Properties
| Property Name | Value |
|---|
| TranscriptId | 630201 |
| Track | FilteredModels2 |
| ProteinId | 630115 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:38320..40331 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4219 ID=mRNA_4219|Name=jgi.p|Nanoce1779_2|630115|organism=Nannochloropsis oceanica|type=mRNA|length=1651bp
ACAGCCAGCATCACGGACGATGCAGAAAGGCGGGGGCAAAGGCTCCGCCC
TCACCGCCACCGCGAGTAATGCGAGTCGGGGGTCCATGGCTACCACTGCT
TCCATCCAATCATCAGCCAAAAAGAAGGGGAAACTGACACCAGCGGCGGC
AAGTGCGGACCCCGTTGGACCTACAGGCCTCATCCCACCAGAAGCCATCC
AGGCCGCGGCCAAGGAGCTGCATATGGCCGAGGTAAATGCAGAAGTCGCC
TCCTTCATCGCCACCACCGTCGAATACCATCTACGTGAAGTCCTGGAAGA
TGCCATCAAAGTCCAAACTCAAAGCCGCCGTCGTATCCTAACGGTTGATG
ACCTTACGGTTGCCATGCGCTTGCGTGGGCAACAGCCTATATATGGGTAC
GGCGCAGGAGCCCAGGCCATGCGGGATGTGACGACTGTAGATGGAAGACA
GAGTCAAGTGATTCTCTCCGAGTTGGGGGAGAGGAGGGAGGCGCTGGTGG
AGGCCATGCAAACGGAGTTGCCCAAGGTTCCCCGAGAAGTCGGCCTCCTC
CTTCACTGGCTCGCCATCGACGGCACACAGCCCCTCATTCCCCAAAACCC
TCCCCCAATTCTCCTCTCCTCCACCCCTGCCCCTCTCGAAGTCGAAGGCG
GCGCCCTCGTCATCCCTGAGAAGACCCACCCTCTCTCCCAAGAATTGTGG
CATTACTACAAAAAAATAGTCCAAGGCCTCATGACACCCAGCACACCCGA
AAGAGAAAAACGACACTTTTTCGCTGCCCTTGGGAGCGAGACGGGGCTAC
ACGAACTGGTGCCGTATCTATCATTGCATGTCCATAACACTGTGACGCAT
GCTGTGGGGGCAGGGGGAAGAGGGCCGTTGGACCCGCTCTGGGCGGCTAT
GAGGATATTTCGGTGCATGGTAGTGAATCCGAACATGCACTTGGAGCTGT
ATTTGCACCAGATGCTACCGTCACTGATGACGGTGATCGCCAATAATAGG
CTGGCGGCGACGAGTGTCAGTGCTGCTGCAGCGGCGGCAGTGGGAGGAGG
AGAAAGAGGAGGAGAAAACGGGGACCATTACGCGTTGAGGATTTTTGCGG
CCCAGACACTGGCGATGCTTGTGAGGACGTATGGGGGCGTATACAGGCCG
TTGGCGAGTGTGATTTGTAAAACGTTCGCAGAGAGGGTGGAGGAGTTTCT
AGGCGTAGAGCCGGCAGGGAAAGGAGCGCTGGCTACCCTGTACGGGACCA
TCACAGGGATCGTGCATTTAGGTGCAAGGCCCGTGGAAGTGGTGTTGTTG
CCGGTGGCGGGGCAGGTGTTGGGGAGGTTGAAGGGGATTATGGAGGACAG
GGGGGTAAAGCTACGGAAGAGGGTGGAGGCGCAGAATTGTTATAGTGCTT
TGGTGGCGGCAGTGGGGGAAGCAAGGGAACGGAGGATGGGGGAACCCTTA
GCGGCGGTGAGGATTGAGATGTTAGGCGGTATCGGAGTGGGAGTTGGGGT
GGGAGGAGTAGGGGGAGGAGGGGAAGGGGATGAGGGACGAGATGGTGGTG
GTAGGGTTGAAGGGAATTGGAAGGGGACTATCGCGGCAGAGTCGTTGGTG
CCATTTGCAGCGCAGAGCCTGGCATACCCTGAGCATTTGTTGGCATTGTA
A back to topprotein sequence of jgi.p|Nanoce1779_2|630115 >mRNA_4219-protein ID=mRNA_4219-protein|Name=jgi.p|Nanoce1779_2|630115|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MQKGGGKGSALTATASNASRGSMATTASIQSSAKKKGKLTPAAASADPVG
PTGLIPPEAIQAAAKELHMAEVNAEVASFIATTVEYHLREVLEDAIKVQT
QSRRRILTVDDLTVAMRLRGQQPIYGYGAGAQAMRDVTTVDGRQSQVILS
ELGERREALVEAMQTELPKVPREVGLLLHWLAIDGTQPLIPQNPPPILLS
STPAPLEVEGGALVIPEKTHPLSQELWHYYKKIVQGLMTPSTPEREKRHF
FAALGSETGLHELVPYLSLHVHNTVTHAVGAGGRGPLDPLWAAMRIFRCM
VVNPNMHLELYLHQMLPSLMTVIANNRLAATSVSAAAAAAVGGGERGGEN
GDHYALRIFAAQTLAMLVRTYGGVYRPLASVICKTFAERVEEFLGVEPAG
KGALATLYGTITGIVHLGARPVEVVLLPVAGQVLGRLKGIMEDRGVKLRK
RVEAQNCYSALVAAVGEARERRMGEPLAAVRIEMLGGIGVGVGVGGVGGG
GEGDEGRDGGGRVEGNWKGTIAAESLVPFAAQSLAYPEHLLAL* back to topmRNA from alignment at scaffold_10:38320..40331+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4219 ID=mRNA_4219|Name=jgi.p|Nanoce1779_2|630115|organism=Nannochloropsis oceanica|type=mRNA|length=2012bp|location=Sequence derived from alignment at scaffold_10:38320..40331+ (Nannochloropsis oceanica)
ACAGCCAGCATCACGGACGATGCAGAAAGGCGGGGGCAAAGGCTCCGCCC
TCACCGCCACCGCGAGTAATGCGAGTCGGGGGTCCATGGCTACCACTGCT
TCCATCCAATCATCAGCCAAAAAGAAGGGGAAACTGACACCAGCGGCGGC
AAGTGCGGACCCCGTTGGACCTACAGGCCTCATCCCACCAGAAGCCATCC
AGGCCGCGGCCAAGGAGCTGCATATGGCCGAGGTACGCAGGCATAGAGAT
GCAATGAAGCAGGGGGGGTAGGGCGGAGTAGCCTCGGTGGGACACAATAG
TGCACAAGCATTGTATTCAGTCCTCCCTCCCTCCCCTGCCCTCCCCCCTG
CCCTCCTCTTCCACCACATTAGGTAAATGCAGAAGTCGCCTCCTTCATCG
CCACCACCGTCGAATACCATCTACGTGAAGTCCTGGAAGATGCCATCAAA
GTCCAAACTCAAAGCCGCCGTCGTATCCTAACGGTTGATGACCTTACGGT
TGCCATGCGCTTGCGTGGGCAACAGCCTATATATGGGTACGGCGCAGGAG
CCCAGGCCATGCGGGATGTGACGACTGTAGATGGAAGACAGAGTCAAGTG
ATTCTCTCCGAGTTGGGGGAGAGGAGGGAGGCGCTGGTGGAGGCCATGCA
AACGGAGTTGCCCAAGGTAGGGGGGGAAGGAGGGAAGGAGGGAAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCAGTGCGCGATT
GTTGACTGGTTGGTGATTATCTTTATCGGTAGAAGTAGGAAAAAAGCGAC
TGTCTAAACAAACTCTCAAATTCTCCCTTGCCTCCTTTCCTCCCTCCCTC
CCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGTTCCCCGAGAAG
TCGGCCTCCTCCTTCACTGGCTCGCCATCGACGGCACACAGCCCCTCATT
CCCCAAAACCCTCCCCCAATTCTCCTCTCCTCCACCCCTGCCCCTCTCGA
AGTCGAAGGCGGCGCCCTCGTCATCCCTGAGAAGACCCACCCTCTCTCCC
AAGAATTGTGGCATTACTACAAAAAAATAGTCCAAGGCCTCATGACACCC
AGCACACCCGAAAGAGAAAAACGACACTTTTTCGCTGCCCTTGGGAGCGA
GACGGGGCTACACGAACTGGTGCCGTATCTATCATTGCATGTCCATAACA
CTGTGACGCATGCTGTGGGGGCAGGGGGAAGAGGGCCGTTGGACCCGCTC
TGGGCGGCTATGAGGATATTTCGGTGCATGGTAGTGAATCCGAACATGCA
CTTGGAGCTGTATTTGCACCAGATGCTACCGTCACTGATGACGGTGATCG
CCAATAATAGGCTGGCGGCGACGAGTGTCAGTGCTGCTGCAGCGGCGGCA
GTGGGAGGAGGAGAAAGAGGAGGAGAAAACGGGGACCATTACGCGTTGAG
GATTTTTGCGGCCCAGACACTGGCGATGCTTGTGAGGACGTATGGGGGCG
TATACAGGCCGTTGGCGAGTGTGATTTGTAAAACGTTCGCAGAGAGGGTG
GAGGAGTTTCTAGGCGTAGAGCCGGCAGGGAAAGGAGCGCTGGCTACCCT
GTACGGGACCATCACAGGGATCGTGCATTTAGGTGCAAGGCCCGTGGAAG
TGGTGTTGTTGCCGGTGGCGGGGCAGGTGTTGGGGAGGTTGAAGGGGATT
ATGGAGGACAGGGGGGTAAAGCTACGGAAGAGGGTGGAGGCGCAGAATTG
TTATAGTGCTTTGGTGGCGGCAGTGGGGGAAGCAAGGGAACGGAGGATGG
GGGAACCCTTAGCGGCGGTGAGGATTGAGATGTTAGGCGGTATCGGAGTG
GGAGTTGGGGTGGGAGGAGTAGGGGGAGGAGGGGAAGGGGATGAGGGACG
AGATGGTGGTGGTAGGGTTGAAGGGAATTGGAAGGGGACTATCGCGGCAG
AGTCGTTGGTGCCATTTGCAGCGCAGAGCCTGGCATACCCTGAGCATTTG
TTGGCATTGTAA back to topCoding sequence (CDS) from alignment at scaffold_10:38320..40331+ >mRNA_4219 ID=mRNA_4219|Name=jgi.p|Nanoce1779_2|630115|organism=Nannochloropsis oceanica|type=CDS|length=4896bp|location=Sequence derived from alignment at scaffold_10:38320..40331+ (Nannochloropsis oceanica)
ATGCAGAAAGGCGGGGGCAAAGGCTCCGCCCTCACCGCCACCGCGAGTAA
TGCGAGTCGGGGGTCCATGGCTACCACTGCTTCCATCCAATCATCAGCCA
AAAAGAAGGGGAAACTGACACCAGCGGCGGCAAGTGCGGACCCCGTTGGA
CCTACAGGCCTCATCCCACCAGAAGCCATCCAGGCCGCGGCCAAGGAGCT
GCATATGGCCGAGGTAAATGCAGAAGTCGCCTCCTTCATCGCCACCACCG
TCGAATACCATCTACGTGAAGTCCTGGAAGATGCCATCAAAGTCCAAACT
CAAAGCCGCCGTCGTATCCTAACGGTTGATGACCTTACGGTTGCCATGCG
CTTGCGTGGGCAACAGCCTATATATGGGTACGGCGCAGGAGCCCAGGCCA
TGCGGGATGTGACGACTGTAGATGGAAGACAGAGTCAAGTGATTCTCTCC
GAGTTGGGGGAGAGGAGGGAGGCGCTGGTGGAGGCCATGCAAACGGAGTT
GCCCAAGGTTCCCCGAGAAGTCGGCCTCCTCCTTCACTGGCTCGCCATCG
ACGGCACACAGCCCCTCATTCCCCAAAACCCTCCCCCAATTCTCCTCTCC
TCCACCCCTGCCCCTCTCGAAGTCGAAGGCGGCGCCCTCGTCATCCCTGA
GAAGACCCACCCTCTCTCCCAAGAATTGTGGCATTACTACAAAAAAATAG
TCCAAGGCCTCATGACACCCAGCACACCCGAAAGAGAAAAACGACACTTT
TTCGCTGCCCTTGGGAGCGAGACGGGGCTACACGAACTGGTGCCGTATCT
ATCATTGCATGTCCATAACACTGTGACGCATGCTGTGGGGGCAGGGGGAA
GAGGGCCGTTGGACCCGCTCTGGGCGGCTATGAGGATATTTCGGTGCATG
GTAGTGAATCCGAACATGCACTTGGAGCTGTATTTGCACCAGATGCTACC
GTCACTGATGACGGTGATCGCCAATAATAGGCTGGCGGCGACGAGTGTCA
GTGCTGCTGCAGCGGCGGCAGTGGGAGGAGGAGAAAGAGGAGGAGAAAAC
GGGGACCATTACGCGTTGAGGATTTTTGCGGCCCAGACACTGGCGATGCT
TGTGAGGACGTATGGGGGCGTATACAGGCCGTTGGCGAGTGTGATTTGTA
AAACGTTCGCAGAGAGGGTGGAGGAGTTTCTAGGCGTAGAGCCGGCAGGG
AAAGGAGCGCTGGCTACCCTGTACGGGACCATCACAGGGATCGTGCATTT
AGGTGCAAGGCCCGTGGAAGTGGTGTTGTTGCCGGTGGCGGGGCAGGTGT
TGGGGAGGTTGAAGGGGATTATGGAGGACAGGGGGGTAAAGCTACGGAAG
AGGGTGGAGGCGCAGAATTGTTATAGTGCTTTGGTGGCGGCAGTGGGGGA
AGCAAGGGAACGGAGGATGGGGGAACCCTTAGCGGCGGTGAGGATTGAGA
TGTTAGGCGGTATCGGAGTGGGAGTTGGGGTGGGAGGAGTAGGGGGAGGA
GGGGAAGGGGATGAGGGACGAGATGGTGGTGGTAGGGTTGAAGGGAATTG
GAAGGGGACTATCGCGGCAGAGTCGTTGGTGCCATTTGCAGCGCAGAGCC
TGGCATACCCTGAGCATTTGTTGGCATTGTAAATGCAGAAAGGCGGGGGC
AAAGGCTCCGCCCTCACCGCCACCGCGAGTAATGCGAGTCGGGGGTCCAT
GGCTACCACTGCTTCCATCCAATCATCAGCCAAAAAGAAGGGGAAACTGA
CACCAGCGGCGGCAAGTGCGGACCCCGTTGGACCTACAGGCCTCATCCCA
CCAGAAGCCATCCAGGCCGCGGCCAAGGAGCTGCATATGGCCGAGGTAAA
TGCAGAAGTCGCCTCCTTCATCGCCACCACCGTCGAATACCATCTACGTG
AAGTCCTGGAAGATGCCATCAAAGTCCAAACTCAAAGCCGCCGTCGTATC
CTAACGGTTGATGACCTTACGGTTGCCATGCGCTTGCGTGGGCAACAGCC
TATATATGGGTACGGCGCAGGAGCCCAGGCCATGCGGGATGTGACGACTG
TAGATGGAAGACAGAGTCAAGTGATTCTCTCCGAGTTGGGGGAGAGGAGG
GAGGCGCTGGTGGAGGCCATGCAAACGGAGTTGCCCAAGGTTCCCCGAGA
AGTCGGCCTCCTCCTTCACTGGCTCGCCATCGACGGCACACAGCCCCTCA
TTCCCCAAAACCCTCCCCCAATTCTCCTCTCCTCCACCCCTGCCCCTCTC
GAAGTCGAAGGCGGCGCCCTCGTCATCCCTGAGAAGACCCACCCTCTCTC
CCAAGAATTGTGGCATTACTACAAAAAAATAGTCCAAGGCCTCATGACAC
CCAGCACACCCGAAAGAGAAAAACGACACTTTTTCGCTGCCCTTGGGAGC
GAGACGGGGCTACACGAACTGGTGCCGTATCTATCATTGCATGTCCATAA
CACTGTGACGCATGCTGTGGGGGCAGGGGGAAGAGGGCCGTTGGACCCGC
TCTGGGCGGCTATGAGGATATTTCGGTGCATGGTAGTGAATCCGAACATG
CACTTGGAGCTGTATTTGCACCAGATGCTACCGTCACTGATGACGGTGAT
CGCCAATAATAGGCTGGCGGCGACGAGTGTCAGTGCTGCTGCAGCGGCGG
CAGTGGGAGGAGGAGAAAGAGGAGGAGAAAACGGGGACCATTACGCGTTG
AGGATTTTTGCGGCCCAGACACTGGCGATGCTTGTGAGGACGTATGGGGG
CGTATACAGGCCGTTGGCGAGTGTGATTTGTAAAACGTTCGCAGAGAGGG
TGGAGGAGTTTCTAGGCGTAGAGCCGGCAGGGAAAGGAGCGCTGGCTACC
CTGTACGGGACCATCACAGGGATCGTGCATTTAGGTGCAAGGCCCGTGGA
AGTGGTGTTGTTGCCGGTGGCGGGGCAGGTGTTGGGGAGGTTGAAGGGGA
TTATGGAGGACAGGGGGGTAAAGCTACGGAAGAGGGTGGAGGCGCAGAAT
TGTTATAGTGCTTTGGTGGCGGCAGTGGGGGAAGCAAGGGAACGGAGGAT
GGGGGAACCCTTAGCGGCGGTGAGGATTGAGATGTTAGGCGGTATCGGAG
TGGGAGTTGGGGTGGGAGGAGTAGGGGGAGGAGGGGAAGGGGATGAGGGA
CGAGATGGTGGTGGTAGGGTTGAAGGGAATTGGAAGGGGACTATCGCGGC
AGAGTCGTTGGTGCCATTTGCAGCGCAGAGCCTGGCATACCCTGAGCATT
TGTTGGCATTGTAAATGCAGAAAGGCGGGGGCAAAGGCTCCGCCCTCACC
GCCACCGCGAGTAATGCGAGTCGGGGGTCCATGGCTACCACTGCTTCCAT
CCAATCATCAGCCAAAAAGAAGGGGAAACTGACACCAGCGGCGGCAAGTG
CGGACCCCGTTGGACCTACAGGCCTCATCCCACCAGAAGCCATCCAGGCC
GCGGCCAAGGAGCTGCATATGGCCGAGGTAAATGCAGAAGTCGCCTCCTT
CATCGCCACCACCGTCGAATACCATCTACGTGAAGTCCTGGAAGATGCCA
TCAAAGTCCAAACTCAAAGCCGCCGTCGTATCCTAACGGTTGATGACCTT
ACGGTTGCCATGCGCTTGCGTGGGCAACAGCCTATATATGGGTACGGCGC
AGGAGCCCAGGCCATGCGGGATGTGACGACTGTAGATGGAAGACAGAGTC
AAGTGATTCTCTCCGAGTTGGGGGAGAGGAGGGAGGCGCTGGTGGAGGCC
ATGCAAACGGAGTTGCCCAAGGTTCCCCGAGAAGTCGGCCTCCTCCTTCA
CTGGCTCGCCATCGACGGCACACAGCCCCTCATTCCCCAAAACCCTCCCC
CAATTCTCCTCTCCTCCACCCCTGCCCCTCTCGAAGTCGAAGGCGGCGCC
CTCGTCATCCCTGAGAAGACCCACCCTCTCTCCCAAGAATTGTGGCATTA
CTACAAAAAAATAGTCCAAGGCCTCATGACACCCAGCACACCCGAAAGAG
AAAAACGACACTTTTTCGCTGCCCTTGGGAGCGAGACGGGGCTACACGAA
CTGGTGCCGTATCTATCATTGCATGTCCATAACACTGTGACGCATGCTGT
GGGGGCAGGGGGAAGAGGGCCGTTGGACCCGCTCTGGGCGGCTATGAGGA
TATTTCGGTGCATGGTAGTGAATCCGAACATGCACTTGGAGCTGTATTTG
CACCAGATGCTACCGTCACTGATGACGGTGATCGCCAATAATAGGCTGGC
GGCGACGAGTGTCAGTGCTGCTGCAGCGGCGGCAGTGGGAGGAGGAGAAA
GAGGAGGAGAAAACGGGGACCATTACGCGTTGAGGATTTTTGCGGCCCAG
ACACTGGCGATGCTTGTGAGGACGTATGGGGGCGTATACAGGCCGTTGGC
GAGTGTGATTTGTAAAACGTTCGCAGAGAGGGTGGAGGAGTTTCTAGGCG
TAGAGCCGGCAGGGAAAGGAGCGCTGGCTACCCTGTACGGGACCATCACA
GGGATCGTGCATTTAGGTGCAAGGCCCGTGGAAGTGGTGTTGTTGCCGGT
GGCGGGGCAGGTGTTGGGGAGGTTGAAGGGGATTATGGAGGACAGGGGGG
TAAAGCTACGGAAGAGGGTGGAGGCGCAGAATTGTTATAGTGCTTTGGTG
GCGGCAGTGGGGGAAGCAAGGGAACGGAGGATGGGGGAACCCTTAGCGGC
GGTGAGGATTGAGATGTTAGGCGGTATCGGAGTGGGAGTTGGGGTGGGAG
GAGTAGGGGGAGGAGGGGAAGGGGATGAGGGACGAGATGGTGGTGGTAGG
GTTGAAGGGAATTGGAAGGGGACTATCGCGGCAGAGTCGTTGGTGCCATT
TGCAGCGCAGAGCCTGGCATACCCTGAGCATTTGTTGGCATTGTAA back to top
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