jgi.p|Nanoce1779_2|588440, mRNA_4232 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588440
Unique Name	mRNA_4232
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1502
Alignment location	scaffold_10:69834..71335 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588526
Track	FilteredModels2
ProteinId	588440

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:69834..71335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588440	gene_4232	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588440	mRNA_4232-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4232	CDS_4232	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:69834..71335+
coding sequence from alignment at scaffold_10:69834..71335+

mRNA sequence

>mRNA_4232 ID=mRNA_4232|Name=jgi.p|Nanoce1779_2|588440|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
TGGAGGGCGAGGAGGCCCCTTCCTAACCCAGCCTCTCTCCCTCCATAGAC
CTTTGTCGACACCAACGGCGGCATACCCATGCCAGGCACATTTACTTACG
TGCGAGGCCTAGGGGCGCGGATGTGGTTGGGGAAGAAAGGGAAAGAGAGG
TGAAGGCGGGCGATGCAGCACCACCAGCTCCAGCCTCTCTCCTTTCCTCC
CCCCTCCTTTCTTCTTCACCATAACGCCCTCGTCCTTTTGTTTGTATGCC
AATCGAACCATACAGCCACCTCGCTGACACTCAAACCAAACTTCACGTAT
ATCGCCATCATCTCCCACAGGAACGATGGGGGCTTACAAGTTCCTGGAGG
AGCTTTGGCGGAAGAAGCAGGCGGACTTGCTCCGCTTCCTGCTGCGCGTG
CGGGCTTGGGAGTACCGCCAACTACCCAAGATCTACAAGATGAACCGCCC
CACGCGCACGGACAAGGCCCACCGCCTCGGCTACAAGGCCAAGCAGGGCT
TCGTCATCTACCGTGTTGCTGTCCGACGGGGTGGGCGCAAGCGCCCCAAC
CCCAAGGGCATCGTGTACGGGAAGCCCAAGAATCAGGGGATTAACCAGCT
CAAGTGGGTGCGCAACCTCAAGTCAAAGGCAGAGGAGCGTGCCGGTCGCA
AGTTGGGAGGTCTGCGTGTGCTGAACTCCTACTGGGTGAATCAGGACGCG
ACGTACAAGTATTACGAGGTCATCCTGGTGGACCCCCAGCACAAGGCCAT
CCGCCGCGACGCCCGCGTAAACTGGATCGTCAACCCCACCCACAAGCACC
GCGAGCTCCGAGGCCTCACTTCCTCGGGCCGCTCTTCCCGAGGCCTGCGA
AAGCGTGGCCACCGCGCGCACAACATTATCGGGTCCTCTGCCTATGGCTC
TTGGAAGCGACGCAACACCCTCTCCCTCAAGCGATATCGTTAAAGGAGCG
CGGGGGAAAGGAATGGATGGAGGGAGGGAGGAACGGAGGGAGGAAGAAGA
GAGGAAGAAGAGAGGAAGAAGAGAATGGCTGGCATATACGTCGTGGGCAA
AGGCTGGTGGTGGTACTACTTTCTGCCGTTTTTCTGGGCATGTATGGCGA
AAGAACTGTGTCCCGCTCTTGTCTCTCTCCCCCTCTCTCTTCCCTCTCCT
CTGTTCTTTCGCCTTCCCTTTGCTGGTTTGTTTGGCTTTTCTTTTGAGGG
CCAGAGACTAGGAGTAGACAATTTATAACAAATGGGATGTGGCGCTGATT
TGTACGAGGGAAGGAAGATAAGTAAAGAAGCAAGACATACTATTCATTAA
TTTGTTCGTCGCTCACTTTCATTCTGACGTGAATTGCATAGAGTACAGAG
AGTGACGAGTGTAGAGAGGGAAGAGAGAGGATTGAGAGATGAGAAGAGAG
CGAGGGGTCGCTTTAAATGTGTGGACCACACGCGCGTGAGCAATAAATAC
TAGACATATCAACAATGCGCGTGGGAGAACAAAAGGCGAGCGTTGTTCTC
TC

protein sequence of jgi.p|Nanoce1779_2|588440

>mRNA_4232-protein ID=mRNA_4232-protein|Name=jgi.p|Nanoce1779_2|588440|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYKMNRPTRTDKAHR
LGYKAKQGFVIYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKS
KAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNW
IVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTLS
LKRYR*

mRNA from alignment at scaffold_10:69834..71335+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4232 ID=mRNA_4232|Name=jgi.p|Nanoce1779_2|588440|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp|location=Sequence derived from alignment at scaffold_10:69834..71335+ (Nannochloropsis oceanica)
TGGAGGGCGAGGAGGCCCCTTCCTAACCCAGCCTCTCTCCCTCCATAGAC
CTTTGTCGACACCAACGGCGGCATACCCATGCCAGGCACATTTACTTACG
TGCGAGGCCTAGGGGCGCGGATGTGGTTGGGGAAGAAAGGGAAAGAGAGG
TGAAGGCGGGCGATGCAGCACCACCAGCTCCAGCCTCTCTCCTTTCCTCC
CCCCTCCTTTCTTCTTCACCATAACGCCCTCGTCCTTTTGTTTGTATGCC
AATCGAACCATACAGCCACCTCGCTGACACTCAAACCAAACTTCACGTAT
ATCGCCATCATCTCCCACAGGAACGATGGGGGCTTACAAGTTCCTGGAGG
AGCTTTGGCGGAAGAAGCAGGCGGACTTGCTCCGCTTCCTGCTGCGCGTG
CGGGCTTGGGAGTACCGCCAACTACCCAAGATCTACAAGATGAACCGCCC
CACGCGCACGGACAAGGCCCACCGCCTCGGCTACAAGGCCAAGCAGGGCT
TCGTCATCTACCGTGTTGCTGTCCGACGGGGTGGGCGCAAGCGCCCCAAC
CCCAAGGGCATCGTGTACGGGAAGCCCAAGAATCAGGGGATTAACCAGCT
CAAGTGGGTGCGCAACCTCAAGTCAAAGGCAGAGGAGCGTGCCGGTCGCA
AGTTGGGAGGTCTGCGTGTGCTGAACTCCTACTGGGTGAATCAGGACGCG
ACGTACAAGTATTACGAGGTCATCCTGGTGGACCCCCAGCACAAGGCCAT
CCGCCGCGACGCCCGCGTAAACTGGATCGTCAACCCCACCCACAAGCACC
GCGAGCTCCGAGGCCTCACTTCCTCGGGCCGCTCTTCCCGAGGCCTGCGA
AAGCGTGGCCACCGCGCGCACAACATTATCGGGTCCTCTGCCTATGGCTC
TTGGAAGCGACGCAACACCCTCTCCCTCAAGCGATATCGTTAAAGGAGCG
CGGGGGAAAGGAATGGATGGAGGGAGGGAGGAACGGAGGGAGGAAGAAGA
GAGGAAGAAGAGAGGAAGAAGAGAATGGCTGGCATATACGTCGTGGGCAA
AGGCTGGTGGTGGTACTACTTTCTGCCGTTTTTCTGGGCATGTATGGCGA
AAGAACTGTGTCCCGCTCTTGTCTCTCTCCCCCTCTCTCTTCCCTCTCCT
CTGTTCTTTCGCCTTCCCTTTGCTGGTTTGTTTGGCTTTTCTTTTGAGGG
CCAGAGACTAGGAGTAGACAATTTATAACAAATGGGATGTGGCGCTGATT
TGTACGAGGGAAGGAAGATAAGTAAAGAAGCAAGACATACTATTCATTAA
TTTGTTCGTCGCTCACTTTCATTCTGACGTGAATTGCATAGAGTACAGAG
AGTGACGAGTGTAGAGAGGGAAGAGAGAGGATTGAGAGATGAGAAGAGAG
CGAGGGGTCGCTTTAAATGTGTGGACCACACGCGCGTGAGCAATAAATAC
TAGACATATCAACAATGCGCGTGGGAGAACAAAAGGCGAGCGTTGTTCTC
TC

Coding sequence (CDS) from alignment at scaffold_10:69834..71335+

>mRNA_4232 ID=mRNA_4232|Name=jgi.p|Nanoce1779_2|588440|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_10:69834..71335+ (Nannochloropsis oceanica)
ATGGGGGCTTACAAGTTCCTGGAGGAGCTTTGGCGGAAGAAGCAGGCGGA
CTTGCTCCGCTTCCTGCTGCGCGTGCGGGCTTGGGAGTACCGCCAACTAC
CCAAGATCTACAAGATGAACCGCCCCACGCGCACGGACAAGGCCCACCGC
CTCGGCTACAAGGCCAAGCAGGGCTTCGTCATCTACCGTGTTGCTGTCCG
ACGGGGTGGGCGCAAGCGCCCCAACCCCAAGGGCATCGTGTACGGGAAGC
CCAAGAATCAGGGGATTAACCAGCTCAAGTGGGTGCGCAACCTCAAGTCA
AAGGCAGAGGAGCGTGCCGGTCGCAAGTTGGGAGGTCTGCGTGTGCTGAA
CTCCTACTGGGTGAATCAGGACGCGACGTACAAGTATTACGAGGTCATCC
TGGTGGACCCCCAGCACAAGGCCATCCGCCGCGACGCCCGCGTAAACTGG
ATCGTCAACCCCACCCACAAGCACCGCGAGCTCCGAGGCCTCACTTCCTC
GGGCCGCTCTTCCCGAGGCCTGCGAAAGCGTGGCCACCGCGCGCACAACA
TTATCGGGTCCTCTGCCTATGGCTCTTGGAAGCGACGCAACACCCTCTCC
CTCAAGCGATATCGTTAA

Synonyms

Publications