jgi.p|Nanoce1779_2|646046, mRNA_4209 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|646046
Unique NamemRNA_4209
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1487
Alignment locationscaffold_10:14163..15649 -

Link to JBrowse

Properties
Property NameValue
TranscriptId646132
TrackFilteredModels2
ProteinId646046
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:14163..15649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646046gene_4209Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646046mRNA_4209-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4209CDS_4209Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4209 ID=mRNA_4209|Name=jgi.p|Nanoce1779_2|646046|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp
ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC
CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG
ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT
GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAATTGC
CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC
CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC
AAGTGGCTGGCTGAATTGCCATTTGTCGCAAGTAAGGAAAGAAACCAAGG
CATCAACCGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC
TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC
GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCAACAGGAGCAGAAGGC
ACAAGTCGAAGAAGAGATTCAGGGTCAACAAGACGAAAGCAGACAGGAGC
AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT
CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT
GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT
CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC
CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT
CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC
CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC
CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG
GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG
ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG
AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT
CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG
GTTTGGCCTGGTTGATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA
CAGTGCGAGAGAGAGGGAGGGGAATGAGGGGAAGGAGGAAGAGTGAAGGT
CAGAGATGGGGTAAGAGGGAGGGAAAAGGGAACAGGACGAGGCGGGCTGG
GGGGAAGAATGAAGGTCTGAGGTCGAAGAGGGATAAAACTGAGGAGAGTG
AAGATGGGTGTAAAGGAGGGACGGTATTTCAAAGAGGCAAAGGAGGATAC
TCCGTCAATTAAGAAGACAAGAAAAAAGAAGACACGACAACAAGGGGAAG
GAGATAGATGGAGAGGGAGGGAGAGCAAACACCCGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|646046

>mRNA_4209-protein ID=mRNA_4209-protein|Name=jgi.p|Nanoce1779_2|646046|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MVESDAYYEASESADPSISPLETQAREYMEQHVDPVLTKALTEIHLHKPH
DACQALLNFFQERQEIATGTAVVKHGRGKHYAEPAAAYDGVRVTDDAPAP
KWLAELPFVASKERNQGINRWYAVHHVLPILARLLRHLAVQQPSPDDGKL
DACVVAFLIRHQQEQKAQVEEEIQGQQDESRQEQHLLTAVTSSATVATAH
PPSPSPSPLIHVLVLGLEGSGKSTILAALQGDLSPSPPPSLSSSNSATPT
LVTLERRRLPDDYTTRLGFFDVPGSRIAQHQLWPSLYAQAQALVWVGDAT
QASRWEEEKAVLRACLGHEEVKGKPVWMLVNKQDTGLPHHSLGRVEEEVG
SIMKEAGHVVLRVDGCIADAKSNFGVLDPALEEGLAWLIAAIGCERGERG
QCEREGGE*
back to top

mRNA from alignment at scaffold_10:14163..15649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4209 ID=mRNA_4209|Name=jgi.p|Nanoce1779_2|646046|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at scaffold_10:14163..15649- (Nannochloropsis oceanica)
ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC
CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG
ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT
GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAATTGC
CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC
CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC
AAGTGGCTGGCTGAATTGCCATTTGTCGCAAGTAAGGAAAGAAACCAAGG
CATCAACCGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC
TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC
GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCAACAGGAGCAGAAGGC
ACAAGTCGAAGAAGAGATTCAGGGTCAACAAGACGAAAGCAGACAGGAGC
AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT
CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT
GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT
CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC
CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT
CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC
CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC
CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG
GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG
ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG
AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT
CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG
GTTTGGCCTGGTTGATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA
CAGTGCGAGAGAGAGGGAGGGGAATGAGGGGAAGGAGGAAGAGTGAAGGT
CAGAGATGGGGTAAGAGGGAGGGAAAAGGGAACAGGACGAGGCGGGCTGG
GGGGAAGAATGAAGGTCTGAGGTCGAAGAGGGATAAAACTGAGGAGAGTG
AAGATGGGTGTAAAGGAGGGACGGTATTTCAAAGAGGCAAAGGAGGATAC
TCCGTCAATTAAGAAGACAAGAAAAAAGAAGACACGACAACAAGGGGAAG
GAGATAGATGGAGAGGGAGGGAGAGCAAACACCCGAC
back to top

Coding sequence (CDS) from alignment at scaffold_10:14163..15649-

>mRNA_4209 ID=mRNA_4209|Name=jgi.p|Nanoce1779_2|646046|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at scaffold_10:14163..15649- (Nannochloropsis oceanica)
ATGGTGGAGAGCGATGCCTACTACGAAGCCTCCGAAAGCGCCGACCCTTC
CATATCCCCCCTCGAAACCCAGGCGCGTGAGTATATGGAGCAGCATGTCG
ACCCCGTCCTGACCAAGGCCCTGACAGAAATCCATCTTCACAAGCCCCAT
GATGCATGCCAGGCTCTCCTAAACTTTTTCCAGGAACGTCAGGAAATTGC
CACAGGCACAGCAGTCGTAAAACACGGAAGAGGAAAGCACTACGCCGAGC
CCGCCGCGGCGTACGACGGTGTACGAGTCACGGACGACGCCCCCGCGCCC
AAGTGGCTGGCTGAATTGCCATTTGTCGCAAGTAAGGAAAGAAACCAAGG
CATCAACCGGTGGTATGCTGTTCACCACGTGCTGCCTATCCTGGCCCGCC
TTCTGAGGCACCTGGCCGTACAGCAGCCGTCGCCTGACGATGGAAAGCTC
GATGCCTGCGTCGTGGCTTTTTTGATTCGCCACCAACAGGAGCAGAAGGC
ACAAGTCGAAGAAGAGATTCAGGGTCAACAAGACGAAAGCAGACAGGAGC
AGCATCTACTAACCGCTGTCACCTCCTCTGCAACAGTCGCAACTGCTCAT
CCTCCTTCCCCATCTCCTTCTCCCCTTATTCACGTCCTCGTCCTCGGCCT
GGAAGGCTCGGGCAAGTCTACCATCCTCGCCGCCCTCCAAGGCGACCTCT
CTCCTTCCCCCCCTCCCTCTCTGTCCTCCTCTAACAGTGCAACCCCCACC
CTTGTGACCCTTGAACGCCGTCGTCTCCCAGATGACTATACGACACGCCT
CGGCTTCTTCGACGTACCTGGTTCCCGCATCGCACAGCACCAACTCTGGC
CTTCTCTCTACGCACAAGCCCAGGCATTGGTGTGGGTGGGTGACGCGACC
CAAGCATCGCGGTGGGAGGAGGAGAAGGCGGTCCTGCGCGCGTGTCTGGG
GCACGAAGAAGTGAAAGGTAAGCCGGTGTGGATGCTTGTGAATAAGCAAG
ACACGGGCCTTCCCCACCACAGCTTGGGAAGAGTGGAAGAAGAGGTTGGG
AGTATAATGAAAGAGGCCGGGCACGTGGTGTTGCGCGTGGACGGGTGCAT
CGCGGACGCCAAGAGTAATTTTGGGGTGTTGGACCCGGCGTTGGAGGAGG
GTTTGGCCTGGTTGATTGCGGCGATAGGGTGTGAGAGAGGGGAGAGGGGA
CAGTGCGAGAGAGAGGGAGGGGAATGA
back to top
Synonyms
Publications