jgi.p|Nanoce1779_2|527976, mRNA_4215 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527976
Unique NamemRNA_4215
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1140
Alignment locationscaffold_10:30138..31511 -

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Properties
Property NameValue
TranscriptId528062
TrackFilteredModels2
ProteinId527976
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:30138..31511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527976gene_4215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527976mRNA_4215-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4215CDS_4215Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4215 ID=mRNA_4215|Name=jgi.p|Nanoce1779_2|527976|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp
ATGTGCACTGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCA
AGATAATTTCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACT
CTGTTTCCTTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCA
ATTTATGCAGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCA
GCGCGTGAGGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACC
CCCTTCCGGCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTA
CTCGACGTGGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAA
CGTGGAGGGAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAG
TGGTAAATTTGGGGGACTCCCGGTGTGTCGGCAGGAGTAGCAGTAATAGG
CGCATCTACGCCATCCCCCTCACCAACGATCATAAGCCCGACCGTCCAGA
TGAACTCCGCCGAATTGCCGCCATAGGTGGTCAAGTCGGATATCGTCAAT
ACATCTCATACCCCGCTATCTCCTCCTCCTCCTCCTCCTCCTCCACCTCC
TCCTCCACCTCCTCTTCCTCCACCTCCTCCTCCTCCTCCTTCAACCATAA
TCGCTCCTCCACGCACCCTCTTCCCACTCCTTCCATTACCTTGGGGCCGG
CGCGGATATGGTACACATGGCGAGGGGATCGGAACGGGCTGGCGATGAGT
CGCTCCTTCGGGGACAGCGCCGTGCACGCGGCCGGTGGCAGTAGCGAGCC
AGAGGTGGTGGAATATCGAGTGAGGGAAGGAGGGAGGGATGGCGAGGTAG
AGGAAGATATGTTCTTGATCTTGGCGAGCGACGGGGTGTGGGATGTGGTT
GACAATCAGGAGGCTGTTAAGGTAGTGGGGCACTTTATCGGTGTATCGAC
GGGAGGGAGGGAGGGAGGGGAGTGGGATGCAAAGGAGGCGGCGATAGCTT
TGGTGAGAATTGCGAGGAAACGGTGGAAGAGGGTGTCGCCGCAAATGATC
GACGATATCACTTGTATCGTTGTAAACCTCCAAGTAAAGGATAAAAACGA
GGAAGGGGAGGGGAGGAGATTCATAGGTAGCAGAGAATGA
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protein sequence of jgi.p|Nanoce1779_2|527976

>mRNA_4215-protein ID=mRNA_4215-protein|Name=jgi.p|Nanoce1779_2|527976|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MCTAQGLKSSHANWINQDNFILLDAEQQQQTSHSVSLPSSSLLPSSHPVS
IYAVLDGHGEQGHLVSQRVRQHLPHYLVQTQFDPLPAFRLMQNDLVMCPL
LDVACSGSTCVMVIARNVEGEGKGGSERGMILTVVNLGDSRCVGRSSSNR
RIYAIPLTNDHKPDRPDELRRIAAIGGQVGYRQYISYPAISSSSSSSSTS
SSTSSSSTSSSSSFNHNRSSTHPLPTPSITLGPARIWYTWRGDRNGLAMS
RSFGDSAVHAAGGSSEPEVVEYRVREGGRDGEVEEDMFLILASDGVWDVV
DNQEAVKVVGHFIGVSTGGREGGEWDAKEAAIALVRIARKRWKRVSPQMI
DDITCIVVNLQVKDKNEEGEGRRFIGSRE*
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mRNA from alignment at scaffold_10:30138..31511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4215 ID=mRNA_4215|Name=jgi.p|Nanoce1779_2|527976|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp|location=Sequence derived from alignment at scaffold_10:30138..31511- (Nannochloropsis oceanica)
ATGTGCACTGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCA
AGATAATTTCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACT
CTGTTTCCTTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCA
ATTTATGCAGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCA
GCGCGTGAGGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACC
CCCTTCCGGCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTA
CTCGACGTGGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAA
CGTGGAGGGAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAG
TGGTAAATTTGGGGGACTCCCGGTGTGTGTTGGGAAGAAGAAAGATGACA
GATTGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTTGGGGACA
GAATGAGGGAGAGGGGCAGGATCAGAAGCAGCAAGAGGAGAAGCGAGAGG
GGAAAGAGCAGTCAGATGAAAGCCTCGTCAGTTATCACCTTCAATCATCA
TCCTCTCCCTCTCCCTCCGCCTCTCCCTACGACCACCACACCAACAATAT
TCATATCAACAGCGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCC
CCCTCACCAACGATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATT
GCCGCCATAGGTGGTCAAGTCGGATATCGTCAATACATCTCATACCCCGC
TATCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCACCTCCTCTT
CCTCCACCTCCTCCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCAC
CCTCTTCCCACTCCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACAC
ATGGCGAGGGGATCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACA
GCGCCGTGCACGCGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATAT
CGAGTGAGGGAAGGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTT
GATCTTGGCGAGCGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTG
TTAAGGTAGTGGGGCACTTTATCGGTGTATCGACGGGAGGGAGGGAGGGA
GGGGAGTGGGATGCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAG
GAAACGGTGGAAGAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTA
TCGTTGTAAACCTCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGG
AGATTCATAGGTAGCAGAGAATGA
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Coding sequence (CDS) from alignment at scaffold_10:30138..31511-

>mRNA_4215 ID=mRNA_4215|Name=jgi.p|Nanoce1779_2|527976|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_10:30138..31511- (Nannochloropsis oceanica)
CGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAACG
ATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGGT
GGTCAAGTCGGATATCGTCAATACATCTCATACCCCGCTATCTCCTCCTC
CTCCTCCTCCTCCTCCACCTCCTCCTCCACCTCCTCTTCCTCCACCTCCT
CCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCACT
CCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGGA
TCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCACG
CGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGAA
GGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGAG
CGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTGG
GGCACTTTATCGGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGAT
GCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGAA
GAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTATCGTTGTAAACC
TCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGGT
AGCAGAGAATGAATGTGCACTGCTCAAGGGCTCAAGTCATCACATGCCAA
CTGGATCAACCAAGATAATTTCATCCTCCTCGACGCAGAGCAGCAGCAGC
AGACTTCGCACTCTGTTTCCTTGCCTTCTTCGTCGTTGTTGCCGTCTTCC
CATCCCGTGTCAATTTATGCAGTTTTGGACGGGCACGGCGAGCAGGGGCA
TCTGGTCAGCCAGCGCGTGAGGCAGCACCTCCCGCATTATCTCGTCCAGA
CACAGTTTGACCCCCTTCCGGCGTTTCGATTGATGCAGAACGACCTGGTC
ATGTGTCCCTTACTCGACGTGGCGTGCTCTGGGTCCACGTGCGTGATGGT
CATAGCGCGCAACGTGGAGGGAGAGGGGAAGGGAGGGAGTGAGAGAGGGA
TGATATTGACAGTGGTAAATTTGGGGGACTCCCGGTGTGTCGGCAGGAGT
AGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAACGATCATAAGCC
CGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGGTGGTCAAGTCG
GATATCGTCAATACATCTCATACCCCGCTATCTCCTCCTCCTCCTCCTCC
TCCTCCACCTCCTCCTCCACCTCCTCTTCCTCCACCTCCTCCTCCTCCTC
CTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCACTCCTTCCATTA
CCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGGATCGGAACGGG
CTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCACGCGGCCGGTGG
CAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGAAGGAGGGAGGG
ATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGAGCGACGGGGTG
TGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTGGGGCACTTTAT
CGGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGATGCAAAGGAGG
CGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGAAGAGGGTGTCG
CCGCAAATGATCGACGATATCACTTGTATCGTTGTAAACCTCCAAGTAAA
GGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGGTAGCAGAGAAT
GAATGTGCACTGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAAC
CAAGATAATTTCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCA
CTCTGTTTCCTTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGT
CAATTTATGCAGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGC
CAGCGCGTGAGGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGA
CCCCCTTCCGGCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCT
TACTCGACGTGGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGC
AACGTGGAGGGAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGAC
AGTGGTAAATTTGGGGGACTCCCGGTGTGT
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Synonyms
Publications