jgi.p|Nanoce1779_2|588345, mRNA_4204 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588345
Unique NamemRNA_4204
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length667
Alignment locationscaffold_10:1115..1866 +

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Properties
Property NameValue
TranscriptId588431
TrackFilteredModels2
ProteinId588345
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:1115..1866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588345gene_4204Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588345mRNA_4204-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4204CDS_4204Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4204 ID=mRNA_4204|Name=jgi.p|Nanoce1779_2|588345|organism=Nannochloropsis oceanica|type=mRNA|length=667bp
TCCCACAGCCAACAAAAAATGACAGACCCTAGCACCACGCCGCACGCATC
AGCCATCAGCTTCACCTGTCGAATCTGCCGCCGAGAGCTTTTCACGGACA
AGGACTTGGAGCCGCATGCCGCCGGGGCTCAACGCATCAACCGCCGCAAG
CTCGGCAGCGGTACTCTTTCGAGCGCGGCGAACGCTACGGCATGCACGTC
CTATTTCCTCAATGAAGTGGCCTTGGAGAGCTTGAGCTGGGTACGCTCGG
CACTCAAGGCCCATGACGATGCAGCAGAAGCTGGAGCGGAGGGAATAGAA
GGGAAATTAACATGTCCAAATGCCAAGTGTGGTGGTCGTCTAGGAAATTT
TAATTGGAGCGGTTCGCAGTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTG
TTCAGGTGGTGGCGAGCAAGGTTGATCGGAAGGGGAGGGAGGAGACGGAA
GGGCTGGCGGTGGTGGACTTTGGAGCGAAGCTACGGGAGAGGGAAGGACA
ACAAAGACGGCAGCAGCAGCGAGAAGGAAATGAGGAGGGTTGTAAAGAAG
CACTAAACGCAGAGGAAGGGTGACTGAAGGGAGAGACGGGAGAGGATGTA
GTCGTCACACGGACAGTTTGGGAAGGAGTTGTCGTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|588345

>mRNA_4204-protein ID=mRNA_4204-protein|Name=jgi.p|Nanoce1779_2|588345|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MTDPSTTPHASAISFTCRICRRELFTDKDLEPHAAGAQRINRRKLGSGTL
SSAANATACTSYFLNEVALESLSWVRSALKAHDDAAEAGAEGIEGKLTCP
NAKCGGRLGNFNWSGSQCSCGSWVVPAVQVVASKVDRKGREETEGLAVVD
FGAKLREREGQQRRQQQREGNEEGCKEALNAEEG*
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mRNA from alignment at scaffold_10:1115..1866+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4204 ID=mRNA_4204|Name=jgi.p|Nanoce1779_2|588345|organism=Nannochloropsis oceanica|type=mRNA|length=752bp|location=Sequence derived from alignment at scaffold_10:1115..1866+ (Nannochloropsis oceanica)
TCCCACAGCCAACAAAAAATGACAGACCCTAGCACCACGCCGCACGCATC
AGCCATCAGCTTCACCTGTCGAATCTGCCGCCGAGAGCTTTTCACGGACA
AGGACTTGGAGCCGCATGCCGCCGGGGCTCAACGCATCAACCGCCGCAAG
GTATATATGTCTCTTCTCATCTCCTCACCCGCCTGTCCGCACTCCTTCTC
TCCACATATCTGACACTAAATATCTCTGACTACAGCTCGGCAGCGGTACT
CTTTCGAGCGCGGCGAACGCTACGGCATGCACGTCCTATTTCCTCAATGA
AGTGGCCTTGGAGAGCTTGAGCTGGGTACGCTCGGCACTCAAGGCCCATG
ACGATGCAGCAGAAGCTGGAGCGGAGGGAATAGAAGGGAAATTAACATGT
CCAAATGCCAAGTGTGGTGGTCGTCTAGGAAATTTTAATTGGAGCGGTTC
GCAGTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTGTTCAGGTGGTGGCGA
GCAAGGTTGATCGGAAGGGGAGGGAGGAGACGGAAGGGCTGGCGGTGGTG
GACTTTGGAGCGAAGCTACGGGAGAGGGAAGGACAACAAAGACGGCAGCA
GCAGCGAGAAGGAAATGAGGAGGGTTGTAAAGAAGCACTAAACGCAGAGG
AAGGGTGACTGAAGGGAGAGACGGGAGAGGATGTAGTCGTCACACGGACA
GTTTGGGAAGGAGTTGTCGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TG
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Coding sequence (CDS) from alignment at scaffold_10:1115..1866+

>mRNA_4204 ID=mRNA_4204|Name=jgi.p|Nanoce1779_2|588345|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_10:1115..1866+ (Nannochloropsis oceanica)
ATGACAGACCCTAGCACCACGCCGCACGCATCAGCCATCAGCTTCACCTG
TCGAATCTGCCGCCGAGAGCTTTTCACGGACAAGGACTTGGAGCCGCATG
CCGCCGGGGCTCAACGCATCAACCGCCGCAAGCTCGGCAGCGGTACTCTT
TCGAGCGCGGCGAACGCTACGGCATGCACGTCCTATTTCCTCAATGAAGT
GGCCTTGGAGAGCTTGAGCTGGGTACGCTCGGCACTCAAGGCCCATGACG
ATGCAGCAGAAGCTGGAGCGGAGGGAATAGAAGGGAAATTAACATGTCCA
AATGCCAAGTGTGGTGGTCGTCTAGGAAATTTTAATTGGAGCGGTTCGCA
GTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTGTTCAGGTGGTGGCGAGCA
AGGTTGATCGGAAGGGGAGGGAGGAGACGGAAGGGCTGGCGGTGGTGGAC
TTTGGAGCGAAGCTACGGGAGAGGGAAGGACAACAAAGACGGCAGCAGCA
GCGAGAAGGAAATGAGGAGGGTTGTAAAGAAGCACTAAACGCAGAGGAAG
GGTGAATGACAGACCCTAGCACCACGCCGCACGCATCAGCCATCAGCTTC
ACCTGTCGAATCTGCCGCCGAGAGCTTTTCACGGACAAGGACTTGGAGCC
GCATGCCGCCGGGGCTCAACGCATCAACCGCCGCAAGCTCGGCAGCGGTA
CTCTTTCGAGCGCGGCGAACGCTACGGCATGCACGTCCTATTTCCTCAAT
GAAGTGGCCTTGGAGAGCTTGAGCTGGGTACGCTCGGCACTCAAGGCCCA
TGACGATGCAGCAGAAGCTGGAGCGGAGGGAATAGAAGGGAAATTAACAT
GTCCAAATGCCAAGTGTGGTGGTCGTCTAGGAAATTTTAATTGGAGCGGT
TCGCAGTGCTCGTGTGGGTCGTGGGTGGTTCCGGCTGTTCAGGTGGTGGC
GAGCAAGGTTGATCGGAAGGGGAGGGAGGAGACGGAAGGGCTGGCGGTGG
TGGACTTTGGAGCGAAGCTACGGGAGAGGGAAGGACAACAAAGACGGCAG
CAGCAGCGAGAAGGAAATGAGGAGGGTTGTAAAGAAGCACTAAACGCAGA
GGAAGGGTGA
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Synonyms
Publications