jgi.p|Nanoce1779_2|523462, mRNA_420 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523462
Unique NamemRNA_420
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length210
Alignment locationscaffold_3:1039020..1039229 -

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Properties
Property NameValue
TranscriptId523548
TrackFilteredModels2
ProteinId523462
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1039020..1039229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523462gene_420Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_420CDS_420Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523462mRNA_420-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_420 ID=mRNA_420|Name=jgi.p|Nanoce1779_2|523462|organism=Nannochloropsis oceanica|type=mRNA|length=210bp
ATGCCTGCGGGGCCCAAACCGATTGCGCCCCGGGACGATGGCCTGGAGCA
TTATTACGACGTTGTGATTATCGGGACGGGCTTGGTCGAGGCCATGCTGG
CTGCTGCCTTGACCAAGGTGGGGAAAAGCGTATTGCACTACGAGAAGCAC
GATTACTACGGAGGAGAGGACTGGCCTTCCTTTCGCTTGGACGATTTGCG
GACTTGGGCC
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protein sequence of jgi.p|Nanoce1779_2|523462

>mRNA_420-protein ID=mRNA_420-protein|Name=jgi.p|Nanoce1779_2|523462|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MPAGPKPIAPRDDGLEHYYDVVIIGTGLVEAMLAAALTKVGKSVLHYEKH
DYYGGEDWPSFRLDDLRTWA
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mRNA from alignment at scaffold_3:1039020..1039229-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_420 ID=mRNA_420|Name=jgi.p|Nanoce1779_2|523462|organism=Nannochloropsis oceanica|type=mRNA|length=210bp|location=Sequence derived from alignment at scaffold_3:1039020..1039229- (Nannochloropsis oceanica)
ATGCCTGCGGGGCCCAAACCGATTGCGCCCCGGGACGATGGCCTGGAGCA
TTATTACGACGTTGTGATTATCGGGACGGGCTTGGTCGAGGCCATGCTGG
CTGCTGCCTTGACCAAGGTGGGGAAAAGCGTATTGCACTACGAGAAGCAC
GATTACTACGGAGGAGAGGACTGGCCTTCCTTTCGCTTGGACGATTTGCG
GACTTGGGCC
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Coding sequence (CDS) from alignment at scaffold_3:1039020..1039229-

>mRNA_420 ID=mRNA_420|Name=jgi.p|Nanoce1779_2|523462|organism=Nannochloropsis oceanica|type=CDS|length=210bp|location=Sequence derived from alignment at scaffold_3:1039020..1039229- (Nannochloropsis oceanica)
ATGCCTGCGGGGCCCAAACCGATTGCGCCCCGGGACGATGGCCTGGAGCA
TTATTACGACGTTGTGATTATCGGGACGGGCTTGGTCGAGGCCATGCTGG
CTGCTGCCTTGACCAAGGTGGGGAAAAGCGTATTGCACTACGAGAAGCAC
GATTACTACGGAGGAGAGGACTGGCCTTCCTTTCGCTTGGACGATTTGCG
GACTTGGGCC
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Synonyms
Publications