCGTGATTGCCTACAATGATGCCTACCCGACTGACGA
GGAGCCTAAGCTCCTGCCTGGTGACATAGCGTGGATGCTCACCTCCACTG
CTCTTGTCTTGCTCATGACTCCCGGCCTGGCCTTCTTCTACGGCGGCATG
GTGCGTGCCAAGAACGTGATTTCCACCTTGCTCCAGTCGTTTATGGCCAT
GGGTGTTATCACGATCCTCTGGACTGTCGTCGGTTTCTCCCTGGCCTTTG
GTGACTCCCTCTCGGGCTACATGGGCAACCCCGCCACCTTCCCCTTCTAT
AACAATGTGGGCGCAGCCGCCGATACTAACTTCTCCGCCACGATTCCCCT
GGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGCTATTATTACCCCTGCTT
TGATTTCGGGCGCCATTGCTGAGCGTGTCCGCTTCACCTCTTACATCATC
TTCATTATCCTCTTCTCCCTCTTCATCTACTGCCCTCTGGCCCACATGAC
CTGGCACCCTGACGGTCTCCTTGCCAAGGCCGGCATCCTGGATTTCGCCG
GCGGCACCGTCGTACACATGTCCTCGGGTTACGCGGCATTGGTTGGCTCG
ATCATCCTGGGGCCCCGTAAGGACGTGAAGAAGATGCAGCCCGCCAACAT
CCCCTTCGTCATGCTCGGAACTGCCCTCCTGTGGTTTGGATGGTTTGGTT
TCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGTTAGCAGTGCAGGCTTTC
TTGACCACCAACACGGCTACAGCGGCTGCCATGCTTACGTGGGTTTTCGT
GGACCACATCCGTGGGAGCAAGTCCACCGCCATGGGCGCATGTGTTGGGG
CTGTGGTAGGGCTCGTCGTGATCACACCCGGCGCCGGGTTCGTCACCATC
GGTGGCTCGGCGTGCATGGGCATTATCGGCGCTGTGATTTCCAACGTCGT
GGCCCATTACTTTAACACCAAGGCGAACATTGATGATACGTTGGACGTGT
GGCCTTGCCACGGCCTGGGCGGGACTGTTGGCATGGTCCTCACCTCGTGC
TTCTGCACCAGCACCGTTAACCCAGACTCTCCGGACGGCTTGTTCTACGG
AGACCCCACCACGTTCTGGCACCATCTAGTGGCGCTTGTGTGCATCATCC
CTTTCATCATGGGCATGTCCTTTGTCTGCTACCAGATCACGAACTTCATC
TACCCTCTGCGTTGTGGTGAGAAATCCGAAAAGCTCGGCCTGGACATGTC
GCAGCACAAGGAGACCATCATCCTTGAGGATGAGGGCATGGAGAAGCCCG
TCGACGACTTGGATGCGTCCAGCCGCATTGAGCTTGGCTCCATGTAAGCC
TCTTTCTCATGACGGCTTCTTGGCTTCAGTTTTGGCGCGAACGGAAGGGG
GAGAGGGGAAGAGAATGAGAGTGAGTTCTTCTCCTAGTCGTCTACCGCCT
GCCTATGTTCTGTGTCAGTTCTAATCGACATATGGTCGAACATATAAATA
AATATATGCGTGTGCTTGCTCACAGTATTAAGAGACGTAATTTTTAATAA
AGAACAAGTCATGCTGGTCATAGTGAAAAGTGAGTATAAATGAGGGAAAA
GATATCGGACGACTAAATGCATAACTCTGGCAGGGAGAGAAAAAAATAAA
AGGATGGAGAGAGGGAAGGAAGGAGTGATGGAACGATTTCCTGCCTTATC
TCTTTTAGTTCGAATTCCAATGTTAGTCTTATTTGTGTCCTGATGGCCCC
CCGGGAGGGAGGAAGGGAGAGAAAGAATGAGAAACGAAAAGACAGCGAAC
AATTCTCTTAGCAACGAAGACGTGTATAGCCACTTTTGGTGCAATGGGAA
GACAAAATGAGGAAGCAGCGTGTCGGGTGGGAAGGTGGAAGGGAGGGACA
AAGGGGAGGAAGGGTTAGGAGCGACGTGTCGTCATGTTGATGCGCGCATT
TCGAAAGTGCTGCTCAACGTCCAAGGCATGGGTTCGTCATGCATCACCTT
CCCTCTCTTGCCCTCTCATTCGCCTTTCCCTCTGGACGCGATGGTGCGCG
GGCCAGAAGATGGAGCACTGGTGTTGTCAAATCAAGCACTTGATCAAACG
TAATACGAAGAAAGCTGTGCCCGTACGAGATGGTAAGGAGAGAGAGAGAA
TGACAAGGGAAAAAAGAACCCTGCCACCGAAACTCTGACAAC
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protein sequence of jgi.p|Nanoce1779_2|588441

>mRNA_4233-protein ID=mRNA_4233-protein|Name=jgi.p|Nanoce1779_2|588441|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MIDKITKKRVITASVLSVIFALCIAMTVFDSKDGSFIMADDDASVIAYND
AYPTDEEPKLLPGDIAWMLTSTALVLLMTPGLAFFYGGMVRAKNVISTLL
QSFMAMGVITILWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNF
SATIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIILFSLFIYC
PLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRKDVKK
MQPANIPFVMLGTALLWFGWFGFNAGSALAASPLAVQAFLTTNTATAAAM
LTWVFVDHIRGSKSTAMGACVGAVVGLVVITPGAGFVTIGGSACMGIIGA
VISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFCTSTVNPDSP
DGLFYGDPTTFWHHLVALVCIIPFIMGMSFVCYQITNFIYPLRCGEKSEK
LGLDMSQHKETIILEDEGMEKPVDDLDASSRIELGSM*
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mRNA from alignment at scaffold_10:71336..73677-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4233 ID=mRNA_4233|Name=jgi.p|Nanoce1779_2|588441|organism=Nannochloropsis oceanica|type=mRNA|length=2342bp|location=Sequence derived from alignment at scaffold_10:71336..73677- (Nannochloropsis oceanica)
ACAGGAAACCTTTCCTCGCCGAACACTTCAAAAATGATCGACAAGATAAC
CAAGAAGCGGGTCATTACCGCCTCCGTGCTGAGCGTCATCTTTGCCCTGT
GCATCGCCATGACGGTCTTCGACAGCAAGGACGGAAGCTTCATTATGGCG
GATGACGACGCTTCCGTGATTGCCTACAATGATGCCTACCCGACTGACGA
GGAGCCTAAGCTCCTGCCTGGTGACATAGCGTGGATGCTCACCTCCACTG
CTCTTGTCTTGCTCATGACTCCCGGCCTGGCCTTCTTCTACGGCGGCATG
GTGCGTGCCAAGAACGTGATTTCCACCTTGCTCCAGTCGTTTATGGCCAT
GGGTGTTATCACGATCCTCTGGACTGTCGTCGGTTTCTCCCTGGCCTTTG
GTGACTCCCTCTCGGGCTACATGGGCAACCCCGCCACCTTCCCCTTCTAT
AACAATGTGGGCGCAGCCGCCGATACTAACTTCTCCGCCACGATTCCCCT
GGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGCTATTATTACCCCTGCTT
TGATTTCGGGCGCCATTGCTGAGCGTGTCCGCTTCACCTCTTACATCATC
TTCATTATCCTCTTCTCCCTCTTCATCTACTGCCCTCTGGCCCACATGAC
CTGGCACCCTGACGGTCTCCTTGCCAAGGCCGGCATCCTGGATTTCGCCG
GCGGCACCGTCGTACACATGTCCTCGGGTTACGCGGCATTGGTTGGCTCG
ATCATCCTGGGGCCCCGTAAGGACGTGAAGAAGATGCAGCCCGCCAACAT
CCCCTTCGTCATGCTCGGAACTGCCCTCCTGTGGTTTGGATGGTTTGGTT
TCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGTTAGCAGTGCAGGCTTTC
TTGACCACCAACACGGCTACAGCGGCTGCCATGCTTACGTGGGTTTTCGT
GGACCACATCCGTGGGAGCAAGTCCACCGCCATGGGCGCATGTGTTGGGG
CTGTGGTAGGGCTCGTCGTGATCACACCCGGCGCCGGGTTCGTCACCATC
GGTGGCTCGGCGTGCATGGGCATTATCGGCGCTGTGATTTCCAACGTCGT
GGCCCATTACTTTAACACCAAGGCGAACATTGATGATACGTTGGACGTGT
GGCCTTGCCACGGCCTGGGCGGGACTGTTGGCATGGTCCTCACCTCGTGC
TTCTGCACCAGCACCGTTAACCCAGACTCTCCGGACGGCTTGTTCTACGG
AGACCCCACCACGTTCTGGCACCATCTAGTGGCGCTTGTGTGCATCATCC
CTTTCATCATGGGCATGTCCTTTGTCTGCTACCAGATCACGAACTTCATC
TACCCTCTGCGTTGTGGTGAGAAATCCGAAAAGCTCGGCCTGGACATGTC
GCAGCACAAGGAGACCATCATCCTTGAGGATGAGGGCATGGAGAAGCCCG
TCGACGACTTGGATGCGTCCAGCCGCATTGAGCTTGGCTCCATGTAAGCC
TCTTTCTCATGACGGCTTCTTGGCTTCAGTTTTGGCGCGAACGGAAGGGG
GAGAGGGGAAGAGAATGAGAGTGAGTTCTTCTCCTAGTCGTCTACCGCCT
GCCTATGTTCTGTGTCAGTTCTAATCGACATATGGTCGAACATATAAATA
AATATATGCGTGTGCTTGCTCACAGTATTAAGAGACGTAATTTTTAATAA
AGAACAAGTCATGCTGGTCATAGTGAAAAGTGAGTATAAATGAGGGAAAA
GATATCGGACGACTAAATGCATAACTCTGGCAGGGAGAGAAAAAAATAAA
AGGATGGAGAGAGGGAAGGAAGGAGTGATGGAACGATTTCCTGCCTTATC
TCTTTTAGTTCGAATTCCAATGTTAGTCTTATTTGTGTCCTGATGGCCCC
CCGGGAGGGAGGAAGGGAGAGAAAGAATGAGAAACGAAAAGACAGCGAAC
AATTCTCTTAGCAACGAAGACGTGTATAGCCACTTTTGGTGCAATGGGAA
GACAAAATGAGGAAGCAGCGTGTCGGGTGGGAAGGTGGAAGGGAGGGACA
AAGGGGAGGAAGGGTTAGGAGCGACGTGTCGTCATGTTGATGCGCGCATT
TCGAAAGTGCTGCTCAACGTCCAAGGCATGGGTTCGTCATGCATCACCTT
CCCTCTCTTGCCCTCTCATTCGCCTTTCCCTCTGGACGCGATGGTGCGCG
GGCCAGAAGATGGAGCACTGGTGTTGTCAAATCAAGCACTTGATCAAACG
TAATACGAAGAAAGCTGTGCCCGTACGAGATGGTAAGGAGAGAGAGAGAA
TGACAAGGGAAAAAAGAACCCTGCCACCGAAACTCTGACAAC
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Coding sequence (CDS) from alignment at scaffold_10:71336..73677-

>mRNA_4233 ID=mRNA_4233|Name=jgi.p|Nanoce1779_2|588441|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_10:71336..73677- (Nannochloropsis oceanica)
ATGATCGACAAGATAACCAAGAAGCGGGTCATTACCGCCTCCGTGCTGAG
CGTCATCTTTGCCCTGTGCATCGCCATGACGGTCTTCGACAGCAAGGACG
GAAGCTTCATTATGGCGGATGACGACGCTTCCGTGATTGCCTACAATGAT
GCCTACCCGACTGACGAGGAGCCTAAGCTCCTGCCTGGTGACATAGCGTG
GATGCTCACCTCCACTGCTCTTGTCTTGCTCATGACTCCCGGCCTGGCCT
TCTTCTACGGCGGCATGGTGCGTGCCAAGAACGTGATTTCCACCTTGCTC
CAGTCGTTTATGGCCATGGGTGTTATCACGATCCTCTGGACTGTCGTCGG
TTTCTCCCTGGCCTTTGGTGACTCCCTCTCGGGCTACATGGGCAACCCCG
CCACCTTCCCCTTCTATAACAATGTGGGCGCAGCCGCCGATACTAACTTC
TCCGCCACGATTCCCCTGGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGC
TATTATTACCCCTGCTTTGATTTCGGGCGCCATTGCTGAGCGTGTCCGCT
TCACCTCTTACATCATCTTCATTATCCTCTTCTCCCTCTTCATCTACTGC
CCTCTGGCCCACATGACCTGGCACCCTGACGGTCTCCTTGCCAAGGCCGG
CATCCTGGATTTCGCCGGCGGCACCGTCGTACACATGTCCTCGGGTTACG
CGGCATTGGTTGGCTCGATCATCCTGGGGCCCCGTAAGGACGTGAAGAAG
ATGCAGCCCGCCAACATCCCCTTCGTCATGCTCGGAACTGCCCTCCTGTG
GTTTGGATGGTTTGGTTTCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGT
TAGCAGTGCAGGCTTTCTTGACCACCAACACGGCTACAGCGGCTGCCATG
CTTACGTGGGTTTTCGTGGACCACATCCGTGGGAGCAAGTCCACCGCCAT
GGGCGCATGTGTTGGGGCTGTGGTAGGGCTCGTCGTGATCACACCCGGCG
CCGGGTTCGTCACCATCGGTGGCTCGGCGTGCATGGGCATTATCGGCGCT
GTGATTTCCAACGTCGTGGCCCATTACTTTAACACCAAGGCGAACATTGA
TGATACGTTGGACGTGTGGCCTTGCCACGGCCTGGGCGGGACTGTTGGCA
TGGTCCTCACCTCGTGCTTCTGCACCAGCACCGTTAACCCAGACTCTCCG
GACGGCTTGTTCTACGGAGACCCCACCACGTTCTGGCACCATCTAGTGGC
GCTTGTGTGCATCATCCCTTTCATCATGGGCATGTCCTTTGTCTGCTACC
AGATCACGAACTTCATCTACCCTCTGCGTTGTGGTGAGAAATCCGAAAAG
CTCGGCCTGGACATGTCGCAGCACAAGGAGACCATCATCCTTGAGGATGA
GGGCATGGAGAAGCCCGTCGACGACTTGGATGCGTCCAGCCGCATTGAGC
TTGGCTCCATGTAA
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Synonyms
Publications