jgi.p|Nanoce1779_2|427428, mRNA_4201 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|427428
Unique Name	mRNA_4201
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1025
Alignment location	scaffold_8:1123172..1124959 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	427514
Track	FilteredModels2
ProteinId	427428

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1123172..1124959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|427428	gene_4201	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|427428	mRNA_4201-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4201	CDS_4201	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1123172..1124959+
coding sequence from alignment at scaffold_8:1123172..1124959+

mRNA sequence

>mRNA_4201 ID=mRNA_4201|Name=jgi.p|Nanoce1779_2|427428|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
CCCAAGAGAGAGCGGTGTCGGGGTGTTCTCCAAGTTGACCCTGCCTTTGG
CTTGCCTCCTCGTCGGCGTAAGCTTTGTCTCACGATATGCTCGTTGTCAT
CCCCGTCCCACCCTATAGCCTCGTCGCTTTGAGTCGCTTACTTTGGCTCT
TAGCCCCACGCTTCGTCTCGCTCTAGCCGCTCCTCGTCCCGCCGGTCTAT
CATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCG
TCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCT
GTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCAAGGG
CGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCG
TCCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAGGTGTGCAAG
CAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAACCCGT
GCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAATTCGAGGACT
TCCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCCACGGTCATG
TTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCAT
TGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCCAAGG
CCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGG
GCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTT
TCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGT
TGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTATGTTATAGGC
GTTTGAAATGGCTCTGGCAGGGGAAGGAGGGAGGGATGGTGGGTAAATGA
AACATGCGTGCAGGGCATCGGCGAGATTTAAATATACACGACACCGTGAG
GGGCATCAGGTGTCAAATAGATGAC

protein sequence of jgi.p|Nanoce1779_2|427428

>mRNA_4201-protein ID=mRNA_4201-protein|Name=jgi.p|Nanoce1779_2|427428|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLAASMSAPVLLLVLLVLLALSGTHAFFLPVPAVSSSMTSTTRLHGGIKG
VETFDGAFTLSPESESVLFDFLQCDDMKNEVCKQAKCSGARFTGQLFQPV
PYSPGTPIGMPREFEDFHLNPFYAICNVPPTVMFKAKIFKPPRLCAVFAI
EGLDPEEKDKIMEKAKARMDLQALSAARLATERAKEGGKEGGKEESKLPF
LKGQPVEEDWSKVGASLKELMRGDCAFILYVIGV*

mRNA from alignment at scaffold_8:1123172..1124959+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4201 ID=mRNA_4201|Name=jgi.p|Nanoce1779_2|427428|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at scaffold_8:1123172..1124959+ (Nannochloropsis oceanica)
CCCAAGAGAGAGCGGTGTCGGGGTGTTCTCCAAGTTGACCCTGCCTTTGG
CTTGCCTCCTCGTCGGCGTAAGCTTTGTCTCACGATATGCTCGTTGTCAT
CCCCGTCCCACCCTATAGCCTCGTCGCTTTGAGTCGCTTACTTTGGCTCT
TAGCCCCACGCTTCGTCTCGCTCTAGCCGCTCCTCGTCCCGCCGGTCTAT
CATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCG
TCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCT
GTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCAAGGG
CGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCG
TCCTATTTGACTTTTTGCAGTGCGATGTAAGTGGTTGGGGAGGAGAACGG
AGGGGGGAGGGAGGGGGTGGGGGAGAGGGAGGAGAGAGATGACGAAAAAA
AATGTTGCTCAGATGGATAAAGGTATCAGGTGGGAGGAGAGGACGGTCAG
GAGACAGGTGTGAAGGGGTGAAGCAGGACACGGTCGGTGCCCATGTCGCT
TGTCAATGAAAGGCTGTGGTCTCCAGCTCCTCCATTGTGCTTATTGTCTT
TCATTAAATCTCCCCTCTCTCTCTACCTCTCTTTCCACCAACTGTACCCA
CCTGCCCTCCTTTTTGCAGGACATGAAGAACGAGGTGTGCAAGCAAGCCA
AGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAACCCGTGCCTTAT
TCTCCCGGGACGCCCATCGGTAGGGAGGAAGAGGAGGAGGACGGGAGGCA
TTGGGCCTGGAAGAGGAGATATGATCAGAGGATTGAGAAGATAAATTTGA
GAATTGAGAAGCAAGGATTCAAAGAGAGGGAGGCTTTGGTGTCGCCAATG
GTCTTTCTCGCCTCTCAAATCCCTCTTCATGCCTTTCCCCCCCTCCCTGC
CTCCTCTTCCCAGGGATGCCCCGTGAATTCGAGGACTTCCACCTCAATCC
GTTCTATGCCATCTGCAATGTGCCTCCCACGGTCATGTTCAAGGCCAAGA
TCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCATTGAAGGTAGTTAA
GGCTCACCGGCCCTCTCTCCCTCCCTCCCTCCCTCCCTCGCTCGCTTGAA
TTGTTTTCTCCATCGTCTGCACTGACAGGTCACAATGCACGCCACTCAAC
GGCGCCCCTATTTTCCTCCCTCCCTCCCTCCCTTCCTCCCACCCCCCCTC
CCTCCCCTCCAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAG
GCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCAC
GGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGC
TCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGT
GCGTCGTTGAAGGAGTTGATGAGCGAGGAGGAGAGGGAGGCGGCGGAGGA
GGCGGCGTTGGACGCTATGGTGGTTTAAGGCAGGAGGGGGGAGGGAAGGA
GGGAGGGAGGGAGGGAGGGGGGGGGGAGGAGGGGATTGTGCGTTTATATT
GTATGTTATAGGCGTTTGAAATGGCTCTGGCAGGGGAAGGAGGGAGGGAT
GGTGGGTAAATGAAACATGCGTGCAGGGCATCGGCGAGATTTAAATATAC
ACGACACCGTGAGGGGCATCAGGTGTCAAATAGATGAC

Coding sequence (CDS) from alignment at scaffold_8:1123172..1124959+

>mRNA_4201 ID=mRNA_4201|Name=jgi.p|Nanoce1779_2|427428|organism=Nannochloropsis oceanica|type=CDS|length=3525bp|location=Sequence derived from alignment at scaffold_8:1123172..1124959+ (Nannochloropsis oceanica)
ATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTCCTCGT
CCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCCCGCTG
TTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCAAGGGC
GTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAAAGCGT
CCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAGGTGTGCAAGC
AAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAACCCGTG
CCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAATTCGAGGACTT
CCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCCACGGTCATGT
TCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTGCCATT
GAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCCAAGGC
CCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGAGAGGG
CGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCCCTTTT
CTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCGTCGTT
GAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTATGTTATAGGCG
TTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCGTCCTC
CTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCAGTGCC
CGCTGTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGGCATCA
AGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGTCCGAA
AGCGTCCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAGGTGTG
CAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTTCCAAC
CCGTGCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAATTCGAG
GACTTCCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCCACGGT
CATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGTCTTTG
CCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAAAGGCC
AAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCCACGGA
GAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAAGCTCC
CTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAGGTGCG
TCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTATGTTAT
AGGCGTTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCTCCTCG
TCCTCCTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCCTTCCA
GTGCCCGCTGTTTCTTCCTCGATGACGAGCACCACCCGGCTGCACGGTGG
CATCAAGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCCAGAGT
CCGAAAGCGTCCTATTTGACTTTTTGCAGTGCGATGACATGAAGAACGAG
GTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAGCTCTT
CCAACCCGTGCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCGTGAAT
TCGAGGACTTCCACCTCAATCCGTTCTATGCCATCTGCAATGTGCCTCCC
ACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGCGCCGT
CTTTGCCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAATGGAAA
AGGCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCCTGGCC
ACGGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAGAGCAA
GCTCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAAGGTAG
GTGCGTCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATATTGTAT
GTTATAGGCGTTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTTCTCCT
CCTCGTCCTCCTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTTCTTCC
TTCCAGTGCCCGCTGTTTCTTCCTCGATGACGAGCACCACCCGGCTGCAC
GGTGGCATCAAGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTCTCGCC
AGAGTCCGAAAGCGTCCTATTTGACTTTTTGCAGTGCGATGACATGAAGA
ACGAGGTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGGGGCAG
CTCTTCCAACCCGTGCCTTATTCTCCCGGGACGCCCATCGGGATGCCCCG
TGAATTCGAGGACTTCCACCTCAATCCGTTCTATGCCATCTGCAATGTGC
CTCCCACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCCTTTGC
GCCGTCTTTGCCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAGATAAT
GGAAAAGGCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGCCCGCC
TGGCCACGGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAG
AGCAAGCTCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGGAGCAA
GGTAGGTGCGTCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTTTATAT
TGTATGTTATAGGCGTTTGAATGCTTGCTGCAAGCATGTCCGCCCCTGTT
CTCCTCCTCGTCCTCCTCGTCCTCCTGGCCCTCAGCGGCACGCATGCTTT
CTTCCTTCCAGTGCCCGCTGTTTCTTCCTCGATGACGAGCACCACCCGGC
TGCACGGTGGCATCAAGGGCGTGGAGACGTTCGATGGTGCCTTTACCCTC
TCGCCAGAGTCCGAAAGCGTCCTATTTGACTTTTTGCAGTGCGATGACAT
GAAGAACGAGGTGTGCAAGCAAGCCAAGTGCTCGGGCGCCCGATTCACGG
GGCAGCTCTTCCAACCCGTGCCTTATTCTCCCGGGACGCCCATCGGGATG
CCCCGTGAATTCGAGGACTTCCACCTCAATCCGTTCTATGCCATCTGCAA
TGTGCCTCCCACGGTCATGTTCAAGGCCAAGATCTTCAAGCCCCCCCGCC
TTTGCGCCGTCTTTGCCATTGAAGGCCTTGACCCTGAGGAAAAAGATAAG
ATAATGGAAAAGGCCAAGGCCCGGATGGACCTACAGGCGCTTTCAGCCGC
CCGCCTGGCCACGGAGAGGGCGAAGGAGGGAGGGAAGGAGGGAGGGAAGG
AGGAGAGCAAGCTCCCTTTTCTCAAGGGGCAGCCAGTGGAGGAGGACTGG
AGCAAGGTAGGTGCGTCGTTGAAGGAGTTGATGAGAGGGGATTGTGCGTT
TATATTGTATGTTATAGGCGTTTGA

Synonyms

Publications