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Properties
| Property Name | Value |
|---|
| TranscriptId | 18429 |
| Track | FilteredModels2 |
| ProteinId | 18343 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:48329..49949 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4223 ID=mRNA_4223|Name=jgi.p|Nanoce1779_2|18343|organism=Nannochloropsis oceanica|type=mRNA|length=1118bp
CAAAGATAATGAGGACGAGGATGTCCTCGTGCTTGGTTGGTCGCCGCAAT
TTTTGTTTGGTCTAGGATCAATCCTCACAACGCGCTGACCGACCTCCCCA
TCCACAGACACCACCCACTCAACCAAGCACTCTACGCAGTTAAATAAACA
GCAGCAGCAGCCATGAGTGCCCCCGACGAGATTATCTGGCAGATAATCAA
CCATCAATTCTGCTCCTTCAAATCCAAAATCAATGCCAAAGAACAAACCT
TTTGCCGCAACCCCTACAATGTCACGGGCTTATGCCTTCGGTCCGCCTGC
CCACTGGCCAATAGTCGTTACGCCACCATCCGCGAAGAAGAAGGTCATTG
CTATCTATTGCTCAAGACGGCCGAACGCGCCCACACCCCTGCCAAGCTGT
GGGAGAAGGTCCGCCTGCCTACCAACTACGCCAAGGCCCTGGAGAAAGTG
TCGAAGGAATTGGAGTTTTTTCCCAAATACCTGCAGCATCGAAACAAGCA
ACGACTGACTAAGATCCACCAGTATTTGATTCGCATGCGCAAATTGAAAT
TAAAAGTCAATAAGCCGAAGTTGGTCGGGATTCACAAGAAGGTCGAACGC
CGTGAGAAAAAGCGCGAAGCCAAGGCACTAGCAGCCGCCAAGCTGGACCA
GAGCATCGAGAAGGAGCTGTTGGAGCGGTTGAAGCAAGGGACGTATGGTG
ATATTTACAATTTTCCCGAGACGGCCTACAACAAGGTGTTGGACGAGGAG
GGGGAAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGG
GAGCGGGTTGGAGGAGGGGGAGGAGTATGTGGAGGGAGAGGATGAGGAGG
ATGAGAGCGAGAGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAA
TTTGTCGAAGGTGACTACGAGGAAGAGGAGGACATGGAGGATGGAGGGTC
ATACATGCTAGAGGATGAAGGTGAGTTTGATGAGGAGGCAGCCATGCAGC
CGTCAAAAAGCCGGCGGCGAAGAAGGGAAAGAAGGTGGCGCATCCGCATG
TGGAGGTGGAGTGGTGATTTGATTTGCTATTGAAAGGAAAGAGATTTGGA
AAAATTTAGTGAAGGCGC back to topprotein sequence of jgi.p|Nanoce1779_2|18343 >mRNA_4223-protein ID=mRNA_4223-protein|Name=jgi.p|Nanoce1779_2|18343|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSAPDEIIWQIINHQFCSFKSKINAKEQTFCRNPYNVTGLCLRSACPLAN
SRYATIREEEGHCYLLLKTAERAHTPAKLWEKVRLPTNYAKALEKVSKEL
EFFPKYLQHRNKQRLTKIHQYLIRMRKLKLKVNKPKLVGIHKKVERREKK
REAKALAAAKLDQSIEKELLERLKQGTYGDIYNFPETAYNKVLDEEGEDQ
EEEEEEEEEEEGGSGLEEGEEYVEGEDEEDESESEEEEEEEEEEREFVEG
DYEEEEDMEDGGSYMLEDEGEFDEEAAMQPSKSRRRRRERRWRIRMWRWS
GDLICY* back to topmRNA from alignment at scaffold_10:48329..49949- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4223 ID=mRNA_4223|Name=jgi.p|Nanoce1779_2|18343|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp|location=Sequence derived from alignment at scaffold_10:48329..49949- (Nannochloropsis oceanica)
CAAAGATAATGAGGACGAGGATGTCCTCGTGCTTGGTTGGTCGCCGCAAT
TTTTGTTTGGTCTAGGATCAATCCTCACAACGCGCTGACCGACCTCCCCA
TCCACAGACACCACCCACTCAACCAAGCACTCTACGCAGTTAAATAAACA
GCAGCAGCAGCCATGAGTGCCCCCGACGAGATTATCTGGCAGATAATCAA
CCATCAATTCTGCTCCTTCAAATCCAAGTATGTGCAAAAATGATCCCTGC
AGGCTCTCTTCTCCCTCCCCCTCCCTTCTCCCTGCTCCCTCTCACCAACC
TCAAAGGCTCATGTATCATCATCATCAGGAATCATGTCCTGCTTCTCCCT
GACCATGCACTATCCCACCAATTCTCTTCTTTTCTCATTTAATGTCTTCT
TCCTCTTCCACTTTTATCCGTTCCTCCCCAGAATCAATGCCAAAGAACAA
ACCTTTTGCCGCAACCCCTACAATGTCACGGGCTTATGCCTTCGGTCCGC
CTGCCCACTGGCCAATAGTCGTTACGCCACCATCCGCGAAGAAGAAGGTC
ATTGCTATCTATTGCTCAAGACGGCCGAACGCGCCCACACCCCTGCCAAG
CTGTGGGAGAAGGTCCGCCTGCCTACCAACTACGCCAAGGCCCTGGAGAA
AGTGTCGAAGGAATTGGAGTTTTTTCCCAAATACCTGCAGCATCGAAACA
AGCAACGACTGACTAAGATCCACCAGTATTTGATTCGCATGCGCAAATTG
AAATTAAAAGTCAATAAGCCGAAGTTGGTCGGGATTCACAAGAAGGTACT
AGAAGTCCTCCCTCCACCCCGTCCTCCCTCCCTCCCCTCTATTTTCCTTC
CTGATATTATGGATGCTGTAGGGCTAGATCTCCCACCCCTTTTTTAACCC
TCTTTTCTCACCACCTTTCCCCTCCTTCCCTCTGTTTTTGTTTTCCCAGG
TCGAACGCCGTGAGAAAAAGCGCGAAGCCAAGGCACTAGCAGCCGCCAAG
CTGGACCAGAGCATCGAGAAGGAGCTGTTGGAGCGGTTGAAGCAAGGGAC
GTATGGTGATATTTACAATTTTCCCGAGACGGCCTACAACAAGGTGTTGG
ACGAGGAGGGGGAAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGGGGAGCGGGTTGGAGGAGGGGGAGGAGTATGTGGAGGGAGAGGA
TGAGGAGGATGAGAGCGAGAGCGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAGGGAATTTGTCGAAGGTGACTACGAGGAAGAGGAGGACATGGAGGAT
GGAGGGTCATACATGCTAGAGGATGAAGGTGAGTTTGATGAGGAGGCAGC
CATGGCCTCGATGCGCACGGCGGCAGCAGGGGGAAGCAAGAAGAGAGGGA
GGGGGGTTGGGATTGGAGGAGAAGGTAAAACAGGTAAGGGCGGAAGGGGA
GCAGCCGTCAAAAAGCCGGCGGCGAAGAAGGGAAAGAAGGTGGCGCATCC
GCATGTGGAGGTGGAGTACGAGCATGAAGACGAGGAGGTGGAGGTGCAGG
CGGGGGGAGGCTCGTGGTGATTTGATTTGCTATTGAAAGGAAAGAGATTT
GGAAAAATTTAGTGAAGGCGC back to topCoding sequence (CDS) from alignment at scaffold_10:48329..49949- >mRNA_4223 ID=mRNA_4223|Name=jgi.p|Nanoce1779_2|18343|organism=Nannochloropsis oceanica|type=CDS|length=4605bp|location=Sequence derived from alignment at scaffold_10:48329..49949- (Nannochloropsis oceanica)
GTGGTGATTTGATTTGCTATTGACAGCCGTCAAAAAGCCGGCGGCGAAGA
AGGGAAAGAAGGTGGCGCATCCGCATGTGGAGGTGGAGTCGAACGCCGTG
AGAAAAAGCGCGAAGCCAAGGCACTAGCAGCCGCCAAGCTGGACCAGAGC
ATCGAGAAGGAGCTGTTGGAGCGGTTGAAGCAAGGGACGTATGGTGATAT
TTACAATTTTCCCGAGACGGCCTACAACAAGGTGTTGGACGAGGAGGGGG
AAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGAGC
GGGTTGGAGGAGGGGGAGGAGTATGTGGAGGGAGAGGATGAGGAGGATGA
GAGCGAGAGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAATTTG
TCGAAGGTGACTACGAGGAAGAGGAGGACATGGAGGATGGAGGGTCATAC
ATGCTAGAGGATGAAGGTGAGTTTGATGAGGAGGCAGCCATGAATCAATG
CCAAAGAACAAACCTTTTGCCGCAACCCCTACAATGTCACGGGCTTATGC
CTTCGGTCCGCCTGCCCACTGGCCAATAGTCGTTACGCCACCATCCGCGA
AGAAGAAGGTCATTGCTATCTATTGCTCAAGACGGCCGAACGCGCCCACA
CCCCTGCCAAGCTGTGGGAGAAGGTCCGCCTGCCTACCAACTACGCCAAG
GCCCTGGAGAAAGTGTCGAAGGAATTGGAGTTTTTTCCCAAATACCTGCA
GCATCGAAACAAGCAACGACTGACTAAGATCCACCAGTATTTGATTCGCA
TGCGCAAATTGAAATTAAAAGTCAATAAGCCGAAGTTGGTCGGGATTCAC
AAGAAGATGAGTGCCCCCGACGAGATTATCTGGCAGATAATCAACCATCA
ATTCTGCTCCTTCAAATCCAAGTGGTGATTTGATTTGCTATTGACAGCCG
TCAAAAAGCCGGCGGCGAAGAAGGGAAAGAAGGTGGCGCATCCGCATGTG
GAGGTGGAGTCGAACGCCGTGAGAAAAAGCGCGAAGCCAAGGCACTAGCA
GCCGCCAAGCTGGACCAGAGCATCGAGAAGGAGCTGTTGGAGCGGTTGAA
GCAAGGGACGTATGGTGATATTTACAATTTTCCCGAGACGGCCTACAACA
AGGTGTTGGACGAGGAGGGGGAAGATCAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGGGGGGAGCGGGTTGGAGGAGGGGGAGGAGTATGTGGA
GGGAGAGGATGAGGAGGATGAGAGCGAGAGCGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAGGGAATTTGTCGAAGGTGACTACGAGGAAGAGGAGGAC
ATGGAGGATGGAGGGTCATACATGCTAGAGGATGAAGGTGAGTTTGATGA
GGAGGCAGCCATGAATCAATGCCAAAGAACAAACCTTTTGCCGCAACCCC
TACAATGTCACGGGCTTATGCCTTCGGTCCGCCTGCCCACTGGCCAATAG
TCGTTACGCCACCATCCGCGAAGAAGAAGGTCATTGCTATCTATTGCTCA
AGACGGCCGAACGCGCCCACACCCCTGCCAAGCTGTGGGAGAAGGTCCGC
CTGCCTACCAACTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGAATTGGA
GTTTTTTCCCAAATACCTGCAGCATCGAAACAAGCAACGACTGACTAAGA
TCCACCAGTATTTGATTCGCATGCGCAAATTGAAATTAAAAGTCAATAAG
CCGAAGTTGGTCGGGATTCACAAGAAGATGAGTGCCCCCGACGAGATTAT
CTGGCAGATAATCAACCATCAATTCTGCTCCTTCAAATCCAAGTGGTGAT
TTGATTTGCTATTGACAGCCGTCAAAAAGCCGGCGGCGAAGAAGGGAAAG
AAGGTGGCGCATCCGCATGTGGAGGTGGAGTCGAACGCCGTGAGAAAAAG
CGCGAAGCCAAGGCACTAGCAGCCGCCAAGCTGGACCAGAGCATCGAGAA
GGAGCTGTTGGAGCGGTTGAAGCAAGGGACGTATGGTGATATTTACAATT
TTCCCGAGACGGCCTACAACAAGGTGTTGGACGAGGAGGGGGAAGATCAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGGA
GGAGGGGGAGGAGTATGTGGAGGGAGAGGATGAGGAGGATGAGAGCGAGA
GCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGGT
GACTACGAGGAAGAGGAGGACATGGAGGATGGAGGGTCATACATGCTAGA
GGATGAAGGTGAGTTTGATGAGGAGGCAGCCATGAATCAATGCCAAAGAA
CAAACCTTTTGCCGCAACCCCTACAATGTCACGGGCTTATGCCTTCGGTC
CGCCTGCCCACTGGCCAATAGTCGTTACGCCACCATCCGCGAAGAAGAAG
GTCATTGCTATCTATTGCTCAAGACGGCCGAACGCGCCCACACCCCTGCC
AAGCTGTGGGAGAAGGTCCGCCTGCCTACCAACTACGCCAAGGCCCTGGA
GAAAGTGTCGAAGGAATTGGAGTTTTTTCCCAAATACCTGCAGCATCGAA
ACAAGCAACGACTGACTAAGATCCACCAGTATTTGATTCGCATGCGCAAA
TTGAAATTAAAAGTCAATAAGCCGAAGTTGGTCGGGATTCACAAGAAGAT
GAGTGCCCCCGACGAGATTATCTGGCAGATAATCAACCATCAATTCTGCT
CCTTCAAATCCAAGTGGTGATTTGATTTGCTATTGACAGCCGTCAAAAAG
CCGGCGGCGAAGAAGGGAAAGAAGGTGGCGCATCCGCATGTGGAGGTGGA
GTCGAACGCCGTGAGAAAAAGCGCGAAGCCAAGGCACTAGCAGCCGCCAA
GCTGGACCAGAGCATCGAGAAGGAGCTGTTGGAGCGGTTGAAGCAAGGGA
CGTATGGTGATATTTACAATTTTCCCGAGACGGCCTACAACAAGGTGTTG
GACGAGGAGGGGGAAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGGGGAGCGGGTTGGAGGAGGGGGAGGAGTATGTGGAGGGAGAGG
ATGAGGAGGATGAGAGCGAGAGCGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAGGGAATTTGTCGAAGGTGACTACGAGGAAGAGGAGGACATGGAGGA
TGGAGGGTCATACATGCTAGAGGATGAAGGTGAGTTTGATGAGGAGGCAG
CCATGAATCAATGCCAAAGAACAAACCTTTTGCCGCAACCCCTACAATGT
CACGGGCTTATGCCTTCGGTCCGCCTGCCCACTGGCCAATAGTCGTTACG
CCACCATCCGCGAAGAAGAAGGTCATTGCTATCTATTGCTCAAGACGGCC
GAACGCGCCCACACCCCTGCCAAGCTGTGGGAGAAGGTCCGCCTGCCTAC
CAACTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGAATTGGAGTTTTTTC
CCAAATACCTGCAGCATCGAAACAAGCAACGACTGACTAAGATCCACCAG
TATTTGATTCGCATGCGCAAATTGAAATTAAAAGTCAATAAGCCGAAGTT
GGTCGGGATTCACAAGAAGATGAGTGCCCCCGACGAGATTATCTGGCAGA
TAATCAACCATCAATTCTGCTCCTTCAAATCCAAGTGGTGATTTGATTTG
CTATTGACAGCCGTCAAAAAGCCGGCGGCGAAGAAGGGAAAGAAGGTGGC
GCATCCGCATGTGGAGGTGGAGTCGAACGCCGTGAGAAAAAGCGCGAAGC
CAAGGCACTAGCAGCCGCCAAGCTGGACCAGAGCATCGAGAAGGAGCTGT
TGGAGCGGTTGAAGCAAGGGACGTATGGTGATATTTACAATTTTCCCGAG
ACGGCCTACAACAAGGTGTTGGACGAGGAGGGGGAAGATCAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGGAGGAGGGGG
AGGAGTATGTGGAGGGAGAGGATGAGGAGGATGAGAGCGAGAGCGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGGTGACTACGA
GGAAGAGGAGGACATGGAGGATGGAGGGTCATACATGCTAGAGGATGAAG
GTGAGTTTGATGAGGAGGCAGCCATGAATCAATGCCAAAGAACAAACCTT
TTGCCGCAACCCCTACAATGTCACGGGCTTATGCCTTCGGTCCGCCTGCC
CACTGGCCAATAGTCGTTACGCCACCATCCGCGAAGAAGAAGGTCATTGC
TATCTATTGCTCAAGACGGCCGAACGCGCCCACACCCCTGCCAAGCTGTG
GGAGAAGGTCCGCCTGCCTACCAACTACGCCAAGGCCCTGGAGAAAGTGT
CGAAGGAATTGGAGTTTTTTCCCAAATACCTGCAGCATCGAAACAAGCAA
CGACTGACTAAGATCCACCAGTATTTGATTCGCATGCGCAAATTGAAATT
AAAAGTCAATAAGCCGAAGTTGGTCGGGATTCACAAGAAGATGAGTGCCC
CCGACGAGATTATCTGGCAGATAATCAACCATCAATTCTGCTCCTTCAAA
TCCAA back to top
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