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Properties
| Property Name | Value |
|---|
| TranscriptId | 588514 |
| Track | FilteredModels2 |
| ProteinId | 588428 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:63576..65420 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4229 ID=mRNA_4229|Name=jgi.p|Nanoce1779_2|588428|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
AGGCTAGCTCGTTTTCCACCCCTCTGCCTCCACAACATCATCATGTCTGC
TGCCGTTGCTGCTGTCTCTGGGACAGAGGAGATTGCCATTGACATGAAGA
AGCCTGTGCCCAAGGTTCCTCTCGCTGCCAAGTTGGTCGTCGGAGCCGTG
GCGGGCGTAGTGGGCACCGTCTGTATCTTCCCCATTGACATGGTCAAAAC
GCGCCTACAAAGCGGGAACGCTCTCTACACCGGCCCCATCTCGGCCGCCA
AGGCTATCCTTAAGAGCGAAGGCGTGGCAGGTTTCTACCGTGGTCTGGGT
GCGAACCTGGCAGGCGTCACGCCCGAGAAGGCCATCAAGCTGGCAGCAAA
CGACTTGCTGCGTGAGGCGTTAGAACTCCCTGACGGGACCCTACCGCTGC
ACCGAGAGATGATGGCGGGCGCCGGCGCGGGTCTGTGTCAAGTGGTGGCG
ACGAATCCCATGGAGATCGTCAAAATCCGCATGCAGATGCAGGCTTTGCT
GCCAGCTGCGGAGCGCCAGGGGACCATGGATGTGGTCCGGGGACTAGGCT
TGAGGGGCATGTACCAAGGCACTACCGCCACGCTCTCGCGAGACATCCCG
TTCTCGTTGATCTTCTTCCCGCTCTACGCGAACTTGAAGAGGGCGTTTGC
GGATAAGACGACAGGGGATAATTCGATTGTGTCTCTGTTGGGGGCGGGGG
GGCTGGCGGGAGCGATGGGGTCGTGGGCAGCAACCCCGGCGGATGTGATC
AAGACGAGGTTGCAACTGGTGGGGGGGAAGGAGAAATATGGAGACATTGG
GAACTGTTTCAGGACCGTCCTGAAGGAGGAGGGCCCGACAGCCTTATTCA
AGGGCAGTGTGCCACGAATGTGTGTGGTTGCGCCTTTGTTCGGGATCGCC
CTCTTGTCGTTTGAGATGCAGAAGGAATACATGATCAAGAGCGGCATGTT
GGGCTAAGCGGAGAAGGAGGAGGAGGAGGAGAATACAGTGGTGGTGGTGG
TGGAGGAGGAGGAGGAGGGAGTCGATTTTTTCTACTATCCCGCTACTTCT
CTCTTCTCCCCTC back to topprotein sequence of jgi.p|Nanoce1779_2|588428 >mRNA_4229-protein ID=mRNA_4229-protein|Name=jgi.p|Nanoce1779_2|588428|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MSAAVAAVSGTEEIAIDMKKPVPKVPLAAKLVVGAVAGVVGTVCIFPIDM
VKTRLQSGNALYTGPISAAKAILKSEGVAGFYRGLGANLAGVTPEKAIKL
AANDLLREALELPDGTLPLHREMMAGAGAGLCQVVATNPMEIVKIRMQMQ
ALLPAAERQGTMDVVRGLGLRGMYQGTTATLSRDIPFSLIFFPLYANLKR
AFADKTTGDNSIVSLLGAGGLAGAMGSWAATPADVIKTRLQLVGGKEKYG
DIGNCFRTVLKEEGPTALFKGSVPRMCVVAPLFGIALLSFEMQKEYMIKS
GMLG* back to topmRNA from alignment at scaffold_10:63576..65420+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4229 ID=mRNA_4229|Name=jgi.p|Nanoce1779_2|588428|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp|location=Sequence derived from alignment at scaffold_10:63576..65420+ (Nannochloropsis oceanica)
AGGCTAGCTCGTTTTCCACCCCTCTGCCTCCACAACATCATCATGTCTGC
TGCCGTTGCTGCTGTCTCTGGGACAGAGGAGATTGCCATTGACATGAAGA
AGCCTGTGCCCAAGGTAAGAGAGATTTCCAGCCGGAAGCCAGAGGCGGGG
GTATTGGCCTGTCCTTCCTGCATCCCGTCGAGCACTTTTTACTCACGCTG
CTGTCTCTCCTCTCCACCCACCAGGTTCCTCTCGCTGCCAAGTTGGTCGT
CGGAGCCGTGGCGGGCGTAGTGGGCACCGTCTGTATCTTCCCCATTGGTA
CGTGTGAGGACAAGATGATACACGCCAACAAGAGGGGGTGTGCGGATGGC
ACAGGACACTATAACACGTGCATGCTGTGTCTACGCTCGGCCCAGGGTAC
TTCATGTTAAGCCTATTCATGGCCTCAAGACAGTCCTGTACTTTATCTCC
CATCTCCCTTTTCCTCATCTTAGATCGCTGCCCCACCGCTCGTCGTTCGC
TTGAGCATTTATTCTTCATCCCTTCTCATCCTAACATCATCACCGACCCC
CTTTCCTGCCACTCTCCTCTCCCCCCTCGAACAGACATGGTCAAAACGCG
CCTACAAAGCGGGAACGCTCTCTACACCGGCCCCATCTCGGCCGCCAAGG
CTATCCTTAAGAGCGAAGGCGTGGCAGGTTTCTACCGTGGTATGTGCTCC
GCGCCCTTTTCTCCATCTCTCTTCCCCGCTTCTCCGTCCTCCCGTGATCC
TGCTTGCTCAACTGTGGCTCTTTCTTTTACTCACTGATCTCTTCCCTCCC
CTTCCTCCCGCCCTCCCTCCATCCCTCCTTCCCAGGTCTGGGTGCGAACC
TGGCAGGCGTCACGCCCGAGAAGGCCATCAAGCTGGCAGCAAACGACTTG
CTGCGTGAGGCGTTAGAACTCCCTGACGGGACCCTACCGCTGCACCGAGA
GATGATGGCGGGCGCCGGTAAGACGGGAGGGATGAAGGAAAGGAGGGAGG
GAGGGAGGGAGAGGGCGAGGAAGGGCAGGAGGACGTTGGGAGATGGAGCG
GATTCTGCGTACAAATTACCACCCCCATCTTTTCGTTCTAAAAACGATTG
CATCATCTATCATCGCCCTCCCCCGCACTGCTTTTCCTGTCCTCAATATC
TCTCCTTCCCCTCTTATCTATCCTGACCCCTTCTACCCTTGCACCTACCC
TCGCAGGCGCGGGTCTGTGTCAAGTGGTGGCGACGAATCCCATGGAGATC
GTCAAAATCCGCATGCAGATGCAGGCTTTGCTGCCAGCTGCGGAGCGCCA
GGGGACCATGGATGTGGTCCGGGGACTAGGCTTGAGGGGCATGTACCAAG
GCACTACCGCCACGCTCTCGCGAGACATCCCGTTCTCGTTGATCTTCTTC
CCGCTCTACGCGAACTTGAAGAGGGCGTTTGCGGATAAGACGACAGGGGA
TAATTCGATTGTGTCTCTGTTGGGGGCGGGGGGGCTGGCGGGAGCGATGG
GGTCGTGGGCAGCAACCCCGGCGGATGTGATCAAGACGAGGTTGCAACTG
GTGGGGGGGAAGGAGAAATATGGAGACATTGGGAACTGTTTCAGGACCGT
CCTGAAGGAGGAGGGCCCGACAGCCTTATTCAAGGGCAGTGTGCCACGAA
TGTGTGTGGTTGCGCCTTTGTTCGGGATCGCCCTCTTGTCGTTTGAGATG
CAGAAGGAATACATGATCAAGAGCGGCATGTTGGGCTAAGCGGAGAAGGA
GGAGGAGGAGGAGAATACAGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGG
GAGTCGATTTTTTCTACTATCCCGCTACTTCTCTCTTCTCCCCTC back to topCoding sequence (CDS) from alignment at scaffold_10:63576..65420+ >mRNA_4229 ID=mRNA_4229|Name=jgi.p|Nanoce1779_2|588428|organism=Nannochloropsis oceanica|type=CDS|length=4575bp|location=Sequence derived from alignment at scaffold_10:63576..65420+ (Nannochloropsis oceanica)
ATGTCTGCTGCCGTTGCTGCTGTCTCTGGGACAGAGGAGATTGCCATTGA
CATGAAGAAGCCTGTGCCCAAGGTTCCTCTCGCTGCCAAGTTGGTCGTCG
GAGCCGTGGCGGGCGTAGTGGGCACCGTCTGTATCTTCCCCATTGACATG
GTCAAAACGCGCCTACAAAGCGGGAACGCTCTCTACACCGGCCCCATCTC
GGCCGCCAAGGCTATCCTTAAGAGCGAAGGCGTGGCAGGTTTCTACCGTG
GTCTGGGTGCGAACCTGGCAGGCGTCACGCCCGAGAAGGCCATCAAGCTG
GCAGCAAACGACTTGCTGCGTGAGGCGTTAGAACTCCCTGACGGGACCCT
ACCGCTGCACCGAGAGATGATGGCGGGCGCCGGCGCGGGTCTGTGTCAAG
TGGTGGCGACGAATCCCATGGAGATCGTCAAAATCCGCATGCAGATGCAG
GCTTTGCTGCCAGCTGCGGAGCGCCAGGGGACCATGGATGTGGTCCGGGG
ACTAGGCTTGAGGGGCATGTACCAAGGCACTACCGCCACGCTCTCGCGAG
ACATCCCGTTCTCGTTGATCTTCTTCCCGCTCTACGCGAACTTGAAGAGG
GCGTTTGCGGATAAGACGACAGGGGATAATTCGATTGTGTCTCTGTTGGG
GGCGGGGGGGCTGGCGGGAGCGATGGGGTCGTGGGCAGCAACCCCGGCGG
ATGTGATCAAGACGAGGTTGCAACTGGTGGGGGGGAAGGAGAAATATGGA
GACATTGGGAACTGTTTCAGGACCGTCCTGAAGGAGGAGGGCCCGACAGC
CTTATTCAAGGGCAGTGTGCCACGAATGTGTGTGGTTGCGCCTTTGTTCG
GGATCGCCCTCTTGTCGTTTGAGATGCAGAAGGAATACATGATCAAGAGC
GGCATGTTGGGCTAAATGTCTGCTGCCGTTGCTGCTGTCTCTGGGACAGA
GGAGATTGCCATTGACATGAAGAAGCCTGTGCCCAAGGTTCCTCTCGCTG
CCAAGTTGGTCGTCGGAGCCGTGGCGGGCGTAGTGGGCACCGTCTGTATC
TTCCCCATTGACATGGTCAAAACGCGCCTACAAAGCGGGAACGCTCTCTA
CACCGGCCCCATCTCGGCCGCCAAGGCTATCCTTAAGAGCGAAGGCGTGG
CAGGTTTCTACCGTGGTCTGGGTGCGAACCTGGCAGGCGTCACGCCCGAG
AAGGCCATCAAGCTGGCAGCAAACGACTTGCTGCGTGAGGCGTTAGAACT
CCCTGACGGGACCCTACCGCTGCACCGAGAGATGATGGCGGGCGCCGGCG
CGGGTCTGTGTCAAGTGGTGGCGACGAATCCCATGGAGATCGTCAAAATC
CGCATGCAGATGCAGGCTTTGCTGCCAGCTGCGGAGCGCCAGGGGACCAT
GGATGTGGTCCGGGGACTAGGCTTGAGGGGCATGTACCAAGGCACTACCG
CCACGCTCTCGCGAGACATCCCGTTCTCGTTGATCTTCTTCCCGCTCTAC
GCGAACTTGAAGAGGGCGTTTGCGGATAAGACGACAGGGGATAATTCGAT
TGTGTCTCTGTTGGGGGCGGGGGGGCTGGCGGGAGCGATGGGGTCGTGGG
CAGCAACCCCGGCGGATGTGATCAAGACGAGGTTGCAACTGGTGGGGGGG
AAGGAGAAATATGGAGACATTGGGAACTGTTTCAGGACCGTCCTGAAGGA
GGAGGGCCCGACAGCCTTATTCAAGGGCAGTGTGCCACGAATGTGTGTGG
TTGCGCCTTTGTTCGGGATCGCCCTCTTGTCGTTTGAGATGCAGAAGGAA
TACATGATCAAGAGCGGCATGTTGGGCTAAATGTCTGCTGCCGTTGCTGC
TGTCTCTGGGACAGAGGAGATTGCCATTGACATGAAGAAGCCTGTGCCCA
AGGTTCCTCTCGCTGCCAAGTTGGTCGTCGGAGCCGTGGCGGGCGTAGTG
GGCACCGTCTGTATCTTCCCCATTGACATGGTCAAAACGCGCCTACAAAG
CGGGAACGCTCTCTACACCGGCCCCATCTCGGCCGCCAAGGCTATCCTTA
AGAGCGAAGGCGTGGCAGGTTTCTACCGTGGTCTGGGTGCGAACCTGGCA
GGCGTCACGCCCGAGAAGGCCATCAAGCTGGCAGCAAACGACTTGCTGCG
TGAGGCGTTAGAACTCCCTGACGGGACCCTACCGCTGCACCGAGAGATGA
TGGCGGGCGCCGGCGCGGGTCTGTGTCAAGTGGTGGCGACGAATCCCATG
GAGATCGTCAAAATCCGCATGCAGATGCAGGCTTTGCTGCCAGCTGCGGA
GCGCCAGGGGACCATGGATGTGGTCCGGGGACTAGGCTTGAGGGGCATGT
ACCAAGGCACTACCGCCACGCTCTCGCGAGACATCCCGTTCTCGTTGATC
TTCTTCCCGCTCTACGCGAACTTGAAGAGGGCGTTTGCGGATAAGACGAC
AGGGGATAATTCGATTGTGTCTCTGTTGGGGGCGGGGGGGCTGGCGGGAG
CGATGGGGTCGTGGGCAGCAACCCCGGCGGATGTGATCAAGACGAGGTTG
CAACTGGTGGGGGGGAAGGAGAAATATGGAGACATTGGGAACTGTTTCAG
GACCGTCCTGAAGGAGGAGGGCCCGACAGCCTTATTCAAGGGCAGTGTGC
CACGAATGTGTGTGGTTGCGCCTTTGTTCGGGATCGCCCTCTTGTCGTTT
GAGATGCAGAAGGAATACATGATCAAGAGCGGCATGTTGGGCTAAATGTC
TGCTGCCGTTGCTGCTGTCTCTGGGACAGAGGAGATTGCCATTGACATGA
AGAAGCCTGTGCCCAAGGTTCCTCTCGCTGCCAAGTTGGTCGTCGGAGCC
GTGGCGGGCGTAGTGGGCACCGTCTGTATCTTCCCCATTGACATGGTCAA
AACGCGCCTACAAAGCGGGAACGCTCTCTACACCGGCCCCATCTCGGCCG
CCAAGGCTATCCTTAAGAGCGAAGGCGTGGCAGGTTTCTACCGTGGTCTG
GGTGCGAACCTGGCAGGCGTCACGCCCGAGAAGGCCATCAAGCTGGCAGC
AAACGACTTGCTGCGTGAGGCGTTAGAACTCCCTGACGGGACCCTACCGC
TGCACCGAGAGATGATGGCGGGCGCCGGCGCGGGTCTGTGTCAAGTGGTG
GCGACGAATCCCATGGAGATCGTCAAAATCCGCATGCAGATGCAGGCTTT
GCTGCCAGCTGCGGAGCGCCAGGGGACCATGGATGTGGTCCGGGGACTAG
GCTTGAGGGGCATGTACCAAGGCACTACCGCCACGCTCTCGCGAGACATC
CCGTTCTCGTTGATCTTCTTCCCGCTCTACGCGAACTTGAAGAGGGCGTT
TGCGGATAAGACGACAGGGGATAATTCGATTGTGTCTCTGTTGGGGGCGG
GGGGGCTGGCGGGAGCGATGGGGTCGTGGGCAGCAACCCCGGCGGATGTG
ATCAAGACGAGGTTGCAACTGGTGGGGGGGAAGGAGAAATATGGAGACAT
TGGGAACTGTTTCAGGACCGTCCTGAAGGAGGAGGGCCCGACAGCCTTAT
TCAAGGGCAGTGTGCCACGAATGTGTGTGGTTGCGCCTTTGTTCGGGATC
GCCCTCTTGTCGTTTGAGATGCAGAAGGAATACATGATCAAGAGCGGCAT
GTTGGGCTAAATGTCTGCTGCCGTTGCTGCTGTCTCTGGGACAGAGGAGA
TTGCCATTGACATGAAGAAGCCTGTGCCCAAGGTTCCTCTCGCTGCCAAG
TTGGTCGTCGGAGCCGTGGCGGGCGTAGTGGGCACCGTCTGTATCTTCCC
CATTGACATGGTCAAAACGCGCCTACAAAGCGGGAACGCTCTCTACACCG
GCCCCATCTCGGCCGCCAAGGCTATCCTTAAGAGCGAAGGCGTGGCAGGT
TTCTACCGTGGTCTGGGTGCGAACCTGGCAGGCGTCACGCCCGAGAAGGC
CATCAAGCTGGCAGCAAACGACTTGCTGCGTGAGGCGTTAGAACTCCCTG
ACGGGACCCTACCGCTGCACCGAGAGATGATGGCGGGCGCCGGCGCGGGT
CTGTGTCAAGTGGTGGCGACGAATCCCATGGAGATCGTCAAAATCCGCAT
GCAGATGCAGGCTTTGCTGCCAGCTGCGGAGCGCCAGGGGACCATGGATG
TGGTCCGGGGACTAGGCTTGAGGGGCATGTACCAAGGCACTACCGCCACG
CTCTCGCGAGACATCCCGTTCTCGTTGATCTTCTTCCCGCTCTACGCGAA
CTTGAAGAGGGCGTTTGCGGATAAGACGACAGGGGATAATTCGATTGTGT
CTCTGTTGGGGGCGGGGGGGCTGGCGGGAGCGATGGGGTCGTGGGCAGCA
ACCCCGGCGGATGTGATCAAGACGAGGTTGCAACTGGTGGGGGGGAAGGA
GAAATATGGAGACATTGGGAACTGTTTCAGGACCGTCCTGAAGGAGGAGG
GCCCGACAGCCTTATTCAAGGGCAGTGTGCCACGAATGTGTGTGGTTGCG
CCTTTGTTCGGGATCGCCCTCTTGTCGTTTGAGATGCAGAAGGAATACAT
GATCAAGAGCGGCATGTTGGGCTAA back to top
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