jgi.p|Nanoce1779_2|630121, mRNA_4225 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630121
Unique Name	mRNA_4225
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1809
Alignment location	scaffold_10:52789..55532 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630207
Track	FilteredModels2
ProteinId	630121

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:52789..55532 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630121	gene_4225	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630121	mRNA_4225-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4225	CDS_4225	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:52789..55532+
coding sequence from alignment at scaffold_10:52789..55532+

mRNA sequence

>mRNA_4225 ID=mRNA_4225|Name=jgi.p|Nanoce1779_2|630121|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp
ACAGGATACAAGCCACGACAAGCAAGAAAACCCTTTTCGCGTCCCATCAG
CGCACGACCCCCCCCCCCCGCGCAACGCAAAGCACACCATGGAAGCCTTT
CTCACCGCCCTCGGGGACCCGTCCATTCCGTGGGACGACACCCAACTACG
CACCTTGCGATCATTGGCCATGCAAAGAGCAGGCCTGCCAGCCCATGCCC
GAGGCCTGGCCTGGCGTTTCTTCCTCAATGTCCTTCCTCCTACACGGGAA
GGCGGCGCGTCTATTGCTCGTGACAAGGCGGGGGAATGGCCTGCACGGCT
ACAGGCAGCGAGGAGGCAGTATGCGGTGTGGAAGGGACAATTGTACCCGG
ATTTTAATCGGGTGAGCAAGGAGGGTGATGATGACCCGTTGTCGGCCTTA
ACGATGACGGCAGGCAAGGAGGAGGAGGAAGAAGACGACGGAGGGAATGC
CAATGATGAGGAAGGGGAGAAAGATGGTGGTAGTGAAGGGAGGAGGAGGA
GACGGACGAAATGTGGGGGGGCGTGGAAGAGATACTACGAAGGGATGGAG
TTGCTGGATGAGATCAAACGGGATTTGACGAGGCTTTACCCGAGTGGCGT
GGACGAGGCGCATTTTATGGAGGGTAAGACACAGGAGGTGTTGTTGGCGG
TGTTGTGTGTTTGGAGCACGTTGCACAAGGCCACCAGTTACAGGCAGGGG
ATGCATGAGGTATTGAGTGTGTTGTTTTTCGCATTGCAGGAAGAGCATGC
CTGTTCAAGGGGGGGAGGAAGGGAGGCACTGCCGCCTTCTTTGGCTTACA
TCACGGACCCTCAGTATTTGGAGCATGACGCCTTCCTCCTCTTTGATCGT
CTGATGGTTGAACTTGAACCATTGTACTATGTGGAGCGTCCCCGTGCCTA
TTCCTCCACCTCGTCCTCCTTCCCTTCCTCCTCCCCCCGGGACGAATCCC
CTGTTGTCCGCCTCTCGCACCGTTTGCAAGGCCCGGTACTCCAGCAAGCT
GACCCGGAAGTATGGACGAGCTTGAATACGGTGCATGAGGTTGCACCGCA
ATTGTACGGCATTAAGTGGACACGGTTATTGTTTGCGAGAGAATTCGCGA
TGAGGGACGTATTACAGCTGTGGGACTGCATGTTCGCCATGATGGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGAAGG
GAAGGGGGAAGGGAGGTTGTTGGGCGTGGTAGAGTGCGTGGGGGTGGCAA
TGATGGTGATGGTGCGATCGGCGTTGCTGACCGACGAAGTGTCGGTGGCC
TTGAGGACATTGATGTCGTTCGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGTGGACGTGGGGGAGATTGTGGCGCTGGCCCGCTTGCTCAAGA
GGAAGGATTGGCCAGGAAATGAGCGGTAGGACACCAGGTAGTGTCCCTAT
TAGTCGTCCAGGAGCAGGAGCAGCAGCGGCATCGGCACAATCGTCATTGA
AAGCCCTTTCGGAGCACACCTCCAACCCCCCTCCAACCACAATCGATGCC
ACCAGCAGCAGCGGCAGCAACGACAGCAACAACAACAAGAGCATGAGGGT
ATCATCGACAGTGGACAGCAGCAGCATTTCCACCCCTAACGTTCCGCAGA
AAAGCAAGGTGGCACAAGCAGCACTCAGTTCCCTTCTGGATGGTGAGGAC
GGACAGGGTGACGAGAACGACCAGAAGGGCAGCAGTAGCAGCAGTAGTAG
CGGCAGCAGCGGCAGCAGCCATAGGCGCAGGCTCTCGGCGGGGTTTGGTG
GTGATGGAG

protein sequence of jgi.p|Nanoce1779_2|630121

>mRNA_4225-protein ID=mRNA_4225-protein|Name=jgi.p|Nanoce1779_2|630121|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MEAFLTALGDPSIPWDDTQLRTLRSLAMQRAGLPAHARGLAWRFFLNVLP
PTREGGASIARDKAGEWPARLQAARRQYAVWKGQLYPDFNRVSKEGDDDP
LSALTMTAGKEEEEEDDGGNANDEEGEKDGGSEGRRRRRTKCGGAWKRYY
EGMELLDEIKRDLTRLYPSGVDEAHFMEGKTQEVLLAVLCVWSTLHKATS
YRQGMHEVLSVLFFALQEEHACSRGGGREALPPSLAYITDPQYLEHDAFL
LFDRLMVELEPLYYVERPRAYSSTSSSFPSSSPRDESPVVRLSHRLQGPV
LQQADPEVWTSLNTVHEVAPQLYGIKWTRLLFAREFAMRDVLQLWDCMFA
MMGEEEEEEEEEEEEEGEEEGKGEGRLLGVVECVGVAMMVMVRSALLTDE
VSVALRTLMSFEGGREGGREGGRVDVGEIVALARLLKRKDWPGNER*

mRNA from alignment at scaffold_10:52789..55532+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4225 ID=mRNA_4225|Name=jgi.p|Nanoce1779_2|630121|organism=Nannochloropsis oceanica|type=mRNA|length=2744bp|location=Sequence derived from alignment at scaffold_10:52789..55532+ (Nannochloropsis oceanica)
ACAGGATACAAGCCACGACAAGCAAGAAAACCCTTTTCGCGTCCCATCAG
CGCACGACCCCCCCCCCCCGCGCAACGCAAAGCACACCATGGAAGCCTTT
CTCACCGCCCTCGGGGACCCGTCCATTCCGTGGGACGACACCCAACTACG
CACCTTGCGATCATTGGCCATGCAAAGAGCAGGCCTGCCAGCCCATGCCC
GAGGCCTGGCCTGGCGTTTCTTCCTCAATGTCCTTCCTCCTACACGGGAA
GGCGGCGCGTCTATTGCTCGTGACAAGGCGGGGGAATGGCCTGCACGGCT
ACAGGCAGCGAGGAGGCAGTATGCGGTGTGGAAGGGACAATTGTACCCGG
ATTTTAATCGGGTGAGCAAGGAGGGTGATGATGACCCGTTGTCGGCCTTA
ACGATGACGGCAGGCAAGGAGGAGGAGGAAGAAGACGACGGAGGGAATGC
CAATGATGAGGAAGGGGAGAAAGATGGTGGTAGTGAAGGGAGGAGGAGGA
GACGGACGAAATGTGGGGGGGCGTGGAAGAGATACTACGAAGGGATGGAG
TTGCTGGATGAGATCAAACGGGATTTGACGAGGCTTTACCCGAGTGGCGT
GGACGAGGCGCATTTTATGGAGGGTAAGACACAGGAGGTGTTGTTGGCGG
TGTTGTGTGTTTGGAGCACGTTGCACAAGGCCACCAGTTACAGGCAGGGG
ATGCATGAGGTATTGAGTGTGTTGTTTTTCGCATTGCAGGAAGAGCATGC
CTGTTCAAGGGGGGGAGGAAGGGAGGCACTGCCGCCTTCTTTGGCTTACA
TCACGGACCCTCAGTATTTGGAGCATGACGCCTTCCTCCTCTTTGATCGT
CTGATGGTTGAACTTGAACCATTGTACTATGTGGAGCGTCCCCGTGCCTA
TTCCTCCACCTCGTCCTCCTTCCCTTCCTCCTCCCCCCGGGACGAATCCC
CTGTTGTCCGCCTCTCGCACCGTTTGCAAGGCCCGGTACTCCAGCAAGCT
GACCCGGAAGTATGGACGAGCTTGAATACGGTGCATGAGGTTGCACCGCA
ATTGTACGGCATTAAGTGGACACGGTTATTGTTTGCGAGAGAATTCGCGA
TGAGGGACGTATTACAGCTGTGGGACTGCATGTTCGCCATGATGGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGAAGG
GAAGGGGGAAGGGAGGTTGTTGGGCGTGGTAGAGTGCGTGGGGGTGGCAA
TGATGGTGATGGTGCGATCGGCGTTGCTGACCGACGAAGTGTCGGTGGCC
TTGAGGACATTGATGTCGTTCGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGTGGACGTGGGGGAGATTGTGGCGCTGGCCCGCTTGCTCAAGA
GGAAGGATTGGCCAGGTGTCGTGCAGTTCCGTCGGGCTTTGATGGCAGCC
GCTCCATCAGCAATTCCCTTTTCCTCTGCCCCTTCCTCTTCTCATCTACT
ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGCGTTCGCTCCACTTACATCCCCTCCTCCTCGTCTGTCCTACCACGT
ACCCCCTCCTCTTCCTCCTCCTCTTCCTCCGCCCACCCTGTGCCTTCCTG
GCTCAAGAGCTTCGGGGCCACCTCAACCTCCTCCGGTCTCCCCCCTCTCC
CTCCTCCCCCCCCTTCCTCCCTCCCTGCCTTCCTCCCTCGAGTAGGGCGG
TCAGTAGCAGCAGCGGCCCAGGATGTAGTGCATGGAATAGCGGACCTCTC
CTTCCTACGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGGGGAA
GGGGGGGATTTCTGGGGGGGGGTATGGAAGAGGAGGCAAGGCAGCGGCAG
CAGCAGCTGGAGCGAGTGTTGCTGCAGCAGCAGTGGCAGCAGCAGTGGCA
GCAGCAGTGGCAGCAGCAGTGGCAGCAGCAGCAGGAACATGCGGTGCACG
ACCTAAGCGAAGCGGTCGAGGTGCTAGGGAAGACATTGGGGAAGGTGGTA
ACGAAGGAGGGAGGGGAGGGAGAAGGGAGGGAGGAGGGGGAGGAAGAGGG
AGGGGTATGGGCAGCTTTTCTGAGGGTGCAATCTCTGGTACAGACCTTAA
TAAGACAGGGAGGAATCGCAGAACCACCTCAGGCAAGAATGATGGAAGGG
AGGGAGGGAAGCAGGGAGGGCATGGAGAAGGAGGAAGAGGAGGAAGAGGA
AGAGGTGGAAATCCCAAGGGGTTTGCAGCAGCACACGTACGTTGGTACTG
CGGAGGGGTTGACAACTTCTGTCTCACTGATATCGTCATCATTTGCTGAG
GAAATGAGCGGTAGGACACCAGGTAGTGTCCCTATTAGTCGTCCAGGAGC
AGGAGCAGCAGCGGCATCGGCACAATCGTCATTGAAAGCCCTTTCGGAGC
ACACCTCCAACCCCCCTCCAACCACAATCGATGCCACCAGCAGCAGCGGC
AGCAACGACAGCAACAACAACAAGAGCATGAGGGTATCATCGACAGTGGA
CAGCAGCAGCATTTCCACCCCTAACGTTCCGCAGAAAAGCAAGGTGGCAC
AAGCAGCACTCAGTTCCCTTCTGGATGGTGAGGACGGACAGGGTGACGAG
AACGACCAGAAGGGCAGCAGTAGCAGCAGTAGTAGCGGCAGCAGCGGCAG
CAGCCATAGGCGCAGGCTCTCGGCGGGGTTTGGTGGTGATGGAG

Coding sequence (CDS) from alignment at scaffold_10:52789..55532+

>mRNA_4225 ID=mRNA_4225|Name=jgi.p|Nanoce1779_2|630121|organism=Nannochloropsis oceanica|type=CDS|length=2682bp|location=Sequence derived from alignment at scaffold_10:52789..55532+ (Nannochloropsis oceanica)
ATGGAAGCCTTTCTCACCGCCCTCGGGGACCCGTCCATTCCGTGGGACGA
CACCCAACTACGCACCTTGCGATCATTGGCCATGCAAAGAGCAGGCCTGC
CAGCCCATGCCCGAGGCCTGGCCTGGCGTTTCTTCCTCAATGTCCTTCCT
CCTACACGGGAAGGCGGCGCGTCTATTGCTCGTGACAAGGCGGGGGAATG
GCCTGCACGGCTACAGGCAGCGAGGAGGCAGTATGCGGTGTGGAAGGGAC
AATTGTACCCGGATTTTAATCGGGTGAGCAAGGAGGGTGATGATGACCCG
TTGTCGGCCTTAACGATGACGGCAGGCAAGGAGGAGGAGGAAGAAGACGA
CGGAGGGAATGCCAATGATGAGGAAGGGGAGAAAGATGGTGGTAGTGAAG
GGAGGAGGAGGAGACGGACGAAATGTGGGGGGGCGTGGAAGAGATACTAC
GAAGGGATGGAGTTGCTGGATGAGATCAAACGGGATTTGACGAGGCTTTA
CCCGAGTGGCGTGGACGAGGCGCATTTTATGGAGGGTAAGACACAGGAGG
TGTTGTTGGCGGTGTTGTGTGTTTGGAGCACGTTGCACAAGGCCACCAGT
TACAGGCAGGGGATGCATGAGGTATTGAGTGTGTTGTTTTTCGCATTGCA
GGAAGAGCATGCCTGTTCAAGGGGGGGAGGAAGGGAGGCACTGCCGCCTT
CTTTGGCTTACATCACGGACCCTCAGTATTTGGAGCATGACGCCTTCCTC
CTCTTTGATCGTCTGATGGTTGAACTTGAACCATTGTACTATGTGGAGCG
TCCCCGTGCCTATTCCTCCACCTCGTCCTCCTTCCCTTCCTCCTCCCCCC
GGGACGAATCCCCTGTTGTCCGCCTCTCGCACCGTTTGCAAGGCCCGGTA
CTCCAGCAAGCTGACCCGGAAGTATGGACGAGCTTGAATACGGTGCATGA
GGTTGCACCGCAATTGTACGGCATTAAGTGGACACGGTTATTGTTTGCGA
GAGAATTCGCGATGAGGGACGTATTACAGCTGTGGGACTGCATGTTCGCC
ATGATGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGG
AGAGGAGGAAGGGAAGGGGGAAGGGAGGTTGTTGGGCGTGGTAGAGTGCG
TGGGGGTGGCAATGATGGTGATGGTGCGATCGGCGTTGCTGACCGACGAA
GTGTCGGTGGCCTTGAGGACATTGATGTCGTTCGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGTGGACGTGGGGGAGATTGTGGCGCTGGCCC
GCTTGCTCAAGAGGAAGGATTGGCCAGGAAATGAGCGGTAGATGGAAGCC
TTTCTCACCGCCCTCGGGGACCCGTCCATTCCGTGGGACGACACCCAACT
ACGCACCTTGCGATCATTGGCCATGCAAAGAGCAGGCCTGCCAGCCCATG
CCCGAGGCCTGGCCTGGCGTTTCTTCCTCAATGTCCTTCCTCCTACACGG
GAAGGCGGCGCGTCTATTGCTCGTGACAAGGCGGGGGAATGGCCTGCACG
GCTACAGGCAGCGAGGAGGCAGTATGCGGTGTGGAAGGGACAATTGTACC
CGGATTTTAATCGGGTGAGCAAGGAGGGTGATGATGACCCGTTGTCGGCC
TTAACGATGACGGCAGGCAAGGAGGAGGAGGAAGAAGACGACGGAGGGAA
TGCCAATGATGAGGAAGGGGAGAAAGATGGTGGTAGTGAAGGGAGGAGGA
GGAGACGGACGAAATGTGGGGGGGCGTGGAAGAGATACTACGAAGGGATG
GAGTTGCTGGATGAGATCAAACGGGATTTGACGAGGCTTTACCCGAGTGG
CGTGGACGAGGCGCATTTTATGGAGGGTAAGACACAGGAGGTGTTGTTGG
CGGTGTTGTGTGTTTGGAGCACGTTGCACAAGGCCACCAGTTACAGGCAG
GGGATGCATGAGGTATTGAGTGTGTTGTTTTTCGCATTGCAGGAAGAGCA
TGCCTGTTCAAGGGGGGGAGGAAGGGAGGCACTGCCGCCTTCTTTGGCTT
ACATCACGGACCCTCAGTATTTGGAGCATGACGCCTTCCTCCTCTTTGAT
CGTCTGATGGTTGAACTTGAACCATTGTACTATGTGGAGCGTCCCCGTGC
CTATTCCTCCACCTCGTCCTCCTTCCCTTCCTCCTCCCCCCGGGACGAAT
CCCCTGTTGTCCGCCTCTCGCACCGTTTGCAAGGCCCGGTACTCCAGCAA
GCTGACCCGGAAGTATGGACGAGCTTGAATACGGTGCATGAGGTTGCACC
GCAATTGTACGGCATTAAGTGGACACGGTTATTGTTTGCGAGAGAATTCG
CGATGAGGGACGTATTACAGCTGTGGGACTGCATGTTCGCCATGATGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGAGGA
AGGGAAGGGGGAAGGGAGGTTGTTGGGCGTGGTAGAGTGCGTGGGGGTGG
CAATGATGGTGATGGTGCGATCGGCGTTGCTGACCGACGAAGTGTCGGTG
GCCTTGAGGACATTGATGTCGTTCGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGTGGACGTGGGGGAGATTGTGGCGCTGGCCCGCTTGCTCA
AGAGGAAGGATTGGCCAGGAAATGAGCGGTAG

Synonyms

Publications