Properties
| Property Name | Value |
|---|
| TranscriptId | 588458 |
| Track | FilteredModels2 |
| ProteinId | 588372 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:26456..28949 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4213 ID=mRNA_4213|Name=jgi.p|Nanoce1779_2|588372|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp
ACAGGCTCGCAACTCCTCGCCCACCATGTCCAGCTCGACGACTGCCGCGG
CCTCGATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAGCCC
ACCCAGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGGCATCGAGGC
TACCTGCGTATGGCCGATGGAGTTCATCAAGACACAGCTTCAGTTGCAGG
AAAAGCTGCCCGCGGGGGAGAAGCCCAAGTTTACGGGCATGATCGGGGGT
ATGCGATATACGGTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCT
GACCCCGACGCTGATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCT
CTAACGCTTACTTCAAAAAGATGTTGATGGACGAGAACGGGAAACTGACC
CCGGGCAAGAATTTCTTGGCGGGCGTAGGCGCTGGCACCATCGAGAGTAT
TTTTGTCGTGACTCCCGTCGAGACAGTTAAGACCAAGCTCATCCACTTGA
ACATGGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGGGCTG
TCGGGCGTGTACCAGGGCCTGGGCGCCACCATCATGAAGCAGGGCTCCAA
TCAAGGGCTGCGATTCATGTTCTTCAACGAGTACAAGAACTGGATTACAG
ACAACGGCAAGGTGCCTCTCACGCCCATCACCTCCTTCCTCGGCGGCATG
TCGGCGGGTTGCTTCTCTACCCTCTGCAACAACCCCTTGGACGTGATCAA
GACGCGCATGCAGGGCCTGGATGCAGCCAAGTACAGCAATGCCTTGGATT
GCGCGCGACAGCTGACCAAAACCGAAGGTTTCGGAGTGTTTCTCCGGGGA
CTGGTGCCGCGGCTGGGAAGGGTTGTGCCTGGGCAAGGGATTATTTTTAT
GTCCTTCGAGAGCATTCAGAACAAGCTGGTTGAGGTGTTGTTGTGAGGAG
GGGAGGGAAACAGGGAGGGAAGGAGAAGTGAAGTGTAACCTATTGATTTT
ATGTATTTGAAAAGAGCAAGGTCATATAGTGAGAGGAGGGCTGGTGGAAA
GACAGTGACGAGCCGATCTAAGGAGGGCAGGAGGAGAAAGAGGAGCAAAA
AGAAGAAATAGAGTGGGAGGAGGAGAGGAGAACAAGGAGAAGAAGTGGCG
GAGGGACTAGGAAATAGTGTGGCGTGCATGTGGTGCGTCACAAAGATAGG
TGTGCGTTTATGTGTATGTGTGTATGTGTGTATGTGGGTGTGGGGGGGGG
GTTAAGGTTTGGATCCGGGTCGCGCGTCACCGCCTGCCTGCCTGCTGCCG
CTCCTGCCGACAAGTCGATTTCGTGAATGCCGCTGTTGTCGGCATATATG
CGTGTGCATGTGTGTGTGTCTTCCCAGCCGTGCGGGTGTGTGGCCGGGGG
AATGGAGCCCGTGGCGACGAGAAGTTAAATCACGGTTAGAAGAAGGAAGG
GAGGAGGGGGAAGGAAGGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|588372 >mRNA_4213-protein ID=mRNA_4213-protein|Name=jgi.p|Nanoce1779_2|588372|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSSSTTAAASIVPLAASTSATKKKPTQMISLMAGSIAGGIEATCVWPMEF
IKTQLQLQEKLPAGEKPKFTGMIGGMRYTVANHGFLALYRGLTPTLISAF
PKAGIRFGSNAYFKKMLMDENGKLTPGKNFLAGVGAGTIESIFVVTPVET
VKTKLIHLNMEFVGGVKHIVAKEGLSGVYQGLGATIMKQGSNQGLRFMFF
NEYKNWITDNGKVPLTPITSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDA
AKYSNALDCARQLTKTEGFGVFLRGLVPRLGRVVPGQGIIFMSFESIQNK
LVEVLL* back to topmRNA from alignment at scaffold_10:26456..28949+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4213 ID=mRNA_4213|Name=jgi.p|Nanoce1779_2|588372|organism=Nannochloropsis oceanica|type=mRNA|length=2494bp|location=Sequence derived from alignment at scaffold_10:26456..28949+ (Nannochloropsis oceanica)
ACAGGCTCGCAACTCCTCGCCCACCATGTCCAGCTCGACGACTGCCGCGG
CCTCGATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAGCCC
ACCCAGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGGTACGTCTTG
TAGCTTCGTGTTGGCCAACGCGAGGGGACGACAGGCAGTGAGGGAGGCAC
CACGTGCTGTACGAAACGAAGGGTTTACGATTCGTGAGGCAGGGTCTACG
CAGCGACTTGTACCATTCATGCATGATTTCGGAATGCTGGGGGCATGGAC
AACTGTACTGATCCCTCTTCGTTCCTCGGTCCGTTTCTTTCTCCTACACA
CGTTCTGATTATTTTTAACAGGCATCGAGGCTACCTGCGTATGGCCGATG
GAGTTCATCAAGACACAGCTTCAGTTGCAGGAAAAGCTGCCCGCGGGGGA
GAAGCCCAAGTTTACGGGCATGATCGGGGGTAAGGACATGGGGGCAGGCA
GAGAGGAGCTAGGGAGGGAGGGTGGGCGGGCGGGAGGGTAGGAGAAGATG
TGCGATTCGCTCGAAGGGAAGAGAACCAATGGACAACACATACATATATG
CACATACGTATACCGAAAAAAGCCTGCCTTCATCGCGCACCCACCTTTCC
TTTCTACTCTCGTCTCCCTCTTGCCACCCTCTCTCCCAGGTATGCGATAT
ACGGTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCTGACCCCGAC
GCTGATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCTCTAACGCTT
ACTTCAAAAAGATGTTGATGGACGAGAACGGGAAACTGACCCCGGGCAAG
AATTTCTTGGCGGGCGTAGGCGCTGGTGAGCTAAGAGAGGGAGGGAGGGA
GGGCGGGAGGGAGGTGATGAGAACAGGGTCAAGTGCGACTGCATGCGTTG
ACTTTGAGATTAGCGAGCTGTTTTCGAGCTTCTGCACCGCATGGAAGATG
TGAGTGGCTTTCATTTGAAAATAACCTGTCATGGCTTACACACTCTTACT
CTCCCCTTTCCTCCCTCCCTCCTTGTCTCCCTCAGGCACCATCGAGAGTA
TTTTTGTCGTGACTCCCGTCGAGACAGTTAAGACCAAGCTCATCCACTTG
AACATGGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGGGCT
GTCGGGCGTGTACCAGGTGAGGAGGGAAGGAGGGAGGATGGGAGGAAAGG
AGGGAGGGAGAGAGTTCGAGTATTTGGAGTGTCTAGCAAAGGAAGAGCCG
AAGGGCTTGTTTTGCATCGGAAGAGGGAGGAAGTGAGAGGGGGATGGAGA
GAGGAGAGGCCTTATATCAGCGGCTCCGTAGATGATTATCATGTCTCACC
CTCCCTTCTTCCCTACCTCCCCTCTCCCTCTTTCCCTCCTCAGGGCCTGG
GCGCCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCGATTCATGTTC
TTCAACGAGTACAAGAACTGGATTACAGACAACGGCAAGGTGCCTCTCAC
GCCCATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGCTTCTCTACCC
TCTGCAACAACCCCTTGGGTGAGTACGCCCGCCCTCCCTCCCTCCCTCCC
TCCCTTTCTGCCTGCCCGCCCATTTTCCTCGCTTGCCTTTCTCTCACTTG
GAAAGCGCCCTCCACGAAACCCGACCAATCACTCCCTCCCCCCCGCCCTC
CCTCCCCCCCTAGACGTGATCAAGACGCGCATGCAGGGCCTGGATGCAGC
CAAGTACAGCAATGCCTTGGATTGCGCGCGACAGCTGACCAAAACCGAAG
GTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGGCTGGGAAGGGTTGTG
CCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAGCATTCAGAACAAGCT
GGTTGAGGTGTTGTTGTGAGGAGGGGAGGGAAACAGGGAGGGAAGGAGAA
GTGAAGTGTAACCTATTGATTTTATGTATTTGAAAAGAGCAAGGTCATAT
AGTGAGAGGAGGGCTGGTGGAAAGACAGTGACGAGCCGATCTAAGGAGGG
CAGGAGGAGAAAGAGGAGCAAAAAGAAGAAATAGAGTGGGAGGAGGAGAG
GAGAACAAGGAGAAGAAGTGGCGGAGGGACTAGGAAATAGTGTGGCGTGC
ATGTGGTGCGTCACAAAGATAGGTGTGCGTTTATGTGTATGTGTGTATGT
GTGTATGTGGGTGTGGGGGGGGGGTTAAGGTTTGGATCCGGGTCGCGCGT
CACCGCCTGCCTGCCTGCTGCCGCTCCTGCCGACAAGTCGATTTCGTGAA
TGCCGCTGTTGTCGGCATATATGCGTGTGCATGTGTGTGTGTCTTCCCAG
CCGTGCGGGTGTGTGGCCGGGGGAATGGAGCCCGTGGCGACGAGAAGTTA
AATCACGGTTAGAAGAAGGAAGGGAGGAGGGGGAAGGAAGGGGG back to topCoding sequence (CDS) from alignment at scaffold_10:26456..28949+ >mRNA_4213 ID=mRNA_4213|Name=jgi.p|Nanoce1779_2|588372|organism=Nannochloropsis oceanica|type=CDS|length=5526bp|location=Sequence derived from alignment at scaffold_10:26456..28949+ (Nannochloropsis oceanica)
ATGTCCAGCTCGACGACTGCCGCGGCCTCGATTGTGCCTTTGGCGGCATC
AACGTCCGCAACCAAGAAAAAGCCCACCCAGATGATTTCCCTCATGGCGG
GCTCCATTGCCGGCGGCATCGAGGCTACCTGCGTATGGCCGATGGAGTTC
ATCAAGACACAGCTTCAGTTGCAGGAAAAGCTGCCCGCGGGGGAGAAGCC
CAAGTTTACGGGCATGATCGGGGGTATGCGATATACGGTGGCAAATCACG
GGTTCTTGGCGCTCTATCGGGGGCTGACCCCGACGCTGATCAGCGCCTTC
CCCAAGGCCGGTATCCGTTTTGGCTCTAACGCTTACTTCAAAAAGATGTT
GATGGACGAGAACGGGAAACTGACCCCGGGCAAGAATTTCTTGGCGGGCG
TAGGCGCTGGCACCATCGAGAGTATTTTTGTCGTGACTCCCGTCGAGACA
GTTAAGACCAAGCTCATCCACTTGAACATGGAATTCGTGGGAGGGGTGAA
GCACATCGTGGCTAAGGAAGGGCTGTCGGGCGTGTACCAGGGCCTGGGCG
CCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCGATTCATGTTCTTC
AACGAGTACAAGAACTGGATTACAGACAACGGCAAGGTGCCTCTCACGCC
CATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGCTTCTCTACCCTCT
GCAACAACCCCTTGGACGTGATCAAGACGCGCATGCAGGGCCTGGATGCA
GCCAAGTACAGCAATGCCTTGGATTGCGCGCGACAGCTGACCAAAACCGA
AGGTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGGCTGGGAAGGGTTG
TGCCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAGCATTCAGAACAAG
CTGGTTGAGGTGTTGTTGTGAATGTCCAGCTCGACGACTGCCGCGGCCTC
GATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAGCCCACCC
AGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGGCATCGAGGCTACC
TGCGTATGGCCGATGGAGTTCATCAAGACACAGCTTCAGTTGCAGGAAAA
GCTGCCCGCGGGGGAGAAGCCCAAGTTTACGGGCATGATCGGGGGTATGC
GATATACGGTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCTGACC
CCGACGCTGATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCTCTAA
CGCTTACTTCAAAAAGATGTTGATGGACGAGAACGGGAAACTGACCCCGG
GCAAGAATTTCTTGGCGGGCGTAGGCGCTGGCACCATCGAGAGTATTTTT
GTCGTGACTCCCGTCGAGACAGTTAAGACCAAGCTCATCCACTTGAACAT
GGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGGGCTGTCGG
GCGTGTACCAGGGCCTGGGCGCCACCATCATGAAGCAGGGCTCCAATCAA
GGGCTGCGATTCATGTTCTTCAACGAGTACAAGAACTGGATTACAGACAA
CGGCAAGGTGCCTCTCACGCCCATCACCTCCTTCCTCGGCGGCATGTCGG
CGGGTTGCTTCTCTACCCTCTGCAACAACCCCTTGGACGTGATCAAGACG
CGCATGCAGGGCCTGGATGCAGCCAAGTACAGCAATGCCTTGGATTGCGC
GCGACAGCTGACCAAAACCGAAGGTTTCGGAGTGTTTCTCCGGGGACTGG
TGCCGCGGCTGGGAAGGGTTGTGCCTGGGCAAGGGATTATTTTTATGTCC
TTCGAGAGCATTCAGAACAAGCTGGTTGAGGTGTTGTTGTGAATGTCCAG
CTCGACGACTGCCGCGGCCTCGATTGTGCCTTTGGCGGCATCAACGTCCG
CAACCAAGAAAAAGCCCACCCAGATGATTTCCCTCATGGCGGGCTCCATT
GCCGGCGGCATCGAGGCTACCTGCGTATGGCCGATGGAGTTCATCAAGAC
ACAGCTTCAGTTGCAGGAAAAGCTGCCCGCGGGGGAGAAGCCCAAGTTTA
CGGGCATGATCGGGGGTATGCGATATACGGTGGCAAATCACGGGTTCTTG
GCGCTCTATCGGGGGCTGACCCCGACGCTGATCAGCGCCTTCCCCAAGGC
CGGTATCCGTTTTGGCTCTAACGCTTACTTCAAAAAGATGTTGATGGACG
AGAACGGGAAACTGACCCCGGGCAAGAATTTCTTGGCGGGCGTAGGCGCT
GGCACCATCGAGAGTATTTTTGTCGTGACTCCCGTCGAGACAGTTAAGAC
CAAGCTCATCCACTTGAACATGGAATTCGTGGGAGGGGTGAAGCACATCG
TGGCTAAGGAAGGGCTGTCGGGCGTGTACCAGGGCCTGGGCGCCACCATC
ATGAAGCAGGGCTCCAATCAAGGGCTGCGATTCATGTTCTTCAACGAGTA
CAAGAACTGGATTACAGACAACGGCAAGGTGCCTCTCACGCCCATCACCT
CCTTCCTCGGCGGCATGTCGGCGGGTTGCTTCTCTACCCTCTGCAACAAC
CCCTTGGACGTGATCAAGACGCGCATGCAGGGCCTGGATGCAGCCAAGTA
CAGCAATGCCTTGGATTGCGCGCGACAGCTGACCAAAACCGAAGGTTTCG
GAGTGTTTCTCCGGGGACTGGTGCCGCGGCTGGGAAGGGTTGTGCCTGGG
CAAGGGATTATTTTTATGTCCTTCGAGAGCATTCAGAACAAGCTGGTTGA
GGTGTTGTTGTGAATGTCCAGCTCGACGACTGCCGCGGCCTCGATTGTGC
CTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAGCCCACCCAGATGATT
TCCCTCATGGCGGGCTCCATTGCCGGCGGCATCGAGGCTACCTGCGTATG
GCCGATGGAGTTCATCAAGACACAGCTTCAGTTGCAGGAAAAGCTGCCCG
CGGGGGAGAAGCCCAAGTTTACGGGCATGATCGGGGGTATGCGATATACG
GTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCTGACCCCGACGCT
GATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCTCTAACGCTTACT
TCAAAAAGATGTTGATGGACGAGAACGGGAAACTGACCCCGGGCAAGAAT
TTCTTGGCGGGCGTAGGCGCTGGCACCATCGAGAGTATTTTTGTCGTGAC
TCCCGTCGAGACAGTTAAGACCAAGCTCATCCACTTGAACATGGAATTCG
TGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGGGCTGTCGGGCGTGTAC
CAGGGCCTGGGCGCCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCG
ATTCATGTTCTTCAACGAGTACAAGAACTGGATTACAGACAACGGCAAGG
TGCCTCTCACGCCCATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGC
TTCTCTACCCTCTGCAACAACCCCTTGGACGTGATCAAGACGCGCATGCA
GGGCCTGGATGCAGCCAAGTACAGCAATGCCTTGGATTGCGCGCGACAGC
TGACCAAAACCGAAGGTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGG
CTGGGAAGGGTTGTGCCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAG
CATTCAGAACAAGCTGGTTGAGGTGTTGTTGTGAATGTCCAGCTCGACGA
CTGCCGCGGCCTCGATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAG
AAAAAGCCCACCCAGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGG
CATCGAGGCTACCTGCGTATGGCCGATGGAGTTCATCAAGACACAGCTTC
AGTTGCAGGAAAAGCTGCCCGCGGGGGAGAAGCCCAAGTTTACGGGCATG
ATCGGGGGTATGCGATATACGGTGGCAAATCACGGGTTCTTGGCGCTCTA
TCGGGGGCTGACCCCGACGCTGATCAGCGCCTTCCCCAAGGCCGGTATCC
GTTTTGGCTCTAACGCTTACTTCAAAAAGATGTTGATGGACGAGAACGGG
AAACTGACCCCGGGCAAGAATTTCTTGGCGGGCGTAGGCGCTGGCACCAT
CGAGAGTATTTTTGTCGTGACTCCCGTCGAGACAGTTAAGACCAAGCTCA
TCCACTTGAACATGGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAG
GAAGGGCTGTCGGGCGTGTACCAGGGCCTGGGCGCCACCATCATGAAGCA
GGGCTCCAATCAAGGGCTGCGATTCATGTTCTTCAACGAGTACAAGAACT
GGATTACAGACAACGGCAAGGTGCCTCTCACGCCCATCACCTCCTTCCTC
GGCGGCATGTCGGCGGGTTGCTTCTCTACCCTCTGCAACAACCCCTTGGA
CGTGATCAAGACGCGCATGCAGGGCCTGGATGCAGCCAAGTACAGCAATG
CCTTGGATTGCGCGCGACAGCTGACCAAAACCGAAGGTTTCGGAGTGTTT
CTCCGGGGACTGGTGCCGCGGCTGGGAAGGGTTGTGCCTGGGCAAGGGAT
TATTTTTATGTCCTTCGAGAGCATTCAGAACAAGCTGGTTGAGGTGTTGT
TGTGAATGTCCAGCTCGACGACTGCCGCGGCCTCGATTGTGCCTTTGGCG
GCATCAACGTCCGCAACCAAGAAAAAGCCCACCCAGATGATTTCCCTCAT
GGCGGGCTCCATTGCCGGCGGCATCGAGGCTACCTGCGTATGGCCGATGG
AGTTCATCAAGACACAGCTTCAGTTGCAGGAAAAGCTGCCCGCGGGGGAG
AAGCCCAAGTTTACGGGCATGATCGGGGGTATGCGATATACGGTGGCAAA
TCACGGGTTCTTGGCGCTCTATCGGGGGCTGACCCCGACGCTGATCAGCG
CCTTCCCCAAGGCCGGTATCCGTTTTGGCTCTAACGCTTACTTCAAAAAG
ATGTTGATGGACGAGAACGGGAAACTGACCCCGGGCAAGAATTTCTTGGC
GGGCGTAGGCGCTGGCACCATCGAGAGTATTTTTGTCGTGACTCCCGTCG
AGACAGTTAAGACCAAGCTCATCCACTTGAACATGGAATTCGTGGGAGGG
GTGAAGCACATCGTGGCTAAGGAAGGGCTGTCGGGCGTGTACCAGGGCCT
GGGCGCCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCGATTCATGT
TCTTCAACGAGTACAAGAACTGGATTACAGACAACGGCAAGGTGCCTCTC
ACGCCCATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGCTTCTCTAC
CCTCTGCAACAACCCCTTGGACGTGATCAAGACGCGCATGCAGGGCCTGG
ATGCAGCCAAGTACAGCAATGCCTTGGATTGCGCGCGACAGCTGACCAAA
ACCGAAGGTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGGCTGGGAAG
GGTTGTGCCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAGCATTCAGA
ACAAGCTGGTTGAGGTGTTGTTGTGA back to top
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