jgi.p|Nanoce1779_2|588360, mRNA_4210 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588360
Unique NamemRNA_4210
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length910
Alignment locationscaffold_10:15789..17232 +

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Properties
Property NameValue
TranscriptId588446
TrackFilteredModels2
ProteinId588360
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:15789..17232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588360gene_4210Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588360mRNA_4210-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4210CDS_4210Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4210 ID=mRNA_4210|Name=jgi.p|Nanoce1779_2|588360|organism=Nannochloropsis oceanica|type=mRNA|length=910bp
TGGCGACAAAAAATCATTTGGCAACGGGCGGTCGGATATCTTTTGCCTTC
ACAATTCTCACATAAACCCGTAAACCCAAACATCCAACCATTTCAAGACG
GTCATGCATCGTCTGGCCTTCCAGGCGGCGGGTCGTTGCGCCTGTCGTCG
TCCTCCCGCACGACCCCCACCCTGCTTTTCCTCCACCCGCAGCTCAGGTC
CAACACCCTCAAGCCTCCTCCTGGTCCCGCTGCCGAAGCTGGCCCCGCAC
ATGACTAGCGGCAAGGTGCGATGGCTCAAGGCAGAAGGAGAAGCATTTGC
ATGTTACGACATCATTGCCGAAGTATCGACATCGACCTTGGTCGAGGAAG
CGTATCGCGACGGCAAATTTAAGGGAGAGGTGACCCTGTTGATTGAGGCA
CAAGAAGACGGCTACCTGGCCCGGATCTTTCAGCACGACCACACAAACGA
CATACCTGTGGGTACACCAGTAGGTGTGCTTTGCGAGGAAATAAACGAGC
TGGCCGATACGGCGGCGGTAGCAGCGGTGGCCCAGGTGGGGTCGGCATTG
CCAAAGGACTTGTATTCACCCGAGGCCCAACAGAAGTGGCGAGTATGGGC
CGGGTGGCAAGCCTACTTGAAAGATGGGGGAGATGGTGGAGACTGCAGCA
GTTGATGTGCTTAGAGGATACGGTCGGAGATACGGTTTTTAGCTTCCCTC
ATTCTCATCTACAGCAATTGTTGTTAGCTGTAAGGCGCTCTGGGTTGGAT
GCTTACCTCGATGGGGTGCTAAACAAGGAGGACTGATGTAGAAAGCCAAC
AGAAATTGTGAACAAATGCTACATAACAGCCATGTACATGAAGACAGAAA
CAGAGATTTTTGATGAGCAAAGAGATTGGAAGAACACGTATTTAAATGAA
AGGCAGGTGA
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protein sequence of jgi.p|Nanoce1779_2|588360

>mRNA_4210-protein ID=mRNA_4210-protein|Name=jgi.p|Nanoce1779_2|588360|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MHRLAFQAAGRCACRRPPARPPPCFSSTRSSGPTPSSLLLVPLPKLAPHM
TSGKVRWLKAEGEAFACYDIIAEVSTSTLVEEAYRDGKFKGEVTLLIEAQ
EDGYLARIFQHDHTNDIPVGTPVGVLCEEINELADTAAVAAVAQVGSALP
KDLYSPEAQQKWRVWAGWQAYLKDGGDGGDCSS*
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mRNA from alignment at scaffold_10:15789..17232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4210 ID=mRNA_4210|Name=jgi.p|Nanoce1779_2|588360|organism=Nannochloropsis oceanica|type=mRNA|length=1444bp|location=Sequence derived from alignment at scaffold_10:15789..17232+ (Nannochloropsis oceanica)
TGGCGACAAAAAATCATTTGGCAACGGGCGGTCGGATATCTTTTGCCTTC
ACAATTCTCACATAAACCCGTAAACCCAAACATCCAACCATTTCAAGACG
GTCATGCATCGTCTGGCCTTCCAGGCGGCGGGTCGTTGCGCCTGTCGTCG
TCCTCCCGCACGACCCCCACCCTGCTTTTCCTCCACCCGCAGCTCAGGTC
CAACACCCTCAAGCCTCCTCCTGGTCCCGCTGCCGAAGCTGGCCCCGCAC
ATGACTAGCGGCAAGGTGCGATGGCTCAAGGCAGAAGGAGAAGCATTTGC
ATGTTACGACATCATTGCCGAAGTATCGACATCGACCTTGGTCGAGGAAG
CGTATCGCGACGGCAAATTTAAGGGAGAGGTGACCCTGTTGATTGAGGCA
CAAGAAGACGGCTACCTGGCCCGGATCTTTCAGCACGACCACACAAACGA
CATACCTGTGGGTACACCAGTAGGTGTGCTTTGCGAGGAAATAAACGAGC
TGGCCGATACGGCGGCGGTAGCAGCGGTGGCCCAGGTGGGGTCGGCATTG
CCAAAGGACTTGTATTCACCCGAGGCCCAACAGAAGTGGCGAGTATGGGC
CGGGTGGCAAGCCTACTTGAAAGATGGGGGAGATGGTGGAGACTGCAGCA
GTTGATGTGCTTAGAGGATACGGTCGGAGATACGGTAAGCGTGTCTTATC
GACGAGAGTGGAATAAATGATGTTGTGCATCAAGTGTGCCTTTTTGCCCC
CACGGACACTTTTGCTTCCATGCGTCATGTGGTCTTCCTTTACAAAGGCA
CGAGAAACAATTTTCCAGGCGGTCTAGTTCTGCGGATCGAGACTGGGGGC
GTCATGCTTCTGACGACTGATTCGCTTTGAAAGGCCTGCCAAATTCCTCA
TCATGCTCAGGTGTCTAAATGTGTAAGAGTATGAACGGATTCATGACTGA
GTCAATCGTGTTGTCTGCGTATGCTTGTGTGCTTGTGTGCCTATACGTCT
GATCTTTCTCATTCATGCGATGCTGTATGCTTGTGTGCTTGTGTGCCTAT
ACGTCTGATCTTTCTCATTCATGCGATGCTGTCTAAATCTAGGAGAATCG
TCTTTCTACGTTCTGCGGCGCATGAAAAAAAGTGAAATCTCTGACAGCTA
ATTCTCCTATCCGTCCTTGCCTCTCTCCCTCCAATCCCTCTCTCTCGTCC
TTCTCCCCTCAAACCTAGGTTTTTAGCTTCCCTCATTCTCATCTACAGCA
ATTGTTGTTAGCTGTAAGGCGCTCTGGGTTGGATGCTTACCTCGATGGGG
TGCTAAACAAGGAGGACTGATGTAGAAAGCCAACAGAAATTGTGAACAAA
TGCTACATAACAGCCATGTACATGAAGACAGAAACAGAGATTTTTGATGA
GCAAAGAGATTGGAAGAACACGTATTTAAATGAAAGGCAGGTGA
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Coding sequence (CDS) from alignment at scaffold_10:15789..17232+

>mRNA_4210 ID=mRNA_4210|Name=jgi.p|Nanoce1779_2|588360|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_10:15789..17232+ (Nannochloropsis oceanica)
ATGCATCGTCTGGCCTTCCAGGCGGCGGGTCGTTGCGCCTGTCGTCGTCC
TCCCGCACGACCCCCACCCTGCTTTTCCTCCACCCGCAGCTCAGGTCCAA
CACCCTCAAGCCTCCTCCTGGTCCCGCTGCCGAAGCTGGCCCCGCACATG
ACTAGCGGCAAGGTGCGATGGCTCAAGGCAGAAGGAGAAGCATTTGCATG
TTACGACATCATTGCCGAAGTATCGACATCGACCTTGGTCGAGGAAGCGT
ATCGCGACGGCAAATTTAAGGGAGAGGTGACCCTGTTGATTGAGGCACAA
GAAGACGGCTACCTGGCCCGGATCTTTCAGCACGACCACACAAACGACAT
ACCTGTGGGTACACCAGTAGGTGTGCTTTGCGAGGAAATAAACGAGCTGG
CCGATACGGCGGCGGTAGCAGCGGTGGCCCAGGTGGGGTCGGCATTGCCA
AAGGACTTGTATTCACCCGAGGCCCAACAGAAGTGGCGAGTATGGGCCGG
GTGGCAAGCCTACTTGAAAGATGGGGGAGATGGTGGAGACTGCAGCAGTT
GA
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Synonyms
Publications