jgi.p|Nanoce1779_2|588422, mRNA_4227 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588422
Unique NamemRNA_4227
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1058
Alignment locationscaffold_10:57719..58776 +

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Properties
Property NameValue
TranscriptId588508
TrackFilteredModels2
ProteinId588422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:57719..58776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588422gene_4227Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588422mRNA_4227-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4227CDS_4227Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4227 ID=mRNA_4227|Name=jgi.p|Nanoce1779_2|588422|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp
ACAGGCGACTGTCCAGCTATTACTACGCTAGATGATGCGCCTCCTCATTT
TGCCATTCCTTCTCCTGACCCTGCTGCCTGCGACGGCCGAGGGTTTTGTC
CTGCGGTCACCATCACCCCCAGCATTATCATCACGAGCCTCCTCCCCCTC
CAATCCTCCTTCACCTGTGGTTCTCGACGCTGCTGCTGCTGCGGCGGCTA
GTTTGGGAGGGAATCAACCGCCACCTTCCATTCTGGCCGCACCCTTTTCC
GACGTCGTGCGGAACCGTTACTCCAACTCTCACTACGCGCATAAGTCCGT
GTCAAGAACCATCCTCAACGACCTCCTCCGCCTGACACAACGCTCTCCTT
CCTCCTTCAATACCCAGCCGTTCAAACTCATCGTCCTGCAAGACCCCGCC
CTTCGCGACAAGGTGGCCACGCATGCCATGCTCGGCGCCAACGGTGACCG
GGTGCGTAACGCCCCTGTCACTGTTATCTTTGCCGCCGACTTGGAAAGTG
GGCGGCTCATGCCGCGTGTCGTAGAGCTCTTTCGTCGAACAGGCACTTTC
CCAGAAGGCTTTCTCAAGCAAATTTCTTTTTTCGCGACCCTTTTCTCGAC
GGGGTATCGATTTTCTTTGGTTCGATGGTGTTTGTACTGGGGAAAGAGAA
TGTTTATGAACGTGGTGGGGACATTCAAACCAGTGCCACGCTTCGAGCGA
CCGGAGACCTGGGCAGCGAAGAATACGATGCTTGCCGCCATGACCTTTAT
GTTGGCTGCATCATCGCATGGACTGACGACGTGCCCCATGGAGGGGTTTG
ATGCCCGGCGGTTGAGGAGGTTGTTGAAGGTGCCTTCCCGGTACATAGTG
CCGGTGGTGGTTTGTGTGGGCTATGCCGCCACGCCTGCCGAGGAAGCGGC
ACAGGAAGGGAAGGAGGGGCATGCAGTGTCATCGAAGCAGCCCCCGGCAT
CATTGAGGTTTGATATGGACGAGGTGGTGTGTGAGGAGACGTACGGAGTC
CCGTGGAAGGGAGGCGCGTGAAGTCACGAAGATTGGAGGGAAGGAGGTAG
GAAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|588422

>mRNA_4227-protein ID=mRNA_4227-protein|Name=jgi.p|Nanoce1779_2|588422|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MMRLLILPFLLLTLLPATAEGFVLRSPSPPALSSRASSPSNPPSPVVLDA
AAAAAASLGGNQPPPSILAAPFSDVVRNRYSNSHYAHKSVSRTILNDLLR
LTQRSPSSFNTQPFKLIVLQDPALRDKVATHAMLGANGDRVRNAPVTVIF
AADLESGRLMPRVVELFRRTGTFPEGFLKQISFFATLFSTGYRFSLVRWC
LYWGKRMFMNVVGTFKPVPRFERPETWAAKNTMLAAMTFMLAASSHGLTT
CPMEGFDARRLRRLLKVPSRYIVPVVVCVGYAATPAEEAAQEGKEGHAVS
SKQPPASLRFDMDEVVCEETYGVPWKGGA*
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mRNA from alignment at scaffold_10:57719..58776+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4227 ID=mRNA_4227|Name=jgi.p|Nanoce1779_2|588422|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp|location=Sequence derived from alignment at scaffold_10:57719..58776+ (Nannochloropsis oceanica)
ACAGGCGACTGTCCAGCTATTACTACGCTAGATGATGCGCCTCCTCATTT
TGCCATTCCTTCTCCTGACCCTGCTGCCTGCGACGGCCGAGGGTTTTGTC
CTGCGGTCACCATCACCCCCAGCATTATCATCACGAGCCTCCTCCCCCTC
CAATCCTCCTTCACCTGTGGTTCTCGACGCTGCTGCTGCTGCGGCGGCTA
GTTTGGGAGGGAATCAACCGCCACCTTCCATTCTGGCCGCACCCTTTTCC
GACGTCGTGCGGAACCGTTACTCCAACTCTCACTACGCGCATAAGTCCGT
GTCAAGAACCATCCTCAACGACCTCCTCCGCCTGACACAACGCTCTCCTT
CCTCCTTCAATACCCAGCCGTTCAAACTCATCGTCCTGCAAGACCCCGCC
CTTCGCGACAAGGTGGCCACGCATGCCATGCTCGGCGCCAACGGTGACCG
GGTGCGTAACGCCCCTGTCACTGTTATCTTTGCCGCCGACTTGGAAAGTG
GGCGGCTCATGCCGCGTGTCGTAGAGCTCTTTCGTCGAACAGGCACTTTC
CCAGAAGGCTTTCTCAAGCAAATTTCTTTTTTCGCGACCCTTTTCTCGAC
GGGGTATCGATTTTCTTTGGTTCGATGGTGTTTGTACTGGGGAAAGAGAA
TGTTTATGAACGTGGTGGGGACATTCAAACCAGTGCCACGCTTCGAGCGA
CCGGAGACCTGGGCAGCGAAGAATACGATGCTTGCCGCCATGACCTTTAT
GTTGGCTGCATCATCGCATGGACTGACGACGTGCCCCATGGAGGGGTTTG
ATGCCCGGCGGTTGAGGAGGTTGTTGAAGGTGCCTTCCCGGTACATAGTG
CCGGTGGTGGTTTGTGTGGGCTATGCCGCCACGCCTGCCGAGGAAGCGGC
ACAGGAAGGGAAGGAGGGGCATGCAGTGTCATCGAAGCAGCCCCCGGCAT
CATTGAGGTTTGATATGGACGAGGTGGTGTGTGAGGAGACGTACGGAGTC
CCGTGGAAGGGAGGCGCGTGAAGTCACGAAGATTGGAGGGAAGGAGGTAG
GAAGGGAG
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Coding sequence (CDS) from alignment at scaffold_10:57719..58776+

>mRNA_4227 ID=mRNA_4227|Name=jgi.p|Nanoce1779_2|588422|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_10:57719..58776+ (Nannochloropsis oceanica)
ATGATGCGCCTCCTCATTTTGCCATTCCTTCTCCTGACCCTGCTGCCTGC
GACGGCCGAGGGTTTTGTCCTGCGGTCACCATCACCCCCAGCATTATCAT
CACGAGCCTCCTCCCCCTCCAATCCTCCTTCACCTGTGGTTCTCGACGCT
GCTGCTGCTGCGGCGGCTAGTTTGGGAGGGAATCAACCGCCACCTTCCAT
TCTGGCCGCACCCTTTTCCGACGTCGTGCGGAACCGTTACTCCAACTCTC
ACTACGCGCATAAGTCCGTGTCAAGAACCATCCTCAACGACCTCCTCCGC
CTGACACAACGCTCTCCTTCCTCCTTCAATACCCAGCCGTTCAAACTCAT
CGTCCTGCAAGACCCCGCCCTTCGCGACAAGGTGGCCACGCATGCCATGC
TCGGCGCCAACGGTGACCGGGTGCGTAACGCCCCTGTCACTGTTATCTTT
GCCGCCGACTTGGAAAGTGGGCGGCTCATGCCGCGTGTCGTAGAGCTCTT
TCGTCGAACAGGCACTTTCCCAGAAGGCTTTCTCAAGCAAATTTCTTTTT
TCGCGACCCTTTTCTCGACGGGGTATCGATTTTCTTTGGTTCGATGGTGT
TTGTACTGGGGAAAGAGAATGTTTATGAACGTGGTGGGGACATTCAAACC
AGTGCCACGCTTCGAGCGACCGGAGACCTGGGCAGCGAAGAATACGATGC
TTGCCGCCATGACCTTTATGTTGGCTGCATCATCGCATGGACTGACGACG
TGCCCCATGGAGGGGTTTGATGCCCGGCGGTTGAGGAGGTTGTTGAAGGT
GCCTTCCCGGTACATAGTGCCGGTGGTGGTTTGTGTGGGCTATGCCGCCA
CGCCTGCCGAGGAAGCGGCACAGGAAGGGAAGGAGGGGCATGCAGTGTCA
TCGAAGCAGCCCCCGGCATCATTGAGGTTTGATATGGACGAGGTGGTGTG
TGAGGAGACGTACGGAGTCCCGTGGAAGGGAGGCGCGTGA
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Synonyms
Publications