jgi.p|Nanoce1779_2|588401, mRNA_4222 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588401
Unique NamemRNA_4222
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1582
Alignment locationscaffold_10:45818..47399 -

Link to JBrowse

Properties
Property NameValue
TranscriptId588487
TrackFilteredModels2
ProteinId588401
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:45818..47399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588401gene_4222Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588401mRNA_4222-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4222CDS_4222Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4222 ID=mRNA_4222|Name=jgi.p|Nanoce1779_2|588401|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
AGTTGCAATGTTTTCTCTCTCATCTCTCATCTTCTCATCACAAAGCGCAG
GTAGATGCCGTTCCATTACGCAGACATGCCGCATAAGCCGCTGTGGCCCC
TAGATGAGCGGGACGGGGCCGCACTCGCCTGTGCCTTGATTTCTCTTGCA
GTAGCTGCTTTTGGGGGGGTGGGCGGTGGTGGTATCTTGCTGCCCATTTA
CATCCTTGTCCTCGACTTTCGCCTCAAGGAAGCCGTCGCGTTGGCAAATG
CCACGATCCTCGGTGGTGCCATTGCGAATGTGTGGTTCTCGTCGACAAAA
CGCCATCCTTTTGTCGATAGGCCGCTGATAGCGTGGGATTTGATCTTACT
TTTTGAGCCCGTCGTGATTTTCGGTACCGTCCTCGGCTCCTTTGCCAACA
AGCTCTTGCCCGATGTCATTGTCGAGATTATTTTGGTTCTCCTCTACGGA
GCTCTTTCCTACCAGACGATGTCCCGTGCCATCCAATATATGGAGAAAGA
GGGGGGCTGGCAACTTCTCCGCAAACGATTGCTGCCTACGACCATGAACT
CACCCAACGCAGCAGTTTCTCCCTGCACAGAAGGTCCATCCGGGCAAGCC
ATTCTATCTAACGAGACCGCTGCCCACAAAGAAGTCGACGACACACCAAA
CAAGATTAAGAGCAACGGGGATTCTAGAATGATTTCCGAAAGGACACCAT
TGTTCGTGTCTTCTGCTGACAGCGACGACGATGCCTCCTATTATTCAGTC
TCGTGCTCGCTTGATACCGACGAAAGATTCTACAATTTGCCGCCATCAGA
CACCCCAAAGGAGGTTGTTGTGACGCGTCTCAAATGTCAGGAGCTGTCCG
TGCGGTGGTGGAAGCCCGCCGCCATGACCTTATGTTTTGCGGGCATGGTA
TCCTTGCGGATTGGACAAAAGGCTGTCCGCTGTGGCTCCACTGCCTACTG
GATCTTGACACTAGGCCTCATTCCCTGGGTCTTGCCCTTCTTCCTTCTAG
CACGCCGACACGTTATCAAAGATGTTCAAACTAAACAACTTTGCGGCTTT
CCTTTCCCACCAGGTGATGTAAAATGGACTACGTGGAACAGTGTACGTTG
GCCCCTAATTTGCTCCCTTGCCGGTGTCATGAGCGGAATGCTTGGTTCGA
GCGGTGGCAGTATTAAGGCCCCTTTGTTGCTGGAGCTGGGGACTCCGCCG
ACGGTTGTCTCTGCCACGGTTGCGCAGATGGTTATGTTCACCTCGGCGTC
GTCGAGTTTGGCGTTGTTAGTCCTGGGTTTCATGCCCACAGATTATGGAC
CCCTTTTGTTCGCTTACGGCGGGCTGATAACGTTTGTGACAAATTGGGCC
GCGTCCCATTTCCTTGGTCGGCGGCGAACTCAGTCGGTGCCTATGCTAAG
CATTGCTCTCATCATAACACTCAGCACAATTACGATGGGGTTGCAGGCAG
GGGTGCGTCTATCGGAGGATCCGGCCGCGGCTAAGAAATTTGGACGCTTG
TGCGATTGAGGTCTTGAATAAAGGAATCAGGCAGAACGGATAAAAAAGGA
TGAAAATACAAAAGACTGAGAGGTTTGGAAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|588401

>mRNA_4222-protein ID=mRNA_4222-protein|Name=jgi.p|Nanoce1779_2|588401|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MPFHYADMPHKPLWPLDERDGAALACALISLAVAAFGGVGGGGILLPIYI
LVLDFRLKEAVALANATILGGAIANVWFSSTKRHPFVDRPLIAWDLILLF
EPVVIFGTVLGSFANKLLPDVIVEIILVLLYGALSYQTMSRAIQYMEKEG
GWQLLRKRLLPTTMNSPNAAVSPCTEGPSGQAILSNETAAHKEVDDTPNK
IKSNGDSRMISERTPLFVSSADSDDDASYYSVSCSLDTDERFYNLPPSDT
PKEVVVTRLKCQELSVRWWKPAAMTLCFAGMVSLRIGQKAVRCGSTAYWI
LTLGLIPWVLPFFLLARRHVIKDVQTKQLCGFPFPPGDVKWTTWNSVRWP
LICSLAGVMSGMLGSSGGSIKAPLLLELGTPPTVVSATVAQMVMFTSASS
SLALLVLGFMPTDYGPLLFAYGGLITFVTNWAASHFLGRRRTQSVPMLSI
ALIITLSTITMGLQAGVRLSEDPAAAKKFGRLCD*
back to top

mRNA from alignment at scaffold_10:45818..47399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4222 ID=mRNA_4222|Name=jgi.p|Nanoce1779_2|588401|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_10:45818..47399- (Nannochloropsis oceanica)
AGTTGCAATGTTTTCTCTCTCATCTCTCATCTTCTCATCACAAAGCGCAG
GTAGATGCCGTTCCATTACGCAGACATGCCGCATAAGCCGCTGTGGCCCC
TAGATGAGCGGGACGGGGCCGCACTCGCCTGTGCCTTGATTTCTCTTGCA
GTAGCTGCTTTTGGGGGGGTGGGCGGTGGTGGTATCTTGCTGCCCATTTA
CATCCTTGTCCTCGACTTTCGCCTCAAGGAAGCCGTCGCGTTGGCAAATG
CCACGATCCTCGGTGGTGCCATTGCGAATGTGTGGTTCTCGTCGACAAAA
CGCCATCCTTTTGTCGATAGGCCGCTGATAGCGTGGGATTTGATCTTACT
TTTTGAGCCCGTCGTGATTTTCGGTACCGTCCTCGGCTCCTTTGCCAACA
AGCTCTTGCCCGATGTCATTGTCGAGATTATTTTGGTTCTCCTCTACGGA
GCTCTTTCCTACCAGACGATGTCCCGTGCCATCCAATATATGGAGAAAGA
GGGGGGCTGGCAACTTCTCCGCAAACGATTGCTGCCTACGACCATGAACT
CACCCAACGCAGCAGTTTCTCCCTGCACAGAAGGTCCATCCGGGCAAGCC
ATTCTATCTAACGAGACCGCTGCCCACAAAGAAGTCGACGACACACCAAA
CAAGATTAAGAGCAACGGGGATTCTAGAATGATTTCCGAAAGGACACCAT
TGTTCGTGTCTTCTGCTGACAGCGACGACGATGCCTCCTATTATTCAGTC
TCGTGCTCGCTTGATACCGACGAAAGATTCTACAATTTGCCGCCATCAGA
CACCCCAAAGGAGGTTGTTGTGACGCGTCTCAAATGTCAGGAGCTGTCCG
TGCGGTGGTGGAAGCCCGCCGCCATGACCTTATGTTTTGCGGGCATGGTA
TCCTTGCGGATTGGACAAAAGGCTGTCCGCTGTGGCTCCACTGCCTACTG
GATCTTGACACTAGGCCTCATTCCCTGGGTCTTGCCCTTCTTCCTTCTAG
CACGCCGACACGTTATCAAAGATGTTCAAACTAAACAACTTTGCGGCTTT
CCTTTCCCACCAGGTGATGTAAAATGGACTACGTGGAACAGTGTACGTTG
GCCCCTAATTTGCTCCCTTGCCGGTGTCATGAGCGGAATGCTTGGTTCGA
GCGGTGGCAGTATTAAGGCCCCTTTGTTGCTGGAGCTGGGGACTCCGCCG
ACGGTTGTCTCTGCCACGGTTGCGCAGATGGTTATGTTCACCTCGGCGTC
GTCGAGTTTGGCGTTGTTAGTCCTGGGTTTCATGCCCACAGATTATGGAC
CCCTTTTGTTCGCTTACGGCGGGCTGATAACGTTTGTGACAAATTGGGCC
GCGTCCCATTTCCTTGGTCGGCGGCGAACTCAGTCGGTGCCTATGCTAAG
CATTGCTCTCATCATAACACTCAGCACAATTACGATGGGGTTGCAGGCAG
GGGTGCGTCTATCGGAGGATCCGGCCGCGGCTAAGAAATTTGGACGCTTG
TGCGATTGAGGTCTTGAATAAAGGAATCAGGCAGAACGGATAAAAAAGGA
TGAAAATACAAAAGACTGAGAGGTTTGGAAGG
back to top

Coding sequence (CDS) from alignment at scaffold_10:45818..47399-

>mRNA_4222 ID=mRNA_4222|Name=jgi.p|Nanoce1779_2|588401|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at scaffold_10:45818..47399- (Nannochloropsis oceanica)
ATGCCGTTCCATTACGCAGACATGCCGCATAAGCCGCTGTGGCCCCTAGA
TGAGCGGGACGGGGCCGCACTCGCCTGTGCCTTGATTTCTCTTGCAGTAG
CTGCTTTTGGGGGGGTGGGCGGTGGTGGTATCTTGCTGCCCATTTACATC
CTTGTCCTCGACTTTCGCCTCAAGGAAGCCGTCGCGTTGGCAAATGCCAC
GATCCTCGGTGGTGCCATTGCGAATGTGTGGTTCTCGTCGACAAAACGCC
ATCCTTTTGTCGATAGGCCGCTGATAGCGTGGGATTTGATCTTACTTTTT
GAGCCCGTCGTGATTTTCGGTACCGTCCTCGGCTCCTTTGCCAACAAGCT
CTTGCCCGATGTCATTGTCGAGATTATTTTGGTTCTCCTCTACGGAGCTC
TTTCCTACCAGACGATGTCCCGTGCCATCCAATATATGGAGAAAGAGGGG
GGCTGGCAACTTCTCCGCAAACGATTGCTGCCTACGACCATGAACTCACC
CAACGCAGCAGTTTCTCCCTGCACAGAAGGTCCATCCGGGCAAGCCATTC
TATCTAACGAGACCGCTGCCCACAAAGAAGTCGACGACACACCAAACAAG
ATTAAGAGCAACGGGGATTCTAGAATGATTTCCGAAAGGACACCATTGTT
CGTGTCTTCTGCTGACAGCGACGACGATGCCTCCTATTATTCAGTCTCGT
GCTCGCTTGATACCGACGAAAGATTCTACAATTTGCCGCCATCAGACACC
CCAAAGGAGGTTGTTGTGACGCGTCTCAAATGTCAGGAGCTGTCCGTGCG
GTGGTGGAAGCCCGCCGCCATGACCTTATGTTTTGCGGGCATGGTATCCT
TGCGGATTGGACAAAAGGCTGTCCGCTGTGGCTCCACTGCCTACTGGATC
TTGACACTAGGCCTCATTCCCTGGGTCTTGCCCTTCTTCCTTCTAGCACG
CCGACACGTTATCAAAGATGTTCAAACTAAACAACTTTGCGGCTTTCCTT
TCCCACCAGGTGATGTAAAATGGACTACGTGGAACAGTGTACGTTGGCCC
CTAATTTGCTCCCTTGCCGGTGTCATGAGCGGAATGCTTGGTTCGAGCGG
TGGCAGTATTAAGGCCCCTTTGTTGCTGGAGCTGGGGACTCCGCCGACGG
TTGTCTCTGCCACGGTTGCGCAGATGGTTATGTTCACCTCGGCGTCGTCG
AGTTTGGCGTTGTTAGTCCTGGGTTTCATGCCCACAGATTATGGACCCCT
TTTGTTCGCTTACGGCGGGCTGATAACGTTTGTGACAAATTGGGCCGCGT
CCCATTTCCTTGGTCGGCGGCGAACTCAGTCGGTGCCTATGCTAAGCATT
GCTCTCATCATAACACTCAGCACAATTACGATGGGGTTGCAGGCAGGGGT
GCGTCTATCGGAGGATCCGGCCGCGGCTAAGAAATTTGGACGCTTGTGCG
ATTGA
back to top
Synonyms
Publications