jgi.p|Nanoce1779_2|588374, mRNA_4214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588374
Unique NamemRNA_4214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length462
Alignment locationscaffold_10:29224..30305 +

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Properties
Property NameValue
TranscriptId588460
TrackFilteredModels2
ProteinId588374
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:29224..30305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588374gene_4214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588374mRNA_4214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4214CDS_4214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4214 ID=mRNA_4214|Name=jgi.p|Nanoce1779_2|588374|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
GCCTCCATGCATGTGGTTTGTGGGACTTTTCTTGCCGTTTCACGCACTTA
TGCGTACCCATTTTATACACCAATAGTACCGATTGCAGGCGCTGGTGCGG
TTGCTGCTGCATCTGCTGCTCCTTCTGCTGATGAAGGTGACGTAATTGGT
GGATTGGGACGCTGCTTCTGGCTCGGTGTATTTCCTCTTGTTGCTGGCTT
TGATACCTCCTGTCGCCATTCTCATCGACGCTCACTATATCTATATCATC
TGCTGCTGGGGCAAGTAAAATGAAGGAGGTCCCGCCACTTCTCCTCATTC
TCTGCTACCTATGAATCTCCTCCCCTCCCCTTCCTCGTTTTTATCCTTTA
CTTGGAGGTTTACAACGATACAAGTGATATCGTCGATCATTTGCGGCGAC
ACCCTCTTCCACCGTTTCCTCGCAATTCTCACCAAAGCTATCGCCGCCTC
CTTTGCATCCCA
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protein sequence of jgi.p|Nanoce1779_2|588374

>mRNA_4214-protein ID=mRNA_4214-protein|Name=jgi.p|Nanoce1779_2|588374|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MHVVCGTFLAVSRTYAYPFYTPIVPIAGAGAVAAASAAPSADEGDVIGGL
GRCFWLGVFPLVAGFDTSCRHSHRRSLYLYHLLLGQVK*
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mRNA from alignment at scaffold_10:29224..30305+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4214 ID=mRNA_4214|Name=jgi.p|Nanoce1779_2|588374|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp|location=Sequence derived from alignment at scaffold_10:29224..30305+ (Nannochloropsis oceanica)
GCCTCCATGCATGTGGTTTGTGGGACTTTTCTTGCCGTTTCACGCACTTA
TGCGTACCCATTTTATACACCAATAGTACCGATTGCAGGCGCTGGTGCGG
TTGCTGCTGCATCTGCTGCTCCTTCTGCTGATGAAGGTGACGTAATTGGT
GGATTGGGACGCTGCTTCTGGCTCGGTGTATTTCCTCTTGTTGCTGGCTT
TGATACCTCCTGTCGCCATTCTCATCGACGCTCACTATATCTAGAGTATA
TGTAAATAAAGATACATTAATCTTCTCTGCTAGTGTACATACACATATGT
ATAGAGTGTCAGTTTTTTTTCAGTCGCTCTCCCATTTCCCCTTCTGACGA
TTTTTCTTCCCTTTTCTCTGTGCTGGGGTCGTCCTCCCGTCTCTATTTTT
CCTCAACATCTTGGCTCATAGGTCTCCTTCTCTTACATTCTCTTCACAGT
CAATTGTAACACTTCCACAGCACTATTTCACTATCAGATGAGTCATTCCT
TCATCGTATTCCCTTTGTTCCCTCCCTTTGCTTTCGCTACTCTGCTCAGT
TTTCGTGCTTCTGGATATCCTTTTTGCTATTCGGTCCTGCCTTTGATATA
AGGCTGCCTTCAAGCTTTCTCCCTCTTCTCTCCAAGTAATAAACATATAA
GATACAACGGAAACTGACAATTCAGCAGTACCTAGTCTGCAATAAGGCCT
TTGGTGTTCTATCTCTCTCCTACTCCTCCTCCTACTCCTCCTCCTCCTCA
TTCATGCCCCGCTTCTTTCTTCTTATGACAGGGATTTCCCTCTCTGGAGT
ACTTCTCACCCGAGTAAGAATAACAATGGATGACCATGCGATCCCTCTGA
TTCCACCTACCTATATCATCTGCTGCTGGGGCAAGTAAAATGAAGGAGGT
CCCGCCACTTCTCCTCATTCTCTGCTACCTATGAATCTCCTCCCCTCCCC
TTCCTCGTTTTTATCCTTTACTTGGAGGTTTACAACGATACAAGTGATAT
CGTCGATCATTTGCGGCGACACCCTCTTCCACCGTTTCCTCGCAATTCTC
ACCAAAGCTATCGCCGCCTCCTTTGCATCCCA
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Coding sequence (CDS) from alignment at scaffold_10:29224..30305+

>mRNA_4214 ID=mRNA_4214|Name=jgi.p|Nanoce1779_2|588374|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_10:29224..30305+ (Nannochloropsis oceanica)
ATGCATGTGGTTTGTGGGACTTTTCTTGCCGTTTCACGCACTTATGCGTA
CCCATTTTATACACCAATAGTACCGATTGCAGGCGCTGGTGCGGTTGCTG
CTGCATCTGCTGCTCCTTCTGCTGATGAAGGTGACGTAATTGGTGGATTG
GGACGCTGCTTCTGGCTCGGTGTATTTCCTCTTGTTGCTGGCTTTGATAC
CTCCTGTCGCCATTCTCATCGACGCTCACTATATCTATATCATCTGCTGC
TGGGGCAAGTAAAATGAATGCATGTGGTTTGTGGGACTTTTCTTGCCGTT
TCACGCACTTATGCGTACCCATTTTATACACCAATAGTACCGATTGCAGG
CGCTGGTGCGGTTGCTGCTGCATCTGCTGCTCCTTCTGCTGATGAAGGTG
ACGTAATTGGTGGATTGGGACGCTGCTTCTGGCTCGGTGTATTTCCTCTT
GTTGCTGGCTTTGATACCTCCTGTCGCCATTCTCATCGACGCTCACTATA
TCTATATCATCTGCTGCTGGGGCAAGTAAAATGA
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Synonyms
Publications