jgi.p|Nanoce1779_2|18192, mRNA_4217 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|18192
Unique Name	mRNA_4217
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1698
Alignment location	scaffold_10:34892..36589 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	18278
Track	FilteredModels2
ProteinId	18192

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:34892..36589 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|18192	gene_4217	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|18192	mRNA_4217-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4217	CDS_4217	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:34892..36589+
coding sequence from alignment at scaffold_10:34892..36589+

mRNA sequence

>mRNA_4217 ID=mRNA_4217|Name=jgi.p|Nanoce1779_2|18192|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp
TACCCGGGCCACGATCATCGGTAGATCCGCCGTGGGGTCGACCCGCTGCA
TCTCCTGCCGCTGCGGGGCCATTTTGTCGCCCTTCTTGGTTGAATGTACG
TAGTACTGCGGGAGGGTGGCAGAACTCCTGGGACTAGGGGAGCAACAATG
TTGGTGCGGAGCCTTTGTTGAGCCCTGGGCGTACGGCTGCTCCTTTCCCA
GGTAGAAAGCTGCGTATGAGAAGTGTGTAGGGTTGAGTGTGATGCTTATG
TGCTAGCCAGCTTGGTCCAGAGGGGAGAGAACGAAGGCGGCATCTCTGTG
TCGAGCGATCGTCTTGTCTCCCCCCTGCCGCGCTCTCAACCCCCTTTGAC
ACGATAAATTGCGAACAGGTGGCCATGGGTAAAATGACGAGCACCACGAG
AACGACAAGAAGCTGCAGCACCCATTGTAGGACACGCTAACTTCTGAAAG
TCATCCTCGTGTCATCAAGCCCATCGACCTCCCCACCCCCCTCTCCGTTC
TACTCTCTCCGACCATCCTGCACACCACGCCTCCCGCAGCACGACAAAAT
GGAGTGGGAAATGACCTACATGGCTCAAAAAGCCATGCAGGCCCGGCGGG
AACGGCGGATGAAAGTGGTGGGGCGCGAGATTGCAGGGACCGACGACACG
CTCACAGTACGCTCAGAGGGCCAGGATGTGCTTGGGTTTGATCACGGCAG
CAACGACGATGTGGAGGCCGCGACTTCGCTGTTGGGCGGAGGCAAGAGCC
GATACCATCACCAAGTGATGGCAGCGGCCACTGCTTTAGTCATGGGAGGC
AGGAAAGAAGACGAAAAGGACAAGGGTGAGGCCGAACTTCGAGACCACTT
GCCTTGCCCGTGTCTGCTGGCGGCCTCTCTCTGCCCTTGCTATTTCTTGG
GTCGAGGCGCAACCCTGCTGACGAGGAAAGAACAAGAAGAGGGAAAAAGC
AACGGGGAAAGGGAAGTGGAGAGACACTTGAATAGTGAAGGGTGGTGGAC
CTGCCTGTCTTCCTGCTTGCTGGCGAGTGTATGCCCACTTCCCTGCCTGT
GGCCTACATTAGCGTGCACGCATCGGAGACGACAGAGAAAAGAAATCAAG
CAGCAATATCCACATTTTCCATCGTTGACTCCTTCTTCGTCTTCCTCATC
ATCATTATCGCCTTCCTCTTCAATGGGAAGGGGTAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTAGTGTGCAGATCATTAATTGTGAGTTGCTTGGG
CCTGGGCCTTTGGTGGAGGAGGTTGCTTTCTTGGAGGAAATGATGAGGGT
GAAAAGAAGAATGAGTATGAAAGGAGAGGCAGTAGAAGTAGAGATGACGC
CAGTGGTACCATCGGAAAAGCCTGTGGCTGCGAAAAAGGCAGACAGAGAA
AGGGAAGGAAGGGACCCCACGTGGGAACCGTTTGAAGGGTGGGACATGCG
CCCTATAGCTGTTACCGATGCTGCTGCCCTTGCTGCTGCTGCCGCCACCG
CCGCTGCTTCTACTACCTCTACTACTGAAGCTAGCGGTGCTGCCCACGAG
GCGGGTGCGGAAAGGACATGGATAGAAATGCAGGAGGACGAAAAGGCGAG
TTGGAGAGTAGTAACAGTACCCAAATGAAACGTAAAAATTCAAAAAGAAA
CTGCCAGCTGACAATGACCCAGACCATTTCCCAAGGACTCCGCTAGAG

protein sequence of jgi.p|Nanoce1779_2|18192

>mRNA_4217-protein ID=mRNA_4217-protein|Name=jgi.p|Nanoce1779_2|18192|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MEWEMTYMAQKAMQARRERRMKVVGREIAGTDDTLTVRSEGQDVLGFDHG
SNDDVEAATSLLGGGKSRYHHQVMAAATALVMGGRKEDEKDKGEAELRDH
LPCPCLLAASLCPCYFLGRGATLLTRKEQEEGKSNGEREVERHLNSEGWW
TCLSSCLLASVCPLPCLWPTLACTHRRRQRKEIKQQYPHFPSLTPSSSSS
SSLSPSSSMGRGSSSSSSSSSSSSVQIINCELLGPGPLVEEVAFLEEMMR
VKRRMSMKGEAVEVEMTPVVPSEKPVAAKKADREREGRDPTWEPFEGWDM
RPIAVTDAAALAAAAATAAASTTSTTEASGAAHEAGAERTWIEMQEDEKA
SWRVVTVPK*

mRNA from alignment at scaffold_10:34892..36589+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4217 ID=mRNA_4217|Name=jgi.p|Nanoce1779_2|18192|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp|location=Sequence derived from alignment at scaffold_10:34892..36589+ (Nannochloropsis oceanica)
TACCCGGGCCACGATCATCGGTAGATCCGCCGTGGGGTCGACCCGCTGCA
TCTCCTGCCGCTGCGGGGCCATTTTGTCGCCCTTCTTGGTTGAATGTACG
TAGTACTGCGGGAGGGTGGCAGAACTCCTGGGACTAGGGGAGCAACAATG
TTGGTGCGGAGCCTTTGTTGAGCCCTGGGCGTACGGCTGCTCCTTTCCCA
GGTAGAAAGCTGCGTATGAGAAGTGTGTAGGGTTGAGTGTGATGCTTATG
TGCTAGCCAGCTTGGTCCAGAGGGGAGAGAACGAAGGCGGCATCTCTGTG
TCGAGCGATCGTCTTGTCTCCCCCCTGCCGCGCTCTCAACCCCCTTTGAC
ACGATAAATTGCGAACAGGTGGCCATGGGTAAAATGACGAGCACCACGAG
AACGACAAGAAGCTGCAGCACCCATTGTAGGACACGCTAACTTCTGAAAG
TCATCCTCGTGTCATCAAGCCCATCGACCTCCCCACCCCCCTCTCCGTTC
TACTCTCTCCGACCATCCTGCACACCACGCCTCCCGCAGCACGACAAAAT
GGAGTGGGAAATGACCTACATGGCTCAAAAAGCCATGCAGGCCCGGCGGG
AACGGCGGATGAAAGTGGTGGGGCGCGAGATTGCAGGGACCGACGACACG
CTCACAGTACGCTCAGAGGGCCAGGATGTGCTTGGGTTTGATCACGGCAG
CAACGACGATGTGGAGGCCGCGACTTCGCTGTTGGGCGGAGGCAAGAGCC
GATACCATCACCAAGTGATGGCAGCGGCCACTGCTTTAGTCATGGGAGGC
AGGAAAGAAGACGAAAAGGACAAGGGTGAGGCCGAACTTCGAGACCACTT
GCCTTGCCCGTGTCTGCTGGCGGCCTCTCTCTGCCCTTGCTATTTCTTGG
GTCGAGGCGCAACCCTGCTGACGAGGAAAGAACAAGAAGAGGGAAAAAGC
AACGGGGAAAGGGAAGTGGAGAGACACTTGAATAGTGAAGGGTGGTGGAC
CTGCCTGTCTTCCTGCTTGCTGGCGAGTGTATGCCCACTTCCCTGCCTGT
GGCCTACATTAGCGTGCACGCATCGGAGACGACAGAGAAAAGAAATCAAG
CAGCAATATCCACATTTTCCATCGTTGACTCCTTCTTCGTCTTCCTCATC
ATCATTATCGCCTTCCTCTTCAATGGGAAGGGGTAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGTAGTGTGCAGATCATTAATTGTGAGTTGCTTGGG
CCTGGGCCTTTGGTGGAGGAGGTTGCTTTCTTGGAGGAAATGATGAGGGT
GAAAAGAAGAATGAGTATGAAAGGAGAGGCAGTAGAAGTAGAGATGACGC
CAGTGGTACCATCGGAAAAGCCTGTGGCTGCGAAAAAGGCAGACAGAGAA
AGGGAAGGAAGGGACCCCACGTGGGAACCGTTTGAAGGGTGGGACATGCG
CCCTATAGCTGTTACCGATGCTGCTGCCCTTGCTGCTGCTGCCGCCACCG
CCGCTGCTTCTACTACCTCTACTACTGAAGCTAGCGGTGCTGCCCACGAG
GCGGGTGCGGAAAGGACATGGATAGAAATGCAGGAGGACGAAAAGGCGAG
TTGGAGAGTAGTAACAGTACCCAAATGAAACGTAAAAATTCAAAAAGAAA
CTGCCAGCTGACAATGACCCAGACCATTTCCCAAGGACTCCGCTAGAG

Coding sequence (CDS) from alignment at scaffold_10:34892..36589+

>mRNA_4217 ID=mRNA_4217|Name=jgi.p|Nanoce1779_2|18192|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_10:34892..36589+ (Nannochloropsis oceanica)
ATGGAGTGGGAAATGACCTACATGGCTCAAAAAGCCATGCAGGCCCGGCG
GGAACGGCGGATGAAAGTGGTGGGGCGCGAGATTGCAGGGACCGACGACA
CGCTCACAGTACGCTCAGAGGGCCAGGATGTGCTTGGGTTTGATCACGGC
AGCAACGACGATGTGGAGGCCGCGACTTCGCTGTTGGGCGGAGGCAAGAG
CCGATACCATCACCAAGTGATGGCAGCGGCCACTGCTTTAGTCATGGGAG
GCAGGAAAGAAGACGAAAAGGACAAGGGTGAGGCCGAACTTCGAGACCAC
TTGCCTTGCCCGTGTCTGCTGGCGGCCTCTCTCTGCCCTTGCTATTTCTT
GGGTCGAGGCGCAACCCTGCTGACGAGGAAAGAACAAGAAGAGGGAAAAA
GCAACGGGGAAAGGGAAGTGGAGAGACACTTGAATAGTGAAGGGTGGTGG
ACCTGCCTGTCTTCCTGCTTGCTGGCGAGTGTATGCCCACTTCCCTGCCT
GTGGCCTACATTAGCGTGCACGCATCGGAGACGACAGAGAAAAGAAATCA
AGCAGCAATATCCACATTTTCCATCGTTGACTCCTTCTTCGTCTTCCTCA
TCATCATTATCGCCTTCCTCTTCAATGGGAAGGGGTAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGTAGTGTGCAGATCATTAATTGTGAGTTGCTTG
GGCCTGGGCCTTTGGTGGAGGAGGTTGCTTTCTTGGAGGAAATGATGAGG
GTGAAAAGAAGAATGAGTATGAAAGGAGAGGCAGTAGAAGTAGAGATGAC
GCCAGTGGTACCATCGGAAAAGCCTGTGGCTGCGAAAAAGGCAGACAGAG
AAAGGGAAGGAAGGGACCCCACGTGGGAACCGTTTGAAGGGTGGGACATG
CGCCCTATAGCTGTTACCGATGCTGCTGCCCTTGCTGCTGCTGCCGCCAC
CGCCGCTGCTTCTACTACCTCTACTACTGAAGCTAGCGGTGCTGCCCACG
AGGCGGGTGCGGAAAGGACATGGATAGAAATGCAGGAGGACGAAAAGGCG
AGTTGGAGAGTAGTAACAGTACCCAAATGA

Synonyms

Publications