jgi.p|Nanoce1779_2|639002, mRNA_4224 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|639002
Unique Name	mRNA_4224
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	783
Alignment location	scaffold_10:50527..52155 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	639088
Track	FilteredModels2
ProteinId	639002

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:50527..52155 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639002	gene_4224	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639002	mRNA_4224-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4224	CDS_4224	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:50527..52155+
coding sequence from alignment at scaffold_10:50527..52155+

mRNA sequence

>mRNA_4224 ID=mRNA_4224|Name=jgi.p|Nanoce1779_2|639002|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
ATGACGCAGGGCTATTTCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCG
ATGCATGAATGCGCACCGCCTTTCCAACCGTGGCGCCGCCCTCCCCCGTC
TCCGCCTCCCCCCCCTTCCCTCTTCCATCTCGGATTTTCTGGACGATGAC
AAGGACTCTGTCGCTCGCCCTGCCCCTTCCTCCCCCTCCTCCTCCTCCTC
TCCAGCGTCTTCCACCCCTCAGGATGACAACTTGGAGTATTTCGTCAGAT
GCGGTCGCTGCAATGCCGCCTATTCCGTGCCTGCGGATCTGGTGAAGCCG
GAGGGAGGCCGAGTGAAGTGCGAGGTGTGTGGACATACCTGGTTCCAGGC
CTCGAACCGGCTGCAGGTGCTGAGCCAGGGCTACGTGCTCAAGGACTACC
CCGATGACCTCAGGGAGAAAGTGGCCGAGAATGTGCGCAACAACCGCCAT
CCCCTCGACACCAGTGCCTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAA
CTTGCCTTTCTCGATGGGCGAGGAGGACATCAAGAACATGTTCGGGGCGC
ACGGTGGCGTCGTTTCGGTAACCATCGTCAAGGATCAGCTCAACCGGTCC
AAAGGTTTTGGTTTCGTCGAGATGGCGGTCAAGGAGGAAGGCGAGGAGGC
CATTGCGGCTTTAGATGGACGTGAGATTGACGGACGCCCCATTAATGTAC
GACTAGGCACGAGCAAGGCACAGCCCCGTATGCGCAAGGACCGTACGATG
GCCAAGAAGGAGGGAGGGGAGCTGTTGTCTTAG

protein sequence of jgi.p|Nanoce1779_2|639002

>mRNA_4224-protein ID=mRNA_4224-protein|Name=jgi.p|Nanoce1779_2|639002|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MTQGYFFPSPLAPMQKRCMNAHRLSNRGAALPRLRLPPLPSSISDFLDDD
KDSVARPAPSSPSSSSSPASSTPQDDNLEYFVRCGRCNAAYSVPADLVKP
EGGRVKCEVCGHTWFQASNRLQVLSQGYVLKDYPDDLREKVAENVRNNRH
PLDTSASKGAISVFVGNLPFSMGEEDIKNMFGAHGGVVSVTIVKDQLNRS
KGFGFVEMAVKEEGEEAIAALDGREIDGRPINVRLGTSKAQPRMRKDRTM
AKKEGGELLS*

mRNA from alignment at scaffold_10:50527..52155+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4224 ID=mRNA_4224|Name=jgi.p|Nanoce1779_2|639002|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp|location=Sequence derived from alignment at scaffold_10:50527..52155+ (Nannochloropsis oceanica)
ATGACGCAGGGCTATTTCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCG
ATGCATGAATGCGCACCGCCTTTCCAACCGTGGTACGTGGCGTGGCCACT
CTAGGTCGAGTCCTTCCTTCCTTCCTTTCTTTCTTTCCTTCCCTCCTGCT
CGAGGTAGTAGGAGGATGGCATGCGAGGACGCGACGGCCAGCTCATCATA
AGCACTAGCAATCACACTCTCCTACCTGTGTATCCTACTCTACCCTCATC
CACCTCACCCTCAATTAACTCCCTTATCCTACCTGTTTCTTCCCTTCCAA
TCAACCCCGTCCCCATCGTCACAGGCGCCGCCCTCCCCCGTCTCCGCCTC
CCCCCCCTTCCCTCTTCCATCTCGGATTTTCTGGACGATGACAAGGACTC
TGTCGCTCGCCCTGCCCCTTCCTCCCCCTCCTCCTCCTCCTCTCCAGCGT
CTTCCACCCCTCAGGATGACAACTTGGAGTATTTCGTCAGATGCGGTCGC
TGCAATGCCGCCTATTCCGTGCCTGCGGATCTGGTGAAGCCGGAGGGAGG
CCGAGTGAAGTGCGAGGTGTGTGGACATACCTGGTTCCAGGCCTCGAACC
GGCTGCAGGTGCTGAGCCAGGGCTACGTGCTCAAGGTGAGGAGCAAGCGA
GGGAGGGAGGGAAGGAAGGGCGACAGGAGAGTTGGAGAAACGGAGATCAC
AGGGGCTAAACTAAGTTCAATGACATGTATAGGTCTACTCACTCATCGAT
CTTCCCCTCCCTTCCTCTCTTCCTCAATCTTCCCCTCCCTTCCTCTCTTC
CCCAAGGACTACCCCGATGACCTCAGGGAGAAAGTGGCCGAGAATGTGCG
CAACAACCGCCATCCCCTCGACACCAGTGCCTCCAAGGGCGCCATCTCTG
TGTTCGTGGGGAACTTGCCTTTCTCGGTACGTGTGATTGGCTGAAACGGA
GGGAGGGTGGGAGAGAGGGAGGGAGGAAGGGAGGGAAAGCGTAGTGGGGA
TTTCATGCTTGGGAAGTGGTTGCCTTGTGAAGGCGATCATTTCTCGCGCA
AGGAGCACCTTAATCTTGCCTCTCAATCCCAGACTAGAATGATAATTGTA
CCAATGGTAAAGCTTATAACACTATCGGTGACTCGGATCATACCGACTTA
TTTCACTTCCTTCCCCTCCCTCCCATCCTCCCTCCCTACGCCTGCCTTCT
AGATGGGCGAGGAGGACATCAAGAACATGTTCGGGGCGCACGGTGGCGTC
GTTTCGGTAACCATCGTCAAGGATCAGCTCAACCGGTCCAAAGGTTTTGG
TTTCGTCGAGGTATGTGGTTCTCCGCCCTTCTATTCCCCTTTTCCCTTTC
CTTCTCCCCCCCATCCCCTTTCCCCCCTCCCTTCTATCCATAACGACATG
AATTCATGTTACACCGACGCACATTCACCTCTCCCTCCTTCCCTCTCTGT
CTCTAACACGCGCCCAGATGGCGGTCAAGGAGGAAGGCGAGGAGGCCATT
GCGGCTTTAGATGGACGTGAGATTGACGGACGCCCCATTAATGTACGACT
AGGCACGAGCAAGGCACAGCCCCGTATGCGCAAGGACCGTACGATGGCCA
AGAAGGAGGGAGGGGAGCTGTTGTCTTAG

Coding sequence (CDS) from alignment at scaffold_10:50527..52155+

>mRNA_4224 ID=mRNA_4224|Name=jgi.p|Nanoce1779_2|639002|organism=Nannochloropsis oceanica|type=CDS|length=3915bp|location=Sequence derived from alignment at scaffold_10:50527..52155+ (Nannochloropsis oceanica)
ATGACGCAGGGCTATTTCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCG
ATGCATGAATGCGCACCGCCTTTCCAACCGTGGCGCCGCCCTCCCCCGTC
TCCGCCTCCCCCCCCTTCCCTCTTCCATCTCGGATTTTCTGGACGATGAC
AAGGACTCTGTCGCTCGCCCTGCCCCTTCCTCCCCCTCCTCCTCCTCCTC
TCCAGCGTCTTCCACCCCTCAGGATGACAACTTGGAGTATTTCGTCAGAT
GCGGTCGCTGCAATGCCGCCTATTCCGTGCCTGCGGATCTGGTGAAGCCG
GAGGGAGGCCGAGTGAAGTGCGAGGTGTGTGGACATACCTGGTTCCAGGC
CTCGAACCGGCTGCAGGTGCTGAGCCAGGGCTACGTGCTCAAGGACTACC
CCGATGACCTCAGGGAGAAAGTGGCCGAGAATGTGCGCAACAACCGCCAT
CCCCTCGACACCAGTGCCTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAA
CTTGCCTTTCTCGATGGGCGAGGAGGACATCAAGAACATGTTCGGGGCGC
ACGGTGGCGTCGTTTCGGTAACCATCGTCAAGGATCAGCTCAACCGGTCC
AAAGGTTTTGGTTTCGTCGAGATGGCGGTCAAGGAGGAAGGCGAGGAGGC
CATTGCGGCTTTAGATGGACGTGAGATTGACGGACGCCCCATTAATGTAC
GACTAGGCACGAGCAAGGCACAGCCCCGTATGCGCAAGGACCGTACGATG
GCCAAGAAGGAGGGAGGGGAGCTGTTGTCTTAGATGACGCAGGGCTATTT
CTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCGATGCATGAATGCGCACC
GCCTTTCCAACCGTGGCGCCGCCCTCCCCCGTCTCCGCCTCCCCCCCCTT
CCCTCTTCCATCTCGGATTTTCTGGACGATGACAAGGACTCTGTCGCTCG
CCCTGCCCCTTCCTCCCCCTCCTCCTCCTCCTCTCCAGCGTCTTCCACCC
CTCAGGATGACAACTTGGAGTATTTCGTCAGATGCGGTCGCTGCAATGCC
GCCTATTCCGTGCCTGCGGATCTGGTGAAGCCGGAGGGAGGCCGAGTGAA
GTGCGAGGTGTGTGGACATACCTGGTTCCAGGCCTCGAACCGGCTGCAGG
TGCTGAGCCAGGGCTACGTGCTCAAGGACTACCCCGATGACCTCAGGGAG
AAAGTGGCCGAGAATGTGCGCAACAACCGCCATCCCCTCGACACCAGTGC
CTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAACTTGCCTTTCTCGATGG
GCGAGGAGGACATCAAGAACATGTTCGGGGCGCACGGTGGCGTCGTTTCG
GTAACCATCGTCAAGGATCAGCTCAACCGGTCCAAAGGTTTTGGTTTCGT
CGAGATGGCGGTCAAGGAGGAAGGCGAGGAGGCCATTGCGGCTTTAGATG
GACGTGAGATTGACGGACGCCCCATTAATGTACGACTAGGCACGAGCAAG
GCACAGCCCCGTATGCGCAAGGACCGTACGATGGCCAAGAAGGAGGGAGG
GGAGCTGTTGTCTTAGATGACGCAGGGCTATTTCTTCCCCTCCCCCTTGG
CGCCCATGCAAAAGCGATGCATGAATGCGCACCGCCTTTCCAACCGTGGC
GCCGCCCTCCCCCGTCTCCGCCTCCCCCCCCTTCCCTCTTCCATCTCGGA
TTTTCTGGACGATGACAAGGACTCTGTCGCTCGCCCTGCCCCTTCCTCCC
CCTCCTCCTCCTCCTCTCCAGCGTCTTCCACCCCTCAGGATGACAACTTG
GAGTATTTCGTCAGATGCGGTCGCTGCAATGCCGCCTATTCCGTGCCTGC
GGATCTGGTGAAGCCGGAGGGAGGCCGAGTGAAGTGCGAGGTGTGTGGAC
ATACCTGGTTCCAGGCCTCGAACCGGCTGCAGGTGCTGAGCCAGGGCTAC
GTGCTCAAGGACTACCCCGATGACCTCAGGGAGAAAGTGGCCGAGAATGT
GCGCAACAACCGCCATCCCCTCGACACCAGTGCCTCCAAGGGCGCCATCT
CTGTGTTCGTGGGGAACTTGCCTTTCTCGATGGGCGAGGAGGACATCAAG
AACATGTTCGGGGCGCACGGTGGCGTCGTTTCGGTAACCATCGTCAAGGA
TCAGCTCAACCGGTCCAAAGGTTTTGGTTTCGTCGAGATGGCGGTCAAGG
AGGAAGGCGAGGAGGCCATTGCGGCTTTAGATGGACGTGAGATTGACGGA
CGCCCCATTAATGTACGACTAGGCACGAGCAAGGCACAGCCCCGTATGCG
CAAGGACCGTACGATGGCCAAGAAGGAGGGAGGGGAGCTGTTGTCTTAGA
TGACGCAGGGCTATTTCTTCCCCTCCCCCTTGGCGCCCATGCAAAAGCGA
TGCATGAATGCGCACCGCCTTTCCAACCGTGGCGCCGCCCTCCCCCGTCT
CCGCCTCCCCCCCCTTCCCTCTTCCATCTCGGATTTTCTGGACGATGACA
AGGACTCTGTCGCTCGCCCTGCCCCTTCCTCCCCCTCCTCCTCCTCCTCT
CCAGCGTCTTCCACCCCTCAGGATGACAACTTGGAGTATTTCGTCAGATG
CGGTCGCTGCAATGCCGCCTATTCCGTGCCTGCGGATCTGGTGAAGCCGG
AGGGAGGCCGAGTGAAGTGCGAGGTGTGTGGACATACCTGGTTCCAGGCC
TCGAACCGGCTGCAGGTGCTGAGCCAGGGCTACGTGCTCAAGGACTACCC
CGATGACCTCAGGGAGAAAGTGGCCGAGAATGTGCGCAACAACCGCCATC
CCCTCGACACCAGTGCCTCCAAGGGCGCCATCTCTGTGTTCGTGGGGAAC
TTGCCTTTCTCGATGGGCGAGGAGGACATCAAGAACATGTTCGGGGCGCA
CGGTGGCGTCGTTTCGGTAACCATCGTCAAGGATCAGCTCAACCGGTCCA
AAGGTTTTGGTTTCGTCGAGATGGCGGTCAAGGAGGAAGGCGAGGAGGCC
ATTGCGGCTTTAGATGGACGTGAGATTGACGGACGCCCCATTAATGTACG
ACTAGGCACGAGCAAGGCACAGCCCCGTATGCGCAAGGACCGTACGATGG
CCAAGAAGGAGGGAGGGGAGCTGTTGTCTTAGATGACGCAGGGCTATTTC
TTCCCCTCCCCCTTGGCGCCCATGCAAAAGCGATGCATGAATGCGCACCG
CCTTTCCAACCGTGGCGCCGCCCTCCCCCGTCTCCGCCTCCCCCCCCTTC
CCTCTTCCATCTCGGATTTTCTGGACGATGACAAGGACTCTGTCGCTCGC
CCTGCCCCTTCCTCCCCCTCCTCCTCCTCCTCTCCAGCGTCTTCCACCCC
TCAGGATGACAACTTGGAGTATTTCGTCAGATGCGGTCGCTGCAATGCCG
CCTATTCCGTGCCTGCGGATCTGGTGAAGCCGGAGGGAGGCCGAGTGAAG
TGCGAGGTGTGTGGACATACCTGGTTCCAGGCCTCGAACCGGCTGCAGGT
GCTGAGCCAGGGCTACGTGCTCAAGGACTACCCCGATGACCTCAGGGAGA
AAGTGGCCGAGAATGTGCGCAACAACCGCCATCCCCTCGACACCAGTGCC
TCCAAGGGCGCCATCTCTGTGTTCGTGGGGAACTTGCCTTTCTCGATGGG
CGAGGAGGACATCAAGAACATGTTCGGGGCGCACGGTGGCGTCGTTTCGG
TAACCATCGTCAAGGATCAGCTCAACCGGTCCAAAGGTTTTGGTTTCGTC
GAGATGGCGGTCAAGGAGGAAGGCGAGGAGGCCATTGCGGCTTTAGATGG
ACGTGAGATTGACGGACGCCCCATTAATGTACGACTAGGCACGAGCAAGG
CACAGCCCCGTATGCGCAAGGACCGTACGATGGCCAAGAAGGAGGGAGGG
GAGCTGTTGTCTTAG

Synonyms

Publications