jgi.p|Nanoce1779_2|18141, mRNA_4216 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|18141
Unique NamemRNA_4216
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1524
Alignment locationscaffold_10:33230..35073 -

Link to JBrowse

Properties
Property NameValue
TranscriptId18227
TrackFilteredModels2
ProteinId18141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:33230..35073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|18141gene_4216Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|18141mRNA_4216-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4216CDS_4216Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4216 ID=mRNA_4216|Name=jgi.p|Nanoce1779_2|18141|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
ACGCCCAGGGCTCAACAAAGGCTCCGCACCAACATTGTTGCTCCCCTAGT
CCCAGGAGTTCTGCCACCCTCCCGCAGTACTACGTACATTCAACCAAGAA
GGGCGACAAAATGGCCCCGCAGCGGCAGGAGATGCAGCGGGTCGACCCCA
CGGCGGATCTACCGATGATCGTGGCCCGGGTAAGACGGACTAGTGTGTGT
ATGCGCGTGTCTCCCCTCTCTGCCTTCCCTTTCCCTGGCACTCGACGCCC
CCTGTGTCCTTCACCTCCTTGTGTCTGCTCAACCTTGTGCTCTTTTCCCA
CTTGATGTCATCTACTTTTCCTGTCGTATGACATCCCATTGTATCCCATA
TCTCCCACATCACACATGGATACATCCACTCACCAGGGTGCTGTCCGCTT
GGCCAAGAAACATTACATCACTTCCTCTCTATGGGTGGCCGGTCTCATCG
TCCTGACCTTCTTCCAAGGCTTCGCCGTGCCTGATGATAGCTTGAAACAA
TACGAGCACGTCATCAAGGGCATCGACCTAAACAAGCTGTATGCTTTGCA
GAATGATGCGTGGGCCGCCGAAGAGATGTATCGGCAAAGTAAGGGCTGGT
TCTCGTGTGACGATGCTTGCCAGTCCTACAAGCGCGCCTGGCAATCGGCG
CAAGCCAAGCTGCACAATCTCGAAAAGGAGCAAGAAAAAAAACAACGCGA
AGCAAATAAGCACCTGGGTGTCTTCTCTACCTACGGAGTTGACGAAGCCA
AACAACTTTTTTGGAGATCATTTAAGTGGGGCAAGTCTTTCGGGCAGCGA
CAGACGATGTTCGACATGCTGTTCATGGGCTTTCGCGCCATGCGTCGGGA
TGAAGGCTTGTTGGAGTACACTTTGCAGATTTTGATCCACTTCCTGCTCA
ACATGGCGTTGGGTCTCTTCATGGCACTTACGGGTTTTACGCTCTCCCTC
TGGTCGTTCATCCGCTCCTACTCCCCTGATTTTTTGACGGGCTTGTTATT
CTTCGCGGGCGCTTTCGTGAGTGCCGCGGCGATGGTTGCAACCTACCTGA
CACTTTTATATGGCACGGCAGGCGCGACGGTGTTTGTGGGCGTGAAAGCT
TTGTTGAACAATGCTAATCGGTTGGAGCAAGAGGGAAGGGGTCCAAGGCG
AAACCTGCACTATGAGTAGAGGGATGTTGAGAACAGGGGGCTGCAGAGTG
AGATAAAGAAAGAATAAGCGAAGGAAAGACAGGTCATAGCGAGTAGAAGA
CTTTGTTTTAAATCTCATTCGACTAGACATGTCTTGGCTGAACTGGTCGC
GATGGCGCTCGTCTCACCAATGTGATACATGCCTTCTTCCCGTGTCCGTA
GGGGACGACTATTTTGCCGATACTTAGCCAAAGGCAGAGCATCATATCCC
CATAGGCTGGGCGCTGAGGTCTTGTGCCCTTGCACAATCTCGGAGCTTAT
GCTATTCTGACGCATTTATCTTCGTCATCGAATATGAAGAATCGTATATT
TTTCCTTTTCTTCGCTCTCTTTTG
back to top

protein sequence of jgi.p|Nanoce1779_2|18141

>mRNA_4216-protein ID=mRNA_4216-protein|Name=jgi.p|Nanoce1779_2|18141|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MDTSTHQGAVRLAKKHYITSSLWVAGLIVLTFFQGFAVPDDSLKQYEHVI
KGIDLNKLYALQNDAWAAEEMYRQSKGWFSCDDACQSYKRAWQSAQAKLH
NLEKEQEKKQREANKHLGVFSTYGVDEAKQLFWRSFKWGKSFGQRQTMFD
MLFMGFRAMRRDEGLLEYTLQILIHFLLNMALGLFMALTGFTLSLWSFIR
SYSPDFLTGLLFFAGAFVSAAAMVATYLTLLYGTAGATVFVGVKALLNNA
NRLEQEGRGPRRNLHYE*
back to top

mRNA from alignment at scaffold_10:33230..35073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4216 ID=mRNA_4216|Name=jgi.p|Nanoce1779_2|18141|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp|location=Sequence derived from alignment at scaffold_10:33230..35073- (Nannochloropsis oceanica)
ACGCCCAGGGCTCAACAAAGGCTCCGCACCAACATTGTTGCTCCCCTAGT
CCCAGGAGTTCTGCCACCCTCCCGCAGTACTACGTACATTCAACCAAGAA
GGGCGACAAAATGGCCCCGCAGCGGCAGGAGATGCAGCGGGTCGACCCCA
CGGCGGATCTACCGATGATCGTGGCCCGGGTAAGACGGACTAGTGTGTGT
ATGCGCGTGTCTCCCCTCTCTGCCTTCCCTTTCCCTGGCACTCGACGCCC
CCTGTGTCCTTCACCTCCTTGTGTCTGCTCAACCTTGTGCTCTTTTCCCA
CTTGATGTCATCTACTTTTCCTGTCGTATGACATCCCATTGTATCCCATA
TCTCCCACATCACACATGGATACATCCACTCACCAGGGTGCTGTCCGCTT
GGCCAAGAAACATTACATCACTTCCTCTCTATGGGTGGCCGGTCTCATCG
TCCTGACCTTCTTCCAAGGCTTCGCCGTGCCTGATGATAGCTTGAAACAA
TACGAGCACGTCATCAAGGGCATCGACCTAAACAAGCTGTATGCTTTGCA
GAATGATGCGTGGGCCGCCGAAGAGATGTATCGGCAAAGTAAGGGCTGGT
TCTCGTGTGACGATGCTTGCCAGGTAGGCGGGAAGGAGGGAAAGGGGGTG
CTTTGATCGAGCCCTCAGCAGGCAGCTTTGGCAGTTTGTGCTCTCCTTGA
CATATACATATCGTTTCTCCTCCCTGCATGCCTCAAGTGATTGCTTTCCC
TTTTCACCCTCCTTCCTTCCCTCCCTCCATTTCACAGTCCTACAAGCGCG
CCTGGCAATCGGCGCAAGCCAAGCTGCACAATCTCGAAAAGGAGCAAGAA
AAAAAACAACGCGAAGCAAATAAGCACCTGGGTGTCTTCTCTACCTACGG
AGTTGACGAAGCCAAACAACTTTTTTGGAGATCATTTAAGTGGGGCAAGT
CTTTCGGGCAGCGACAGACGATGTTCGACATGCTGTTCATGGGCTTTCGC
GCCATGCGTCGGGATGAAGGCTTGTTGGAGTACACTTTGCAGGCATGGAA
GGAATAGAAGGAAGAAAAGAGAGAAGGAGGGAGATAGCATAGGAGATTGC
GGAAGGAAAATGTCCTCGTTGCTTCGTTATCGTGTGTCCGTATCGTTCGT
GCAAATACTAACTCACCCTCAACCACACCCTCTCCCAACGATATTTAGAT
TTTGATCCACTTCCTGCTCAACATGGCGTTGGGTCTCTTCATGGCACTTA
CGGGTTTTACGCTCTCCCTCTGGTCGTTCATCCGCTCCTACTCCCCTGAT
TTTTTGACGGGCTTGTTATTCTTCGCGGGCGCTTTCGTGAGTGCCGCGGC
GATGGTTGCAACCTACCTGACACTTTTATATGGCACGGCAGGCGCGACGG
TGTTTGTGGGCGTGAAAGCTTTGTTGAACAATGCTAATCGGTTGGAGCAA
GAGGGAAGGGGTCCAAGGCGAAACCTGCACTATGAGTAGAGGGATGTTGA
GAACAGGGGGCTGCAGAGTGAGATAAAGAAAGAATAAGCGAAGGAAAGAC
AGGTCATAGCGAGTAGAAGACTTTGTTTTAAATCTCATTCGACTAGACAT
GTCTTGGCTGAACTGGTCGCGATGGCGCTCGTCTCACCAATGTGATACAT
GCCTTCTTCCCGTGTCCGTAGGGGACGACTATTTTGCCGATACTTAGCCA
AAGGCAGAGCATCATATCCCCATAGGCTGGGCGCTGAGGTCTTGTGCCCT
TGCACAATCTCGGAGCTTATGCTATTCTGACGCATTTATCTTCGTCATCG
AATATGAAGAATCGTATATTTTTCCTTTTCTTCGCTCTCTTTTG
back to top

Coding sequence (CDS) from alignment at scaffold_10:33230..35073-

>mRNA_4216 ID=mRNA_4216|Name=jgi.p|Nanoce1779_2|18141|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_10:33230..35073- (Nannochloropsis oceanica)
ATTTTGATCCACTTCCTGCTCAACATGGCGTTGGGTCTCTTCATGGCACT
TACGGGTTTTACGCTCTCCCTCTGGTCGTTCATCCGCTCCTACTCCCCTG
ATTTTTTGACGGGCTTGTTATTCTTCGCGGGCGCTTTCGTGAGTGCCGCG
GCGATGGTTGCAACCTACCTGACACTTTTATATGGCACGGCAGGCGCGAC
GGTGTTTGTGGGCGTGAAAGCTTTGTTGAACAATGCTAATCGGTTGGAGC
AAGAGGGAAGGGGTCCAAGGCGAAACCTGCACTATGAGTAGTCCTACAAG
CGCGCCTGGCAATCGGCGCAAGCCAAGCTGCACAATCTCGAAAAGGAGCA
AGAAAAAAAACAACGCGAAGCAAATAAGCACCTGGGTGTCTTCTCTACCT
ACGGAGTTGACGAAGCCAAACAACTTTTTTGGAGATCATTTAAGTGGGGC
AAGTCTTTCGGGCAGCGACAGACGATGTTCGACATGCTGTTCATGGGCTT
TCGCGCCATGCGTCGGGATGAAGGCTTGTTGGAGTACACTTTGCAGATGG
ATACATCCACTCACCAGGGTGCTGTCCGCTTGGCCAAGAAACATTACATC
ACTTCCTCTCTATGGGTGGCCGGTCTCATCGTCCTGACCTTCTTCCAAGG
CTTCGCCGTGCCTGATGATAGCTTGAAACAATACGAGCACGTCATCAAGG
GCATCGACCTAAACAAGCTGTATGCTTTGCAGAATGATGCGTGGGCCGCC
GAAGAGATGTATCGGCAAAGTAAGGGCTGGTTCTCGTGTGACGATGCTTG
CCAGATTTTGATCCACTTCCTGCTCAACATGGCGTTGGGTCTCTTCATGG
CACTTACGGGTTTTACGCTCTCCCTCTGGTCGTTCATCCGCTCCTACTCC
CCTGATTTTTTGACGGGCTTGTTATTCTTCGCGGGCGCTTTCGTGAGTGC
CGCGGCGATGGTTGCAACCTACCTGACACTTTTATATGGCACGGCAGGCG
CGACGGTGTTTGTGGGCGTGAAAGCTTTGTTGAACAATGCTAATCGGTTG
GAGCAAGAGGGAAGGGGTCCAAGGCGAAACCTGCACTATGAGTAGTCCTA
CAAGCGCGCCTGGCAATCGGCGCAAGCCAAGCTGCACAATCTCGAAAAGG
AGCAAGAAAAAAAACAACGCGAAGCAAATAAGCACCTGGGTGTCTTCTCT
ACCTACGGAGTTGACGAAGCCAAACAACTTTTTTGGAGATCATTTAAGTG
GGGCAAGTCTTTCGGGCAGCGACAGACGATGTTCGACATGCTGTTCATGG
GCTTTCGCGCCATGCGTCGGGATGAAGGCTTGTTGGAGTACACTTTGCAG
ATGGATACATCCACTCACCAGGGTGCTGTCCGCTTGGCCAAGAAACATTA
CATCACTTCCTCTCTATGGGTGGCCGGTCTCATCGTCCTGACCTTCTTCC
AAGGCTTCGCCGTGCCTGATGATAGCTTGAAACAATACGAGCACGTCATC
AAGGGCATCGACCTAAACAAGCTGTATGCTTTGCAGAATGATGCGTGGGC
CGCCGAAGAGATGTATCGGCAAAGTAAGGGCTGGTTCTCGTGTGACGATG
CTTGCCAGATTTTGATCCACTTCCTGCTCAACATGGCGTTGGGTCTCTTC
ATGGCACTTACGGGTTTTACGCTCTCCCTCTGGTCGTTCATCCGCTCCTA
CTCCCCTGATTTTTTGACGGGCTTGTTATTCTTCGCGGGCGCTTTCGTGA
GTGCCGCGGCGATGGTTGCAACCTACCTGACACTTTTATATGGCACGGCA
GGCGCGACGGTGTTTGTGGGCGTGAAAGCTTTGTTGAACAATGCTAATCG
GTTGGAGCAAGAGGGAAGGGGTCCAAGGCGAAACCTGCACTATGAGTAGT
CCTACAAGCGCGCCTGGCAATCGGCGCAAGCCAAGCTGCACAATCTCGAA
AAGGAGCAAGAAAAAAAACAACGCGAAGCAAATAAGCACCTGGGTGTCTT
CTCTACCTACGGAGTTGACGAAGCCAAACAACTTTTTTGGAGATCATTTA
AGTGGGGCAAGTCTTTCGGGCAGCGACAGACGATGTTCGACATGCTGTTC
ATGGGCTTTCGCGCCATGCGTCGGGATGAAGGCTTGTTGGAGTACACTTT
GCAGATGGATACATCCACTCACCAGGGTGCTGTCCGCTTGGCCAAGAAAC
ATTACATCACTTCCTCTCTATGGGTGGCCGGTCTCATCGTCCTGACCTTC
TTCCAAGGCTTCGCCGTGCCTGATGATAGCTTGAAACAATACGAGCACGT
CATCAAGGGCATCGACCTAAACAAGCTGTATGCTTTGCAGAATGATGCGT
GGGCCGCCGAAGAGATGTATCGGCAAAGTAAGGGCTGGTTCTCGTGTGAC
GATGCTTGCCAG
back to top
Synonyms
Publications