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Properties
Property Name | Value |
TranscriptId | 523863 |
Track | FilteredModels2 |
ProteinId | 523777 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_3 | supercontig | scaffold_3:1039444..1041272 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_421 ID=mRNA_421|Name=jgi.p|Nanoce1779_2|523777|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp ATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCTGCGCGGAACGGC GGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGCCCCAGCGGTCCC AACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTGCAAGGCCTGCGG GTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGCGACCATGGCGTT GGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATCCGCAGCGTGGGG ACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGAGAGAGTGCGTAC TTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGTGGATTTCAAGCA ATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGGAATCAGATGTGC TAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCTGGGTTGGGCTAT GATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTGCAGCATAACCGG ATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGTATGACGTGATTA TGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCGCCGTCGGACGAG GGTGGTGAGCCTGCCAAGACAGGCGTGGCGATGGTGGATCTGGCCACGGG TCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTCACGGCCGGCATCAGA CAGGAAGAGGACAAAAGATTGATTGCTCGTTGATGGAGACGCAGTTGGCG TGTTTGGTCAACATTGGACAGAACTGGTTATTGGGGGCTACGACGGAGGC GAAGAGATGGGGCACGGCCCATGAGAGCATCGTGCCATATCAGGCGTTCA AATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAAACAGTTT GAAAAGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAGTCGAGACCCTCG TTTTCGCACCAACAAGGACCGCACTGAGCATCGCAAGATTCTCATCAATC TGTTGCAGACTTTTTTTAGCACCAAGACACGCGTGGAGCTTGATGCCATA TTTAAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAATATAGGCGA AGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGGTAAAGGTAC CGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCTGTCAAATAT TCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCTGGGCCAACA CACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTGATGACGTGC AGCGCTTGAGGAAGGCCAAAATCGTATGTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|523777 >mRNA_421-protein ID=mRNA_421-protein|Name=jgi.p|Nanoce1779_2|523777|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp MKRKQGYGLAVLLRGTAACRTAPRQPPPLPQRSQPLSTTSPTPGPLQGLR VLDLTRVLAGPFATMALGDLGADVIKIEHPQRGDDTRAWGPPFVGGESAY FLSVNRNKRSVGVDFKQSEGLEIVRRLASESDVLIENFLPGKLEKAGLGY DVLSELNPRLIYCSITGFGSDGIAAQRPGYDVIMQGMYGLMSITGSPSDE GGEPAKTGVAMVDLATGLFAHGAILAALHGRHQTGRGQKIDCSLMETQLA CLVNIGQNWLLGATTEAKRWGTAHESIVPYQAFKCKDGKYMIGAGNDKQF EKLAVAVGMPELSRDPRFRTNKDRTEHRKILINLLQTFFSTKTRVELDAI FKAMGGLPYGPLRNIGEAFQDAQAQHRKMVVKVPHPTIGELPLAGLPVKY SSTKPSIRRAPPLLGQHTEEVLQECLGYTVDDVQRLRKAKIVC* back to topmRNA from alignment at scaffold_3:1039444..1041272+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_421 ID=mRNA_421|Name=jgi.p|Nanoce1779_2|523777|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp|location=Sequence derived from alignment at scaffold_3:1039444..1041272+ (Nannochloropsis oceanica) ATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCTGCGCGGAACGGC
GGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGCCCCAGCGGTCCC
AACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTGCAAGGCCTGCGG
GTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGCGACCATGGCGTT
GGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATCCGCAGCGTGGGG
ACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGAGAGAGTGCGTAC
TTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGTGGATTTCAAGCA
ATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGGAATCAGATGTGC
TAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCTGGGTTGGGCTAT
GATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTGCAGCATAACCGG
ATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGTATGACGTGATTA
TGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCGCCGTCGGACGAG
GGTGGTGAGCCTGCCAAGACAGGTGTGTACGTAGGGTAGGGGGTTATTTC
TCTTCTCATTTTAAACGCGAAACCTACCCCAAAAGACTCACTCCTTCCCT
TCTCGCCTCTTCTATCACAATCTACACAAACATGCAGGCGTGGCGATGGT
GGATCTGGCCACGGGTCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTC
ACGGCCGGCATCAGACAGGAAGAGGACAAAAGATTGATTGCTCGTTGATG
GAGACGCAGTTGGCGTGTTTGGTCAACATTGGACAGAACTGGTTATTGGG
GGCTACGACGGAGGCGAAGAGATGGTGAGAAAGACGTGGTAAATGCGTGA
GTGGATGGTCGCTGGAGGGGCCAGAGATACAGGGACAGATTTAAAATGGA
CTATTCTATAATATTTAGCATGCACGATTATAAATGCGATCTATTTCTCC
GCAGGGGCACGGCCCATGAGAGCATCGTGCCATATCAGGCGTTCAAATGT
AAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAAACAGGTCAGACG
GGGGGCAACAGCTAGGAAAGAGGAGGATATGTATACGGTTTCCTACGCTT
ACTTCTTTTCCTCCATCTCGCCCTTTTTCAGTTTGAAAAGCTGGCCGTGG
CTGTTGGAATGCCCGAGCTCAGTCGAGACCCTCGTTTTCGCACCAACAAG
GACCGCACTGAGCATCGCAAGATTCTCATCAATCTGTTGCAGACTTTTTT
TAGCACCAAGACACGCGTGGAGCTTGATGCCATATTTAAGGTACGCCCAC
GACTGGAAGGGTGAAAGGGTAGATATTCCTTTCTCCTTTCATTTTCCATC
TCTTGATCACCGGCATCACCATATTTCCATCCGCCCCCTCCTCTTTCTGT
CCTCACATACAATTTTGCTTTCATCTCCAACATCATAATTATCATCACGC
TAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAATATAGGCGAAGC
CTTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGGTAAAGGTACCGC
ACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCTGTCAAATATTCT
AGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCTGGGCCAACACAC
TGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTGATGACGTGCAGC
GCTTGAGGAAGGCCAAAATCGTATGTTAA back to topCoding sequence (CDS) from alignment at scaffold_3:1039444..1041272+ >mRNA_421 ID=mRNA_421|Name=jgi.p|Nanoce1779_2|523777|organism=Nannochloropsis oceanica|type=CDS|length=6660bp|location=Sequence derived from alignment at scaffold_3:1039444..1041272+ (Nannochloropsis oceanica) ATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCTGCGCGGAACGGC GGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGCCCCAGCGGTCCC AACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTGCAAGGCCTGCGG GTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGCGACCATGGCGTT GGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATCCGCAGCGTGGGG ACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGAGAGAGTGCGTAC TTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGTGGATTTCAAGCA ATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGGAATCAGATGTGC TAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCTGGGTTGGGCTAT GATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTGCAGCATAACCGG ATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGTATGACGTGATTA TGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCGCCGTCGGACGAG GGTGGTGAGCCTGCCAAGACAGGCGTGGCGATGGTGGATCTGGCCACGGG TCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTCACGGCCGGCATCAGA CAGGAAGAGGACAAAAGATTGATTGCTCGTTGATGGAGACGCAGTTGGCG TGTTTGGTCAACATTGGACAGAACTGGTTATTGGGGGCTACGACGGAGGC GAAGAGATGGGGCACGGCCCATGAGAGCATCGTGCCATATCAGGCGTTCA AATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAAACAGTTT GAAAAGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAGTCGAGACCCTCG TTTTCGCACCAACAAGGACCGCACTGAGCATCGCAAGATTCTCATCAATC TGTTGCAGACTTTTTTTAGCACCAAGACACGCGTGGAGCTTGATGCCATA TTTAAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAATATAGGCGA AGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGGTAAAGGTAC CGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCTGTCAAATAT TCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCTGGGCCAACA CACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTGATGACGTGC AGCGCTTGAGGAAGGCCAAAATCGTATGTTAAATGAAGCGGAAACAAGGT TATGGCCTCGCAGTGCTGCTGCGCGGAACGGCGGCGTGCCGTACAGCTCC AAGACAACCTCCTCCCCTGCCCCAGCGGTCCCAACCCCTATCTACTACTA GCCCCACTCCTGGCCCCCTGCAAGGCCTGCGGGTTTTAGACTTGACGCGC GTGCTGGCAGGCCCCTTTGCGACCATGGCGTTGGGCGATTTGGGCGCGGA TGTAATTAAGATCGAGCATCCGCAGCGTGGGGACGACACCCGGGCTTGGG GGCCGCCTTTTGTGGGAGGAGAGAGTGCGTACTTCTTGAGCGTAAACCGG AACAAACGAAGCGTCGGCGTGGATTTCAAGCAATCCGAGGGCTTGGAGAT TGTGCGGCGACTGGCGTCGGAATCAGATGTGCTAATCGAGAACTTCTTGC CGGGGAAATTGGAGAAAGCTGGGTTGGGCTATGATGTCCTGAGTGAGCTG AATCCGCGTCTTATCTATTGCAGCATAACCGGATTTGGCAGTGACGGAAT TGCGGCACAACGTCCAGGGTATGACGTGATTATGCAGGGAATGTATGGAT TGATGAGTATCACGGGCTCGCCGTCGGACGAGGGTGGTGAGCCTGCCAAG ACAGGCGTGGCGATGGTGGATCTGGCCACGGGTCTCTTCGCACACGGAGC CATCCTGGCTGCCCTTCACGGCCGGCATCAGACAGGAAGAGGACAAAAGA TTGATTGCTCGTTGATGGAGACGCAGTTGGCGTGTTTGGTCAACATTGGA CAGAACTGGTTATTGGGGGCTACGACGGAGGCGAAGAGATGGGGCACGGC CCATGAGAGCATCGTGCCATATCAGGCGTTCAAATGTAAAGACGGGAAGT ACATGATAGGCGCAGGCAACGACAAACAGTTTGAAAAGCTGGCCGTGGCT GTTGGAATGCCCGAGCTCAGTCGAGACCCTCGTTTTCGCACCAACAAGGA CCGCACTGAGCATCGCAAGATTCTCATCAATCTGTTGCAGACTTTTTTTA GCACCAAGACACGCGTGGAGCTTGATGCCATATTTAAGGCAATGGGCGGC CTGCCTTATGGACCGCTCCGCAATATAGGCGAAGCCTTTCAGGACGCCCA AGCCCAACATCGCAAAATGGTGGTAAAGGTACCGCACCCTACCATCGGTG AGCTGCCCCTTGCCGGCTTGCCTGTCAAATATTCTAGCACTAAGCCTTCC ATCCGCCGGGCGCCGCCTTTGCTGGGCCAACACACTGAAGAGGTGCTGCA GGAGTGCCTGGGGTACACGGTTGATGACGTGCAGCGCTTGAGGAAGGCCA AAATCGTATGTTAAATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTG CTGCGCGGAACGGCGGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCT GCCCCAGCGGTCCCAACCCCTATCTACTACTAGCCCCACTCCTGGCCCCC TGCAAGGCCTGCGGGTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTT GCGACCATGGCGTTGGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCA TCCGCAGCGTGGGGACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAG GAGAGAGTGCGTACTTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGC GTGGATTTCAAGCAATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTC GGAATCAGATGTGCTAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAG CTGGGTTGGGCTATGATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTAT TGCAGCATAACCGGATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGG GTATGACGTGATTATGCAGGGAATGTATGGATTGATGAGTATCACGGGCT CGCCGTCGGACGAGGGTGGTGAGCCTGCCAAGACAGGCGTGGCGATGGTG GATCTGGCCACGGGTCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTCA CGGCCGGCATCAGACAGGAAGAGGACAAAAGATTGATTGCTCGTTGATGG AGACGCAGTTGGCGTGTTTGGTCAACATTGGACAGAACTGGTTATTGGGG GCTACGACGGAGGCGAAGAGATGGGGCACGGCCCATGAGAGCATCGTGCC ATATCAGGCGTTCAAATGTAAAGACGGGAAGTACATGATAGGCGCAGGCA ACGACAAACAGTTTGAAAAGCTGGCCGTGGCTGTTGGAATGCCCGAGCTC AGTCGAGACCCTCGTTTTCGCACCAACAAGGACCGCACTGAGCATCGCAA GATTCTCATCAATCTGTTGCAGACTTTTTTTAGCACCAAGACACGCGTGG AGCTTGATGCCATATTTAAGGCAATGGGCGGCCTGCCTTATGGACCGCTC CGCAATATAGGCGAAGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAAT GGTGGTAAAGGTACCGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCT TGCCTGTCAAATATTCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCT TTGCTGGGCCAACACACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACAC GGTTGATGACGTGCAGCGCTTGAGGAAGGCCAAAATCGTATGTTAAATGA AGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCTGCGCGGAACGGCGGCG TGCCGTACAGCTCCAAGACAACCTCCTCCCCTGCCCCAGCGGTCCCAACC CCTATCTACTACTAGCCCCACTCCTGGCCCCCTGCAAGGCCTGCGGGTTT TAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGCGACCATGGCGTTGGGC GATTTGGGCGCGGATGTAATTAAGATCGAGCATCCGCAGCGTGGGGACGA CACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGAGAGAGTGCGTACTTCT TGAGCGTAAACCGGAACAAACGAAGCGTCGGCGTGGATTTCAAGCAATCC GAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGGAATCAGATGTGCTAAT CGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCTGGGTTGGGCTATGATG TCCTGAGTGAGCTGAATCCGCGTCTTATCTATTGCAGCATAACCGGATTT GGCAGTGACGGAATTGCGGCACAACGTCCAGGGTATGACGTGATTATGCA GGGAATGTATGGATTGATGAGTATCACGGGCTCGCCGTCGGACGAGGGTG GTGAGCCTGCCAAGACAGGCGTGGCGATGGTGGATCTGGCCACGGGTCTC TTCGCACACGGAGCCATCCTGGCTGCCCTTCACGGCCGGCATCAGACAGG AAGAGGACAAAAGATTGATTGCTCGTTGATGGAGACGCAGTTGGCGTGTT TGGTCAACATTGGACAGAACTGGTTATTGGGGGCTACGACGGAGGCGAAG AGATGGGGCACGGCCCATGAGAGCATCGTGCCATATCAGGCGTTCAAATG TAAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAAACAGTTTGAAA AGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAGTCGAGACCCTCGTTTT CGCACCAACAAGGACCGCACTGAGCATCGCAAGATTCTCATCAATCTGTT GCAGACTTTTTTTAGCACCAAGACACGCGTGGAGCTTGATGCCATATTTA AGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAATATAGGCGAAGCC TTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGGTAAAGGTACCGCA CCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCTGTCAAATATTCTA GCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCTGGGCCAACACACT GAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTGATGACGTGCAGCG CTTGAGGAAGGCCAAAATCGTATGTTAAATGAAGCGGAAACAAGGTTATG GCCTCGCAGTGCTGCTGCGCGGAACGGCGGCGTGCCGTACAGCTCCAAGA CAACCTCCTCCCCTGCCCCAGCGGTCCCAACCCCTATCTACTACTAGCCC CACTCCTGGCCCCCTGCAAGGCCTGCGGGTTTTAGACTTGACGCGCGTGC TGGCAGGCCCCTTTGCGACCATGGCGTTGGGCGATTTGGGCGCGGATGTA ATTAAGATCGAGCATCCGCAGCGTGGGGACGACACCCGGGCTTGGGGGCC GCCTTTTGTGGGAGGAGAGAGTGCGTACTTCTTGAGCGTAAACCGGAACA AACGAAGCGTCGGCGTGGATTTCAAGCAATCCGAGGGCTTGGAGATTGTG CGGCGACTGGCGTCGGAATCAGATGTGCTAATCGAGAACTTCTTGCCGGG GAAATTGGAGAAAGCTGGGTTGGGCTATGATGTCCTGAGTGAGCTGAATC CGCGTCTTATCTATTGCAGCATAACCGGATTTGGCAGTGACGGAATTGCG GCACAACGTCCAGGGTATGACGTGATTATGCAGGGAATGTATGGATTGAT GAGTATCACGGGCTCGCCGTCGGACGAGGGTGGTGAGCCTGCCAAGACAG GCGTGGCGATGGTGGATCTGGCCACGGGTCTCTTCGCACACGGAGCCATC CTGGCTGCCCTTCACGGCCGGCATCAGACAGGAAGAGGACAAAAGATTGA TTGCTCGTTGATGGAGACGCAGTTGGCGTGTTTGGTCAACATTGGACAGA ACTGGTTATTGGGGGCTACGACGGAGGCGAAGAGATGGGGCACGGCCCAT GAGAGCATCGTGCCATATCAGGCGTTCAAATGTAAAGACGGGAAGTACAT GATAGGCGCAGGCAACGACAAACAGTTTGAAAAGCTGGCCGTGGCTGTTG GAATGCCCGAGCTCAGTCGAGACCCTCGTTTTCGCACCAACAAGGACCGC ACTGAGCATCGCAAGATTCTCATCAATCTGTTGCAGACTTTTTTTAGCAC CAAGACACGCGTGGAGCTTGATGCCATATTTAAGGCAATGGGCGGCCTGC CTTATGGACCGCTCCGCAATATAGGCGAAGCCTTTCAGGACGCCCAAGCC CAACATCGCAAAATGGTGGTAAAGGTACCGCACCCTACCATCGGTGAGCT GCCCCTTGCCGGCTTGCCTGTCAAATATTCTAGCACTAAGCCTTCCATCC GCCGGGCGCCGCCTTTGCTGGGCCAACACACTGAAGAGGTGCTGCAGGAG TGCCTGGGGTACACGGTTGATGACGTGCAGCGCTTGAGGAAGGCCAAAAT CGTATGTTAA back to top
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