jgi.p|Nanoce1779_2|588397, mRNA_4220 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588397
Unique NamemRNA_4220
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1050
Alignment locationscaffold_10:40758..41807 +

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Properties
Property NameValue
TranscriptId588483
TrackFilteredModels2
ProteinId588397
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:40758..41807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588397gene_4220Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588397mRNA_4220-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4220CDS_4220Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4220 ID=mRNA_4220|Name=jgi.p|Nanoce1779_2|588397|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
CTTGTGCCTGGACCGCAGCCAGGCCTTTTTGGCACCTACGCCCGCCCAAC
GTCCCTTCTCCTCCTCCTCCTCTTCCCTCTCCCGCACAAGTCGCTCCTCC
CACTTGACCATGGCCCTAGACCCCACCTCCACTGTGGAGGCCTTACAGCA
CGCTGGGAGCATACTGATGGCTTACACGGACGACACCAAGCCGACCCTGA
ACGCGGAGATCATTGGCGTCAGCAGCATTGCTGTGTTTGCGGGTCTGGCG
GCCGTCTTTTCCCTTCTCACGAAAAATTTGAAGGCTAAGAACTTCGCCTT
TACCCTGTCCGAAGCAGAGCAAGCTGCTGTCGACGCGGTGAAGTCTTTGT
ACGATCCGACGGAGGAAGACCGAAGCTTGACTGAGGCCGGAACGGTGGGA
TTTGTCAAGAGAAAGGCGCTGGCCGAGAAGGCAAAGGAGGCCTACCAGAA
GGGCAGGGATGACCGTGAAGTGCGAGATAAGACGCTTTACTATGCCGAGA
TTGATCCTAGCTTTTTGGCAGTCTTACTCCGTGCCGCGAACCCCTCGGGT
GGTGGGATCTTCTATGACCTGGGCTCTGGCGCGGGACGGGCGGTTTTGGC
AGCCGCCAAGCTGGCCAAGTGGAAGAAGGCAATCGGGGTGGAGTATCTTG
CAGGATTGCACAAGGAAGCTGTGAAGTACGAAGGGAAGTTTAAGCGATTG
GGTGGCTCCCCGACGCAATTTTTGAACAAGGATTTCACAGAGGTGAATAT
TTCTGATGCTGAGGTTATTTTCGCGTACGCTACTAAGTACTCGAGGGATA
TTGATGATGTGCTGGCCACAGCGCCTGCGGGCTCACGAGTCATTAGCTTG
GATAGGCGGCTAAACGCTCGCAAGTTTAAATTACTCAAGACAATCGAGGA
TCCGGCCGGGGATTTGCAGTTGGTTTTTGGTTACGTGTATTTGACTCTCT
AGGTCTGGGTCTTCGGGGAGGTAAGTTTGAAGGAATTGGTAATAAGGGAT
GGGCTAGCGATGATCATGCGAAAAAGCAAAAAAAAGTTCTTTTTTTTAAA
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protein sequence of jgi.p|Nanoce1779_2|588397

>mRNA_4220-protein ID=mRNA_4220-protein|Name=jgi.p|Nanoce1779_2|588397|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MALDPTSTVEALQHAGSILMAYTDDTKPTLNAEIIGVSSIAVFAGLAAVF
SLLTKNLKAKNFAFTLSEAEQAAVDAVKSLYDPTEEDRSLTEAGTVGFVK
RKALAEKAKEAYQKGRDDREVRDKTLYYAEIDPSFLAVLLRAANPSGGGI
FYDLGSGAGRAVLAAAKLAKWKKAIGVEYLAGLHKEAVKYEGKFKRLGGS
PTQFLNKDFTEVNISDAEVIFAYATKYSRDIDDVLATAPAGSRVISLDRR
LNARKFKLLKTIEDPAGDLQLVFGYVYLTL*
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mRNA from alignment at scaffold_10:40758..41807+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4220 ID=mRNA_4220|Name=jgi.p|Nanoce1779_2|588397|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at scaffold_10:40758..41807+ (Nannochloropsis oceanica)
CTTGTGCCTGGACCGCAGCCAGGCCTTTTTGGCACCTACGCCCGCCCAAC
GTCCCTTCTCCTCCTCCTCCTCTTCCCTCTCCCGCACAAGTCGCTCCTCC
CACTTGACCATGGCCCTAGACCCCACCTCCACTGTGGAGGCCTTACAGCA
CGCTGGGAGCATACTGATGGCTTACACGGACGACACCAAGCCGACCCTGA
ACGCGGAGATCATTGGCGTCAGCAGCATTGCTGTGTTTGCGGGTCTGGCG
GCCGTCTTTTCCCTTCTCACGAAAAATTTGAAGGCTAAGAACTTCGCCTT
TACCCTGTCCGAAGCAGAGCAAGCTGCTGTCGACGCGGTGAAGTCTTTGT
ACGATCCGACGGAGGAAGACCGAAGCTTGACTGAGGCCGGAACGGTGGGA
TTTGTCAAGAGAAAGGCGCTGGCCGAGAAGGCAAAGGAGGCCTACCAGAA
GGGCAGGGATGACCGTGAAGTGCGAGATAAGACGCTTTACTATGCCGAGA
TTGATCCTAGCTTTTTGGCAGTCTTACTCCGTGCCGCGAACCCCTCGGGT
GGTGGGATCTTCTATGACCTGGGCTCTGGCGCGGGACGGGCGGTTTTGGC
AGCCGCCAAGCTGGCCAAGTGGAAGAAGGCAATCGGGGTGGAGTATCTTG
CAGGATTGCACAAGGAAGCTGTGAAGTACGAAGGGAAGTTTAAGCGATTG
GGTGGCTCCCCGACGCAATTTTTGAACAAGGATTTCACAGAGGTGAATAT
TTCTGATGCTGAGGTTATTTTCGCGTACGCTACTAAGTACTCGAGGGATA
TTGATGATGTGCTGGCCACAGCGCCTGCGGGCTCACGAGTCATTAGCTTG
GATAGGCGGCTAAACGCTCGCAAGTTTAAATTACTCAAGACAATCGAGGA
TCCGGCCGGGGATTTGCAGTTGGTTTTTGGTTACGTGTATTTGACTCTCT
AGGTCTGGGTCTTCGGGGAGGTAAGTTTGAAGGAATTGGTAATAAGGGAT
GGGCTAGCGATGATCATGCGAAAAAGCAAAAAAAAGTTCTTTTTTTTAAA
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Coding sequence (CDS) from alignment at scaffold_10:40758..41807+

>mRNA_4220 ID=mRNA_4220|Name=jgi.p|Nanoce1779_2|588397|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_10:40758..41807+ (Nannochloropsis oceanica)
ATGGCCCTAGACCCCACCTCCACTGTGGAGGCCTTACAGCACGCTGGGAG
CATACTGATGGCTTACACGGACGACACCAAGCCGACCCTGAACGCGGAGA
TCATTGGCGTCAGCAGCATTGCTGTGTTTGCGGGTCTGGCGGCCGTCTTT
TCCCTTCTCACGAAAAATTTGAAGGCTAAGAACTTCGCCTTTACCCTGTC
CGAAGCAGAGCAAGCTGCTGTCGACGCGGTGAAGTCTTTGTACGATCCGA
CGGAGGAAGACCGAAGCTTGACTGAGGCCGGAACGGTGGGATTTGTCAAG
AGAAAGGCGCTGGCCGAGAAGGCAAAGGAGGCCTACCAGAAGGGCAGGGA
TGACCGTGAAGTGCGAGATAAGACGCTTTACTATGCCGAGATTGATCCTA
GCTTTTTGGCAGTCTTACTCCGTGCCGCGAACCCCTCGGGTGGTGGGATC
TTCTATGACCTGGGCTCTGGCGCGGGACGGGCGGTTTTGGCAGCCGCCAA
GCTGGCCAAGTGGAAGAAGGCAATCGGGGTGGAGTATCTTGCAGGATTGC
ACAAGGAAGCTGTGAAGTACGAAGGGAAGTTTAAGCGATTGGGTGGCTCC
CCGACGCAATTTTTGAACAAGGATTTCACAGAGGTGAATATTTCTGATGC
TGAGGTTATTTTCGCGTACGCTACTAAGTACTCGAGGGATATTGATGATG
TGCTGGCCACAGCGCCTGCGGGCTCACGAGTCATTAGCTTGGATAGGCGG
CTAAACGCTCGCAAGTTTAAATTACTCAAGACAATCGAGGATCCGGCCGG
GGATTTGCAGTTGGTTTTTGGTTACGTGTATTTGACTCTCTAG
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Synonyms
Publications