jgi.p|Nanoce1779_2|577277, mRNA_422 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577277
Unique NamemRNA_422
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length888
Alignment locationscaffold_3:1041914..1042801 +

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Properties
Property NameValue
TranscriptId577363
TrackFilteredModels2
ProteinId577277
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1041914..1042801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577277gene_422Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577277mRNA_422-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_422CDS_422Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_422 ID=mRNA_422|Name=jgi.p|Nanoce1779_2|577277|organism=Nannochloropsis oceanica|type=mRNA|length=888bp
AGCTATGGCAGAGTCCCTTGTCTTCAACACAAGGGCGTTCAGTGCTGTCT
CTCAATGGCTGGAGCAACCCACATCCAGCAAGGATACTCAGCACGAGGCT
CAGGAGGAAAGCAGCAAAATGCCCGCGCCCGCGTCCAACTGGCGCCACAA
GCGGGCAGGGTTAGGTCTTGAGGCCAAAAAGACAAAAGACAAGGAGGCAA
AGGTAGAGGGATCAGTTGGCACGCTCCAGAAGCTGCTGCTGGGCAAGGGC
AAGAAATCCAAGCGGCAACGAGAGCAGGAGGAGGACGATGCGGCCGCCAC
CAAACGGCAGCAGAAAGAGGAGGACGATGAGGACGACGACGGTGAGCTCG
CAGACTCGAAGGCCCGTATATTTGTTGCCTCTACAAAGCCACCCTTAGGT
AGTACCATCGCCGGTGTACAGACTGAGGATCCCAAAAAGAAGAGGCGGAA
AAAGAAAAAGAAGGGCATCGTCAGTAATGCCGAAGGACAGGATACAGCAG
GGCAAGCATCTGCACCTGCTCCTCCATCAAACCGTATTCACACCATTGAG
GCCAGGTCCACAGCAAGTGAGTCTCTTTTCCAGAAGCCGAAGCCGCAGGA
AGAGCAGCACCCAGGTGGACAGGAGGAGGCTAGTGAACCCCGTAGACAGA
AGCGGACCAAAAAACGCTCCAAACAAAAAAATATCCGACGGGATAAACGC
AGCATAGGTCAGCGACCCGCACATCTACAGGAAGGCCACGAGTCATTCAC
TGGCCGGGCTATGACGGACGAGACGAGGCGACATCTCGGTCTGCCCGTCG
CTGCGATTCCTATCACGGCAGCCGACGTGAAATAACGCCTGCAGGCAAAA
TTAAACAAAGAGAAAATTAAGGGACCCAAAAAGTGCTT
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protein sequence of jgi.p|Nanoce1779_2|577277

>mRNA_422-protein ID=mRNA_422-protein|Name=jgi.p|Nanoce1779_2|577277|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MAESLVFNTRAFSAVSQWLEQPTSSKDTQHEAQEESSKMPAPASNWRHKR
AGLGLEAKKTKDKEAKVEGSVGTLQKLLLGKGKKSKRQREQEEDDAAATK
RQQKEEDDEDDDGELADSKARIFVASTKPPLGSTIAGVQTEDPKKKRRKK
KKKGIVSNAEGQDTAGQASAPAPPSNRIHTIEARSTASESLFQKPKPQEE
QHPGGQEEASEPRRQKRTKKRSKQKNIRRDKRSIGQRPAHLQEGHESFTG
RAMTDETRRHLGLPVAAIPITAADVK*
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mRNA from alignment at scaffold_3:1041914..1042801+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_422 ID=mRNA_422|Name=jgi.p|Nanoce1779_2|577277|organism=Nannochloropsis oceanica|type=mRNA|length=888bp|location=Sequence derived from alignment at scaffold_3:1041914..1042801+ (Nannochloropsis oceanica)
AGCTATGGCAGAGTCCCTTGTCTTCAACACAAGGGCGTTCAGTGCTGTCT
CTCAATGGCTGGAGCAACCCACATCCAGCAAGGATACTCAGCACGAGGCT
CAGGAGGAAAGCAGCAAAATGCCCGCGCCCGCGTCCAACTGGCGCCACAA
GCGGGCAGGGTTAGGTCTTGAGGCCAAAAAGACAAAAGACAAGGAGGCAA
AGGTAGAGGGATCAGTTGGCACGCTCCAGAAGCTGCTGCTGGGCAAGGGC
AAGAAATCCAAGCGGCAACGAGAGCAGGAGGAGGACGATGCGGCCGCCAC
CAAACGGCAGCAGAAAGAGGAGGACGATGAGGACGACGACGGTGAGCTCG
CAGACTCGAAGGCCCGTATATTTGTTGCCTCTACAAAGCCACCCTTAGGT
AGTACCATCGCCGGTGTACAGACTGAGGATCCCAAAAAGAAGAGGCGGAA
AAAGAAAAAGAAGGGCATCGTCAGTAATGCCGAAGGACAGGATACAGCAG
GGCAAGCATCTGCACCTGCTCCTCCATCAAACCGTATTCACACCATTGAG
GCCAGGTCCACAGCAAGTGAGTCTCTTTTCCAGAAGCCGAAGCCGCAGGA
AGAGCAGCACCCAGGTGGACAGGAGGAGGCTAGTGAACCCCGTAGACAGA
AGCGGACCAAAAAACGCTCCAAACAAAAAAATATCCGACGGGATAAACGC
AGCATAGGTCAGCGACCCGCACATCTACAGGAAGGCCACGAGTCATTCAC
TGGCCGGGCTATGACGGACGAGACGAGGCGACATCTCGGTCTGCCCGTCG
CTGCGATTCCTATCACGGCAGCCGACGTGAAATAACGCCTGCAGGCAAAA
TTAAACAAAGAGAAAATTAAGGGACCCAAAAAGTGCTT
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Coding sequence (CDS) from alignment at scaffold_3:1041914..1042801+

>mRNA_422 ID=mRNA_422|Name=jgi.p|Nanoce1779_2|577277|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_3:1041914..1042801+ (Nannochloropsis oceanica)
ATGGCAGAGTCCCTTGTCTTCAACACAAGGGCGTTCAGTGCTGTCTCTCA
ATGGCTGGAGCAACCCACATCCAGCAAGGATACTCAGCACGAGGCTCAGG
AGGAAAGCAGCAAAATGCCCGCGCCCGCGTCCAACTGGCGCCACAAGCGG
GCAGGGTTAGGTCTTGAGGCCAAAAAGACAAAAGACAAGGAGGCAAAGGT
AGAGGGATCAGTTGGCACGCTCCAGAAGCTGCTGCTGGGCAAGGGCAAGA
AATCCAAGCGGCAACGAGAGCAGGAGGAGGACGATGCGGCCGCCACCAAA
CGGCAGCAGAAAGAGGAGGACGATGAGGACGACGACGGTGAGCTCGCAGA
CTCGAAGGCCCGTATATTTGTTGCCTCTACAAAGCCACCCTTAGGTAGTA
CCATCGCCGGTGTACAGACTGAGGATCCCAAAAAGAAGAGGCGGAAAAAG
AAAAAGAAGGGCATCGTCAGTAATGCCGAAGGACAGGATACAGCAGGGCA
AGCATCTGCACCTGCTCCTCCATCAAACCGTATTCACACCATTGAGGCCA
GGTCCACAGCAAGTGAGTCTCTTTTCCAGAAGCCGAAGCCGCAGGAAGAG
CAGCACCCAGGTGGACAGGAGGAGGCTAGTGAACCCCGTAGACAGAAGCG
GACCAAAAAACGCTCCAAACAAAAAAATATCCGACGGGATAAACGCAGCA
TAGGTCAGCGACCCGCACATCTACAGGAAGGCCACGAGTCATTCACTGGC
CGGGCTATGACGGACGAGACGAGGCGACATCTCGGTCTGCCCGTCGCTGC
GATTCCTATCACGGCAGCCGACGTGAAATAA
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Synonyms
Publications