Properties
| Property Name | Value |
|---|
| TranscriptId | 670731 |
| Track | FilteredModels2 |
| ProteinId | 670645 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:66178..67645 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4230 ID=mRNA_4230|Name=jgi.p|Nanoce1779_2|670645|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp
CTCCTGGGGCGAAAATTTACCCGGCGGTGCCATAGTACGTCCTTCCCCTT
GCTTCCCATTCCCATGACCTCTATGCGACGCCCGAATCTCTTCCACATCG
ATACAAACACTCCCCCTATTCATAGATTTGTCCTCTCATCCCCATAGCTT
GGCGCACCACGGCGACAACTTCACCGCCTAAATTTCTTCGGCGAGGCGGC
TTCCGTACGGCACACCACTCACCCAGCAGTACCCACACCATGGCCACGTT
CGCGCACGACGATGTTCTGGAGCAGCTAGCGGTACGCCTGGCCAGGGTTG
AGGCTGAAATTGTTGGTCCTGGCAACGAACACCTGGTTCGTTCCCTTGCG
GTCTCCTCTGCCGCAGCTGGAGGCGGAACGAGCTCGAGTGTGATATGGCG
ACGGCTCTTGCAGGTGACCGCGCGCGTGGAAACCAATGCCCGCAGGCTGG
GCGATGCTGCACTCCTGCGACAGCTGGAAAAGGATCTGTTCATGCCCTCC
CAGTCTTCCTCCTCTGCGACATCAGCAGGGGCAGGAGGAGGGAGGGACGA
GTTGTGCCTGCCTCCCCCATCGGGCACGGCCTTGCTTGGACTCCCCGAAA
AGGAGGCCCTGATATTGGGCCAAGAAGAGGAATTTCGACAAACTATGGCT
TACCTCCAAAACATCGACGAACTAAAAGCGTACATCACCGGGCCATTTCT
CGAGGGGAAGGGAGGGAAGGAGGAAGTGGCGTTGCATCAACGCCTGACAA
AACTTGAAATGGAGTTTTGGGACATGGAGGCGGTGGCTGTGGCGCTGGCG
AGGGAGATGGAAGAGATGCTGACGGTGTATGATGAGGTGGTGGAGTTGTT
GTCGAGAAAATGTGTTGAGTGGGAGGGAACGTTGGCGAGCATGGCGAGGA
GGAAGGAGAGGAGGAAGGAGAGGAGGGAGAGGGAGGGAGGAGGAGGAGGG
AGGAGAGAAGGGTGATGGGAGAAGAGAAAGTCTTTGTAAGTTATTTCGAT
GGTATACGATGGGACGAAAATTCTTTCTCTCCGTATTTTTCTTCTGTTTC
TTTGTTCGCTTGAACGCTATCAACACTTTTCCCCCCGGCTTGCTCCTCTC
CTTTCCTCCTTCCCTCCCTCTATCCCTCCATCTCTTTCTTCTTATCTACT
GATCCTGCTGCTTTACTCAGCCCCCTTCGGTCTCAAGGCCCTGACCGGGT
TACTCCTACCAGCATGACATGGTCGTGCCACACCACCAGAAGGCCCTTTA
CGTCAAGGGCGCCGTCATTATGAAGGAAGGCTCCCGGCCACCCTATCTCG
ATCCCTACTGATTCCCCCCTCCCTCAATCCTTCCTCGAAATCACGATTTT
GGGATCAAGCTTTCTCGAAAAAGAGAAGAGATGAAAGAGCTTGAAATGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACATGCTATCTACATTTCGT
GCATGTCCCCCCCCCTTC back to topprotein sequence of jgi.p|Nanoce1779_2|670645 >mRNA_4230-protein ID=mRNA_4230-protein|Name=jgi.p|Nanoce1779_2|670645|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MATFAHDDVLEQLAVRLARVEAEIVGPGNEHLVRSLAVSSAAAGGGTSSS
VIWRRLLQVTARVETNARRLGDAALLRQLEKDLFMPSQSSSSATSAGAGG
GRDELCLPPPSGTALLGLPEKEALILGQEEEFRQTMAYLQNIDELKAYIT
GPFLEGKGGKEEVALHQRLTKLEMEFWDMEAVAVALAREMEEMLTVYDEV
VELLSRKCVEWEGTLASMARRKERRKERREREGGGGGRREG* back to topmRNA from alignment at scaffold_10:66178..67645+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4230 ID=mRNA_4230|Name=jgi.p|Nanoce1779_2|670645|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at scaffold_10:66178..67645+ (Nannochloropsis oceanica)
CTCCTGGGGCGAAAATTTACCCGGCGGTGCCATAGTACGTCCTTCCCCTT
GCTTCCCATTCCCATGACCTCTATGCGACGCCCGAATCTCTTCCACATCG
ATACAAACACTCCCCCTATTCATAGATTTGTCCTCTCATCCCCATAGCTT
GGCGCACCACGGCGACAACTTCACCGCCTAAATTTCTTCGGCGAGGCGGC
TTCCGTACGGCACACCACTCACCCAGCAGTACCCACACCATGGCCACGTT
CGCGCACGACGATGTTCTGGAGCAGCTAGCGGTACGCCTGGCCAGGGTTG
AGGCTGAAATTGTTGGTCCTGGCAACGAACACCTGGTTCGTTCCCTTGCG
GTCTCCTCTGCCGCAGCTGGAGGCGGAACGAGCTCGAGTGTGATATGGCG
ACGGCTCTTGCAGGTGACCGCGCGCGTGGAAACCAATGCCCGCAGGCTGG
GCGATGCTGCACTCCTGCGACAGCTGGAAAAGGATCTGTTCATGCCCTCC
CAGTCTTCCTCCTCTGCGACATCAGCAGGGGCAGGAGGAGGGAGGGACGA
GTTGTGCCTGCCTCCCCCATCGGGCACGGCCTTGCTTGGACTCCCCGAAA
AGGAGGCCCTGATATTGGGCCAAGAAGAGGAATTTCGACAAACTATGGCT
TACCTCCAAAACATCGACGAACTAAAAGCGTACATCACCGGGCCATTTCT
CGAGGGGAAGGGAGGGAAGGAGGAAGTGGCGTTGCATCAACGCCTGACAA
AACTTGAAATGGAGTTTTGGGACATGGAGGCGGTGGCTGTGGCGCTGGCG
AGGGAGATGGAAGAGATGCTGACGGTGTATGATGAGGTGGTGGAGTTGTT
GTCGAGAAAATGTGTTGAGTGGGAGGGAACGTTGGCGAGCATGGCGAGGA
GGAAGGAGAGGAGGAAGGAGAGGAGGGAGAGGGAGGGAGGAGGAGGAGGG
AGGAGAGAAGGGTGATGGGAGAAGAGAAAGTCTTTGTAAGTTATTTCGAT
GGTATACGATGGGACGAAAATTCTTTCTCTCCGTATTTTTCTTCTGTTTC
TTTGTTCGCTTGAACGCTATCAACACTTTTCCCCCCGGCTTGCTCCTCTC
CTTTCCTCCTTCCCTCCCTCTATCCCTCCATCTCTTTCTTCTTATCTACT
GATCCTGCTGCTTTACTCAGCCCCCTTCGGTCTCAAGGCCCTGACCGGGT
TACTCCTACCAGCATGACATGGTCGTGCCACACCACCAGAAGGCCCTTTA
CGTCAAGGGCGCCGTCATTATGAAGGAAGGCTCCCGGCCACCCTATCTCG
ATCCCTACTGATTCCCCCCTCCCTCAATCCTTCCTCGAAATCACGATTTT
GGGATCAAGCTTTCTCGAAAAAGAGAAGAGATGAAAGAGCTTGAAATGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACATGCTATCTACATTTCGT
GCATGTCCCCCCCCCTTC back to topCoding sequence (CDS) from alignment at scaffold_10:66178..67645+ >mRNA_4230 ID=mRNA_4230|Name=jgi.p|Nanoce1779_2|670645|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_10:66178..67645+ (Nannochloropsis oceanica)
ATGGCCACGTTCGCGCACGACGATGTTCTGGAGCAGCTAGCGGTACGCCT
GGCCAGGGTTGAGGCTGAAATTGTTGGTCCTGGCAACGAACACCTGGTTC
GTTCCCTTGCGGTCTCCTCTGCCGCAGCTGGAGGCGGAACGAGCTCGAGT
GTGATATGGCGACGGCTCTTGCAGGTGACCGCGCGCGTGGAAACCAATGC
CCGCAGGCTGGGCGATGCTGCACTCCTGCGACAGCTGGAAAAGGATCTGT
TCATGCCCTCCCAGTCTTCCTCCTCTGCGACATCAGCAGGGGCAGGAGGA
GGGAGGGACGAGTTGTGCCTGCCTCCCCCATCGGGCACGGCCTTGCTTGG
ACTCCCCGAAAAGGAGGCCCTGATATTGGGCCAAGAAGAGGAATTTCGAC
AAACTATGGCTTACCTCCAAAACATCGACGAACTAAAAGCGTACATCACC
GGGCCATTTCTCGAGGGGAAGGGAGGGAAGGAGGAAGTGGCGTTGCATCA
ACGCCTGACAAAACTTGAAATGGAGTTTTGGGACATGGAGGCGGTGGCTG
TGGCGCTGGCGAGGGAGATGGAAGAGATGCTGACGGTGTATGATGAGGTG
GTGGAGTTGTTGTCGAGAAAATGTGTTGAGTGGGAGGGAACGTTGGCGAG
CATGGCGAGGAGGAAGGAGAGGAGGAAGGAGAGGAGGGAGAGGGAGGGAG
GAGGAGGAGGGAGGAGAGAAGGGTGA back to top
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